[AMBER] pdb4amber strips atoms

From: Petro <subscribe.khoroshyy.net>
Date: Tue, 4 Feb 2020 13:47:23 +0100

Hi list.
I am running pdb4amber on 6QQA.pdb.
It has a CRF chromophore.
For some reason it strips down these atoms.
Any idea why?

HETATM 519 CG1ACRF A 66 25.913 27.083 34.906 0.85 19.78 C
HETATM 520 CG1BCRF A 66 24.454 25.596 34.719 0.15 7.52 C
HETATM 533 CG2 CRF A 66 29.207 28.997 38.508 1.00 19.73 C

I agree with removing one of CG1, but I have realized after tuning tleap
that all CG atoms are stripped in CRF.
Thanks.
Petro
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Received on Tue Feb 04 2020 - 05:00:02 PST
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