alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research$ export AMBERHOME=/mnt/c/Users/Alen/Documents/Research/amber18/ alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ env SHELL=/bin/bash TERM=xterm-256color OLDPWD=/mnt/c/Users/Alen/Documents/Research WSLENV= USER=alen NAME=DESKTOP-9902UPO LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: WSL_DISTRO_NAME=Ubuntu HOSTTYPE=x86_64 PATH=/home/alen/bin:/home/alen/.local/bin:/home/alen/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Windows/system32:/mnt/c/Windows:/mnt/c/Windows/System32/Wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0/:/mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/Program Files (x86)/Skype/Phone/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/Users/Alen/AppData/Local/Microsoft/WindowsApps:/snap/bin PWD=/mnt/c/Users/Alen/Documents/Research/amber18 LANG=en_US.UTF-8 SHLVL=1 HOME=/home/alen LOGNAME=alen LESSOPEN=| /usr/bin/lesspipe %s AMBERHOME=/mnt/c/Users/Alen/Documents/Research/amber18/ LESSCLOSE=/usr/bin/lesspipe %s %s _=/usr/bin/env alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research$ sudo apt-get install bc csh flex gfortran g++ xorg-dev zlib1g-dev libbz2-dev patch [sudo] password for alen: Reading package lists... Done Building dependency tree Reading state information... Done bc is already the newest version (1.06.95-9build1). flex is already the newest version (2.6.0-11). g++ is already the newest version (4:5.3.1-1ubuntu1). gfortran is already the newest version (4:5.3.1-1ubuntu1). libbz2-dev is already the newest version (1.0.6-8). patch is already the newest version (2.7.5-1). xorg-dev is already the newest version (1:7.7+13ubuntu3). csh is already the newest version (20110502-2.1ubuntu1). zlib1g-dev is already the newest version (1:1.2.8.dfsg-2ubuntu4.1). 0 upgraded, 0 newly installed, 0 to remove and 119 not upgraded. alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research$ cd $AMBERHOME alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ ./configure gnu Checking for updates... Checking for available patches online. This may take a few seconds... Traceback (most recent call last):   File "./update_amber", line 26, in     app.mainloop()   File "/mnt/c/Users/Alen/Documents/Research/amber18/updateutils/main.py", line 516, in mainloop     self.check_updates()   File "/mnt/c/Users/Alen/Documents/Research/amber18/updateutils/main.py", line 183, in check_updates     if self.upgrade.look_for_upgrade():   File "/mnt/c/Users/Alen/Documents/Research/amber18/updateutils/downloader.py", line 108, in new_fcn     return fcn(*args, **kwargs)   File "/mnt/c/Users/Alen/Documents/Research/amber18/updateutils/upgrade.py", line 75, in look_for_upgrade     urlopen(self.location + 'message.txt')   File "/usr/lib/python2.7/urllib2.py", line 154, in urlopen     return opener.open(url, data, timeout)   File "/usr/lib/python2.7/urllib2.py", line 435, in open     response = meth(req, response)   File "/usr/lib/python2.7/urllib2.py", line 548, in http_response     'http', request, response, code, msg, hdrs)   File "/usr/lib/python2.7/urllib2.py", line 467, in error     result = self._call_chain(*args)   File "/usr/lib/python2.7/urllib2.py", line 407, in _call_chain     result = func(*args)   File "/usr/lib/python2.7/urllib2.py", line 654, in http_error_302     return self.parent.open(new, timeout=req.timeout)   File "/usr/lib/python2.7/urllib2.py", line 429, in open     response = self._open(req, data)   File "/usr/lib/python2.7/urllib2.py", line 447, in _open     '_open', req)   File "/usr/lib/python2.7/urllib2.py", line 407, in _call_chain     result = func(*args)   File "/usr/lib/python2.7/urllib2.py", line 1241, in https_open     context=self._context)   File "/usr/lib/python2.7/urllib2.py", line 1198, in do_open     raise URLError(err) urllib2.URLError: Check for updates failed. AMBER_PREFIX=/mnt/c/Users/Alen/Documents/Research/amber18/ AMBER_SOURCE=/mnt/c/Users/Alen/Documents/Research/amber18/ We highly recommend to let AMBER install Python with all prerequisites inside /mnt/c/Users/Alen/Documents/Research/amber18/ via a Continuum Miniconda distribution. Miniconda is chosen because it comes with great package manager conda, which is specially designed for numerical and scientific computing. This makes compiling AMBER Python extensions much easier. This will only need to be done once. It may take several minutes and will require Internet access. Should I download and install Miniconda for you? [y/n] y Downloading an Amber-compatible Python version 2.7 via Miniconda and installing it. This may take several minutes. ================================================================================ This script will download and install a version of Python compatible with every component of AmberTools and install all required and optional prerequisites. The Python distribution is downloaded for your operating system from Miniconda. Downloading Python 2.7 Miniconda Detected Linux kernel. Downloading the Linux installer Downloading the latest Miniconda distribution     Detected 64-bit Linux --2019-10-16 17:24:26--  https://repo.continuum.io/miniconda/Miniconda2-4.5.12-Linux-x86_64.sh Resolving repo.continuum.io (repo.continuum.io)... 2606:4700::6812:c84f, 2606:4700::6812:c94f, 104.18.200.79, ... Connecting to repo.continuum.io (repo.continuum.io)|2606:4700::6812:c84f|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 44861818 (43M) [application/x-sh] Saving to: ‘miniconda.sh’ miniconda.sh                  100%[=================================================>]  42.78M  13.4MB/s    in 3.2s 2019-10-16 17:24:29 (13.4 MB/s) - ‘miniconda.sh’ saved [44861818/44861818] Installing Miniconda Python. PREFIX=/mnt/c/Users/Alen/Documents/Research/amber18/miniconda installing: python-2.7.15-h9bab390_6 ... Python 2.7.15 :: Anaconda, Inc. installing: ca-certificates-2018.03.07-0 ... installing: conda-env-2.6.0-1 ... installing: libgcc-ng-8.2.0-hdf63c60_1 ... installing: libstdcxx-ng-8.2.0-hdf63c60_1 ... installing: libffi-3.2.1-hd88cf55_4 ... installing: ncurses-6.1-he6710b0_1 ... Traceback (most recent call last):   File "/mnt/c/Users/Alen/Documents/Research/amber18/miniconda/pkgs/.install.py", line 616, in     main2()   File "/mnt/c/Users/Alen/Documents/Research/amber18/miniconda/pkgs/.install.py", line 597, in main2     link_dist(opts.link_dist)   File "/mnt/c/Users/Alen/Documents/Research/amber18/miniconda/pkgs/.install.py", line 452, in link_dist     link(prefix, dist, linktype)   File "/mnt/c/Users/Alen/Documents/Research/amber18/miniconda/pkgs/.install.py", line 341, in link     raise Exception("dst exists: %r" % dst) Exception: dst exists: '/mnt/c/Users/Alen/Documents/Research/amber18/miniconda/share/terminfo/e/eterm' Error occurred during Python install: Installing miniconda failed Problem installing Miniconda... see error above. Configure failed due to the errors above! alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ ------ I then use these commands to solve the exception: dst exists alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ sudo apt install attr Reading package lists... Done Building dependency tree Reading state information... Done attr is already the newest version (1:2.4.47-2). 0 upgraded, 0 newly installed, 0 to remove and 119 not upgraded. alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ setfattr -n system.wsl_case_sensitive -v 1 /mnt/c/Users/Alen/Documents/Research/amber18/ alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ ./configure gnu Checking for updates... Checking for available patches online. This may take a few seconds... Traceback (most recent call last):   File "./update_amber", line 26, in     app.mainloop()   File "/mnt/c/Users/Alen/Documents/Research/amber18/updateutils/main.py", line 516, in mainloop     self.check_updates()   File "/mnt/c/Users/Alen/Documents/Research/amber18/updateutils/main.py", line 183, in check_updates     if self.upgrade.look_for_upgrade():   File "/mnt/c/Users/Alen/Documents/Research/amber18/updateutils/downloader.py", line 108, in new_fcn     return fcn(*args, **kwargs)   File "/mnt/c/Users/Alen/Documents/Research/amber18/updateutils/upgrade.py", line 75, in look_for_upgrade     urlopen(self.location + 'message.txt')   File "/usr/lib/python2.7/urllib2.py", line 154, in urlopen     return opener.open(url, data, timeout)   File "/usr/lib/python2.7/urllib2.py", line 435, in open     response = meth(req, response)   File "/usr/lib/python2.7/urllib2.py", line 548, in http_response     'http', request, response, code, msg, hdrs)   File "/usr/lib/python2.7/urllib2.py", line 467, in error     result = self._call_chain(*args)   File "/usr/lib/python2.7/urllib2.py", line 407, in _call_chain     result = func(*args)   File "/usr/lib/python2.7/urllib2.py", line 654, in http_error_302     return self.parent.open(new, timeout=req.timeout)   File "/usr/lib/python2.7/urllib2.py", line 429, in open     response = self._open(req, data)   File "/usr/lib/python2.7/urllib2.py", line 447, in _open     '_open', req)   File "/usr/lib/python2.7/urllib2.py", line 407, in _call_chain     result = func(*args)   File "/usr/lib/python2.7/urllib2.py", line 1241, in https_open     context=self._context)   File "/usr/lib/python2.7/urllib2.py", line 1198, in do_open     raise URLError(err) urllib2.URLError: Check for updates failed. AMBER_PREFIX=/mnt/c/Users/Alen/Documents/Research/amber18/ AMBER_SOURCE=/mnt/c/Users/Alen/Documents/Research/amber18/ Using the AmberTools miniconda installation in /mnt/c/Users/Alen/Documents/Research/amber18//miniconda version 2.7.15 Obtaining the gnu compiler suite versions, e.g.:      gcc -v The C version is 5.4.0 The Fortran version is 5.4.0 Testing the gcc compiler:      gcc -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE  -o testp testp.c OK Testing the g++ compiler:      g++ -fPIC  -o testp testp.cpp OK Testing the gfortran compiler:      gfortran -fPIC  -O0 -o testp testp.f OK Testing mixed C/Fortran compilation:      gcc -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE  -c -o testp.c.o testp.c      gfortran -fPIC  -O0 -c -o testp.f.o testp.f      gcc -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c.o testp.f.o -lgfortran -w OK Testing pointer size:      gcc -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE  -o test_pointer_size test_pointer_size.c Detected 64 bit operating system. Testing flex:OK Testing bison: OK Checking NetCDF...         Using bundled NetCDF library.         Starting NetCDF build.         Configuring NetCDF C interface (may be time-consuming)...         Compiling the NetCDF C interface (may be time-consuming)...         Configuring NetCDF Fortran interface (may be time-consuming)...         Compiling the NetCDF Fortran interface (may be time-consuming)... NetCDF build succeeded. Checking for zlib: OK Checking for libbz2: OK Configuring fftw-3.3 (may be time-consuming)...     fftw-3.3 configure succeeded. Configuring boost (may be time-consuming)...OK Compiling boost (may be time-consuming)...OK Configuring XBLAS (may be time-consuming)...     XBLAS configure succeeded. Configuring CPPTRAJ...complete. The configuration file, config.h, was successfully created. -------------------------------------------------------------------------------- Environment resource files are provided to set the proper environment variables to use AMBER and AmberTools. This is required to run any Python programs (like MMPBSA.py, ParmEd, MCPB.py, and pytraj) If you use a Bourne shell (e.g., bash, sh, zsh, etc.), source the /mnt/c/Users/Alen/Documents/Research/amber18//amber.sh file in your shell. Consider adding the line   test -f /mnt/c/Users/Alen/Documents/Research/amber18//amber.sh && source /mnt/c/Users/Alen/Documents/Research/amber18//amber.sh to your startup file (e.g., ~/.bashrc) If you use a C shell (e.g., csh, tcsh), source the /mnt/c/Users/Alen/Documents/Research/amber18//amber.csh file in your shell. Consider adding the line   test -f /mnt/c/Users/Alen/Documents/Research/amber18//amber.csh && source /mnt/c/Users/Alen/Documents/Research/amber18//amber.csh to your startup file (e.g., ~/.cshrc) NOTE: MacOS users might need to add the content to ~/.bash_profile file (You need to do the above before running 'make install') -------------------------------------------------------------------------------- The next step is to source the amber.sh or amber.csh file   (if needed, see above), and then to type 'make install' Cleaning the src directories. This may take a few moments. Configure complete. alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ source /mnt/c/Users/Alen/Documents/Research/amber18/amber.sh ---This part starts from after my command to "make install", the beginning part was cut off because my terminal window doesn't let me look that far back: ne=native -MT r2cfII_16.lo -MD -MP -MF .deps/r2cfII_16.Tpo -c -o r2cfII_16.lo r2cfII_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_16.lo -MD -MP -MF .deps/r2cfII_16.Tpo -c r2cfII_16.c -o r2cfII_16.o mv -f .deps/r2cfII_16.Tpo .deps/r2cfII_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_32.lo -MD -MP -MF .deps/r2cfII_32.Tpo -c -o r2cfII_32.lo r2cfII_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_32.lo -MD -MP -MF .deps/r2cfII_32.Tpo -c r2cfII_32.c -o r2cfII_32.o mv -f .deps/r2cfII_32.Tpo .deps/r2cfII_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_64.lo -MD -MP -MF .deps/r2cfII_64.Tpo -c -o r2cfII_64.lo r2cfII_64.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_64.lo -MD -MP -MF .deps/r2cfII_64.Tpo -c r2cfII_64.c -o r2cfII_64.o mv -f .deps/r2cfII_64.Tpo .deps/r2cfII_64.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_20.lo -MD -MP -MF .deps/r2cfII_20.Tpo -c -o r2cfII_20.lo r2cfII_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_20.lo -MD -MP -MF .deps/r2cfII_20.Tpo -c r2cfII_20.c -o r2cfII_20.o mv -f .deps/r2cfII_20.Tpo .deps/r2cfII_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_25.lo -MD -MP -MF .deps/r2cfII_25.Tpo -c -o r2cfII_25.lo r2cfII_25.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cfII_25.lo -MD -MP -MF .deps/r2cfII_25.Tpo -c r2cfII_25.c -o r2cfII_25.o mv -f .deps/r2cfII_25.Tpo .deps/r2cfII_25.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_2.lo -MD -MP -MF .deps/hc2cf_2.Tpo -c -o hc2cf_2.lo hc2cf_2.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_2.lo -MD -MP -MF .deps/hc2cf_2.Tpo -c hc2cf_2.c -o hc2cf_2.o mv -f .deps/hc2cf_2.Tpo .deps/hc2cf_2.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_4.lo -MD -MP -MF .deps/hc2cf_4.Tpo -c -o hc2cf_4.lo hc2cf_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_4.lo -MD -MP -MF .deps/hc2cf_4.Tpo -c hc2cf_4.c -o hc2cf_4.o mv -f .deps/hc2cf_4.Tpo .deps/hc2cf_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_6.lo -MD -MP -MF .deps/hc2cf_6.Tpo -c -o hc2cf_6.lo hc2cf_6.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_6.lo -MD -MP -MF .deps/hc2cf_6.Tpo -c hc2cf_6.c -o hc2cf_6.o mv -f .deps/hc2cf_6.Tpo .deps/hc2cf_6.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_8.lo -MD -MP -MF .deps/hc2cf_8.Tpo -c -o hc2cf_8.lo hc2cf_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_8.lo -MD -MP -MF .deps/hc2cf_8.Tpo -c hc2cf_8.c -o hc2cf_8.o mv -f .deps/hc2cf_8.Tpo .deps/hc2cf_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_10.lo -MD -MP -MF .deps/hc2cf_10.Tpo -c -o hc2cf_10.lo hc2cf_10.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_10.lo -MD -MP -MF .deps/hc2cf_10.Tpo -c hc2cf_10.c -o hc2cf_10.o mv -f .deps/hc2cf_10.Tpo .deps/hc2cf_10.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_12.lo -MD -MP -MF .deps/hc2cf_12.Tpo -c -o hc2cf_12.lo hc2cf_12.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_12.lo -MD -MP -MF .deps/hc2cf_12.Tpo -c hc2cf_12.c -o hc2cf_12.o mv -f .deps/hc2cf_12.Tpo .deps/hc2cf_12.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_16.lo -MD -MP -MF .deps/hc2cf_16.Tpo -c -o hc2cf_16.lo hc2cf_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_16.lo -MD -MP -MF .deps/hc2cf_16.Tpo -c hc2cf_16.c -o hc2cf_16.o mv -f .deps/hc2cf_16.Tpo .deps/hc2cf_16.Plo /bin/bash 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-DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf_20.lo -MD -MP -MF .deps/hc2cf_20.Tpo -c hc2cf_20.c -o hc2cf_20.o mv -f .deps/hc2cf_20.Tpo .deps/hc2cf_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_4.lo -MD -MP -MF .deps/hc2cf2_4.Tpo -c -o hc2cf2_4.lo hc2cf2_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_4.lo -MD -MP -MF .deps/hc2cf2_4.Tpo -c hc2cf2_4.c -o hc2cf2_4.o mv -f .deps/hc2cf2_4.Tpo .deps/hc2cf2_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_8.lo -MD -MP -MF .deps/hc2cf2_8.Tpo -c -o hc2cf2_8.lo hc2cf2_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_8.lo -MD -MP -MF .deps/hc2cf2_8.Tpo -c hc2cf2_8.c -o hc2cf2_8.o mv -f .deps/hc2cf2_8.Tpo .deps/hc2cf2_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_16.lo -MD -MP -MF .deps/hc2cf2_16.Tpo -c -o hc2cf2_16.lo hc2cf2_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_16.lo -MD -MP -MF .deps/hc2cf2_16.Tpo -c hc2cf2_16.c -o hc2cf2_16.o mv -f .deps/hc2cf2_16.Tpo .deps/hc2cf2_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_32.lo -MD -MP -MF .deps/hc2cf2_32.Tpo -c -o hc2cf2_32.lo hc2cf2_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_32.lo -MD -MP -MF .deps/hc2cf2_32.Tpo -c hc2cf2_32.c -o hc2cf2_32.o mv -f .deps/hc2cf2_32.Tpo .deps/hc2cf2_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_20.lo -MD -MP -MF .deps/hc2cf2_20.Tpo -c -o hc2cf2_20.lo hc2cf2_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cf2_20.lo -MD -MP -MF .deps/hc2cf2_20.Tpo -c hc2cf2_20.c -o hc2cf2_20.o mv -f .deps/hc2cf2_20.Tpo .deps/hc2cf2_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_2.lo -MD -MP -MF .deps/hc2cfdft_2.Tpo -c -o hc2cfdft_2.lo hc2cfdft_2.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_2.lo -MD -MP -MF .deps/hc2cfdft_2.Tpo -c hc2cfdft_2.c -o hc2cfdft_2.o mv -f .deps/hc2cfdft_2.Tpo .deps/hc2cfdft_2.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_4.lo -MD -MP -MF .deps/hc2cfdft_4.Tpo -c -o hc2cfdft_4.lo hc2cfdft_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_4.lo -MD -MP -MF .deps/hc2cfdft_4.Tpo -c hc2cfdft_4.c -o hc2cfdft_4.o mv -f .deps/hc2cfdft_4.Tpo .deps/hc2cfdft_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_6.lo -MD -MP -MF .deps/hc2cfdft_6.Tpo -c -o hc2cfdft_6.lo hc2cfdft_6.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_6.lo -MD -MP -MF .deps/hc2cfdft_6.Tpo -c hc2cfdft_6.c -o hc2cfdft_6.o mv -f .deps/hc2cfdft_6.Tpo .deps/hc2cfdft_6.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_8.lo -MD -MP -MF .deps/hc2cfdft_8.Tpo -c -o hc2cfdft_8.lo 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.deps/hc2cfdft_32.Tpo -c hc2cfdft_32.c -o hc2cfdft_32.o mv -f .deps/hc2cfdft_32.Tpo .deps/hc2cfdft_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_20.lo -MD -MP -MF .deps/hc2cfdft_20.Tpo -c -o hc2cfdft_20.lo hc2cfdft_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft_20.lo -MD -MP -MF .deps/hc2cfdft_20.Tpo -c hc2cfdft_20.c -o hc2cfdft_20.o mv -f .deps/hc2cfdft_20.Tpo .deps/hc2cfdft_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_4.lo -MD -MP -MF .deps/hc2cfdft2_4.Tpo -c -o hc2cfdft2_4.lo hc2cfdft2_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_4.lo -MD -MP -MF .deps/hc2cfdft2_4.Tpo -c hc2cfdft2_4.c -o hc2cfdft2_4.o mv -f .deps/hc2cfdft2_4.Tpo .deps/hc2cfdft2_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_8.lo -MD -MP -MF .deps/hc2cfdft2_8.Tpo -c -o hc2cfdft2_8.lo hc2cfdft2_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_8.lo -MD -MP -MF .deps/hc2cfdft2_8.Tpo -c hc2cfdft2_8.c -o hc2cfdft2_8.o mv -f .deps/hc2cfdft2_8.Tpo .deps/hc2cfdft2_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_16.lo -MD -MP -MF .deps/hc2cfdft2_16.Tpo -c -o hc2cfdft2_16.lo hc2cfdft2_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_16.lo -MD -MP -MF .deps/hc2cfdft2_16.Tpo -c hc2cfdft2_16.c -o hc2cfdft2_16.o mv -f .deps/hc2cfdft2_16.Tpo .deps/hc2cfdft2_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_32.lo -MD -MP -MF .deps/hc2cfdft2_32.Tpo -c -o hc2cfdft2_32.lo hc2cfdft2_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_32.lo -MD -MP -MF .deps/hc2cfdft2_32.Tpo -c hc2cfdft2_32.c -o hc2cfdft2_32.o mv -f .deps/hc2cfdft2_32.Tpo .deps/hc2cfdft2_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_20.lo -MD -MP -MF .deps/hc2cfdft2_20.Tpo -c -o hc2cfdft2_20.lo hc2cfdft2_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdft2_20.lo -MD -MP -MF .deps/hc2cfdft2_20.Tpo -c hc2cfdft2_20.c -o hc2cfdft2_20.o mv -f .deps/hc2cfdft2_20.Tpo .deps/hc2cfdft2_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT codlist.lo -MD -MP -MF .deps/codlist.Tpo -c -o codlist.lo codlist.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT codlist.lo -MD -MP -MF .deps/codlist.Tpo -c codlist.c -o codlist.o mv -f .deps/codlist.Tpo .deps/codlist.Plo /bin/bash ../../../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o librdft_scalar_r2cf.la  r2cf_2.lo r2cf_3.lo r2cf_4.lo r2cf_5.lo r2cf_6.lo r2cf_7.lo r2cf_8.lo r2cf_9.lo r2cf_10.lo r2cf_11.lo r2cf_12.lo r2cf_13.lo r2cf_14.lo r2cf_15.lo r2cf_16.lo r2cf_32.lo r2cf_64.lo r2cf_128.lo r2cf_20.lo r2cf_25.lo hf_2.lo hf_3.lo hf_4.lo hf_5.lo hf_6.lo hf_7.lo hf_8.lo hf_9.lo hf_10.lo hf_12.lo hf_15.lo hf_16.lo hf_32.lo hf_64.lo hf_20.lo hf_25.lo hf2_4.lo hf2_8.lo hf2_16.lo hf2_32.lo hf2_5.lo hf2_20.lo hf2_25.lo r2cfII_2.lo r2cfII_3.lo r2cfII_4.lo r2cfII_5.lo r2cfII_6.lo r2cfII_7.lo r2cfII_8.lo r2cfII_9.lo r2cfII_10.lo r2cfII_12.lo r2cfII_15.lo r2cfII_16.lo r2cfII_32.lo r2cfII_64.lo r2cfII_20.lo r2cfII_25.lo hc2cf_2.lo hc2cf_4.lo hc2cf_6.lo hc2cf_8.lo hc2cf_10.lo hc2cf_12.lo hc2cf_16.lo hc2cf_32.lo hc2cf_20.lo hc2cf2_4.lo hc2cf2_8.lo hc2cf2_16.lo hc2cf2_32.lo hc2cf2_20.lo hc2cfdft_2.lo hc2cfdft_4.lo hc2cfdft_6.lo hc2cfdft_8.lo hc2cfdft_10.lo hc2cfdft_12.lo hc2cfdft_16.lo hc2cfdft_32.lo hc2cfdft_20.lo hc2cfdft2_4.lo hc2cfdft2_8.lo hc2cfdft2_16.lo hc2cfdft2_32.lo hc2cfdft2_20.lo codlist.lo  -lm libtool: link: ar cru .libs/librdft_scalar_r2cf.a  r2cf_2.o r2cf_3.o r2cf_4.o r2cf_5.o r2cf_6.o r2cf_7.o r2cf_8.o r2cf_9.o r2cf_10.o r2cf_11.o r2cf_12.o r2cf_13.o r2cf_14.o r2cf_15.o r2cf_16.o r2cf_32.o r2cf_64.o r2cf_128.o r2cf_20.o r2cf_25.o hf_2.o hf_3.o hf_4.o hf_5.o hf_6.o hf_7.o hf_8.o hf_9.o hf_10.o hf_12.o hf_15.o hf_16.o hf_32.o hf_64.o hf_20.o hf_25.o hf2_4.o hf2_8.o hf2_16.o hf2_32.o hf2_5.o hf2_20.o hf2_25.o r2cfII_2.o r2cfII_3.o r2cfII_4.o r2cfII_5.o r2cfII_6.o r2cfII_7.o r2cfII_8.o r2cfII_9.o r2cfII_10.o r2cfII_12.o r2cfII_15.o r2cfII_16.o r2cfII_32.o r2cfII_64.o r2cfII_20.o r2cfII_25.o hc2cf_2.o hc2cf_4.o hc2cf_6.o hc2cf_8.o hc2cf_10.o hc2cf_12.o hc2cf_16.o hc2cf_32.o hc2cf_20.o hc2cf2_4.o hc2cf2_8.o hc2cf2_16.o hc2cf2_32.o hc2cf2_20.o hc2cfdft_2.o hc2cfdft_4.o hc2cfdft_6.o hc2cfdft_8.o hc2cfdft_10.o hc2cfdft_12.o hc2cfdft_16.o hc2cfdft_32.o hc2cfdft_20.o hc2cfdft2_4.o hc2cfdft2_8.o hc2cfdft2_16.o hc2cfdft2_32.o hc2cfdft2_20.o codlist.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librdft_scalar_r2cf.a libtool: link: ( cd ".libs" && rm -f "librdft_scalar_r2cf.la" && ln -s "../librdft_scalar_r2cf.la" "librdft_scalar_r2cf.la" ) make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf' Making all in r2cb make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' (                                                                       \ echo "#include \"ifftw.h\"";                                            \ echo ;                                          \ echo;                                                                   \ for i in r2cb_2.c r2cb_3.c r2cb_4.c r2cb_5.c r2cb_6.c r2cb_7.c r2cb_8.c r2cb_9.c r2cb_10.c r2cb_11.c r2cb_12.c r2cb_13.c r2cb_14.c r2cb_15.c r2cb_16.c r2cb_32.c r2cb_64.c r2cb_128.c r2cb_20.c r2cb_25.c hb_2.c hb_3.c hb_4.c hb_5.c hb_6.c hb_7.c hb_8.c hb_9.c hb_10.c hb_12.c hb_15.c hb_16.c hb_32.c hb_64.c hb_20.c hb_25.c  hb2_4.c hb2_8.c hb2_16.c hb2_32.c hb2_5.c hb2_20.c hb2_25.c r2cbIII_2.c r2cbIII_3.c r2cbIII_4.c r2cbIII_5.c r2cbIII_6.c r2cbIII_7.c r2cbIII_8.c r2cbIII_9.c r2cbIII_10.c r2cbIII_12.c r2cbIII_15.c r2cbIII_16.c r2cbIII_32.c r2cbIII_64.c r2cbIII_20.c r2cbIII_25.c  hc2cb_2.c hc2cb_4.c hc2cb_6.c hc2cb_8.c hc2cb_10.c hc2cb_12.c hc2cb_16.c hc2cb_32.c hc2cb_20.c  hc2cb2_4.c hc2cb2_8.c hc2cb2_16.c hc2cb2_32.c hc2cb2_20.c  hc2cbdft_2.c hc2cbdft_4.c hc2cbdft_6.c hc2cbdft_8.c hc2cbdft_10.c hc2cbdft_12.c hc2cbdft_16.c hc2cbdft_32.c hc2cbdft_20.c  hc2cbdft2_4.c hc2cbdft2_8.c hc2cbdft2_16.c hc2cbdft2_32.c hc2cbdft2_20.c  NIL; do         \    if test "$i" != NIL; then                                            \      j=`basename $i | sed -e 's/[.][cS]$//g'`;                  \              echo "extern void X(codelet_$j)(planner *);";      \            fi                                                                   \ done;                                                                   \ echo;                                                                   \ echo;                                                                   \ echo "extern const solvtab X(solvtab_rdft_r2cb);";                              \ echo "const solvtab X(solvtab_rdft_r2cb) = {";                          \ for i in r2cb_2.c r2cb_3.c r2cb_4.c r2cb_5.c r2cb_6.c r2cb_7.c r2cb_8.c r2cb_9.c r2cb_10.c r2cb_11.c r2cb_12.c r2cb_13.c r2cb_14.c r2cb_15.c r2cb_16.c r2cb_32.c r2cb_64.c r2cb_128.c r2cb_20.c r2cb_25.c hb_2.c hb_3.c hb_4.c hb_5.c hb_6.c hb_7.c hb_8.c hb_9.c hb_10.c hb_12.c hb_15.c hb_16.c hb_32.c hb_64.c hb_20.c hb_25.c  hb2_4.c hb2_8.c hb2_16.c hb2_32.c hb2_5.c hb2_20.c hb2_25.c r2cbIII_2.c r2cbIII_3.c r2cbIII_4.c r2cbIII_5.c r2cbIII_6.c r2cbIII_7.c r2cbIII_8.c r2cbIII_9.c r2cbIII_10.c r2cbIII_12.c r2cbIII_15.c r2cbIII_16.c r2cbIII_32.c r2cbIII_64.c r2cbIII_20.c r2cbIII_25.c  hc2cb_2.c hc2cb_4.c hc2cb_6.c hc2cb_8.c hc2cb_10.c hc2cb_12.c hc2cb_16.c hc2cb_32.c hc2cb_20.c  hc2cb2_4.c hc2cb2_8.c hc2cb2_16.c hc2cb2_32.c hc2cb2_20.c  hc2cbdft_2.c hc2cbdft_4.c hc2cbdft_6.c hc2cbdft_8.c hc2cbdft_10.c hc2cbdft_12.c hc2cbdft_16.c hc2cbdft_32.c hc2cbdft_20.c  hc2cbdft2_4.c hc2cbdft2_8.c hc2cbdft2_16.c hc2cbdft2_32.c hc2cbdft2_20.c  NIL; do         \    if test "$i" != NIL; then                                            \      j=`basename $i | sed -e 's/[.][cS]$//g'`;                  \      echo "   SOLVTAB(X(codelet_$j)),";         \    fi                                                                   \ done;                                                                   \ echo "   SOLVTAB_END";                                                  \ echo "};";                                                              \ ) >codlist.c make  all-am make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_2.lo -MD -MP -MF .deps/r2cb_2.Tpo -c -o r2cb_2.lo r2cb_2.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_2.lo -MD -MP -MF .deps/r2cb_2.Tpo -c r2cb_2.c -o r2cb_2.o mv -f .deps/r2cb_2.Tpo .deps/r2cb_2.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_3.lo -MD -MP -MF .deps/r2cb_3.Tpo -c -o r2cb_3.lo r2cb_3.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_3.lo -MD -MP -MF .deps/r2cb_3.Tpo -c r2cb_3.c -o r2cb_3.o mv -f .deps/r2cb_3.Tpo .deps/r2cb_3.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_4.lo -MD -MP -MF .deps/r2cb_4.Tpo -c -o r2cb_4.lo r2cb_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_4.lo -MD -MP -MF .deps/r2cb_4.Tpo -c r2cb_4.c -o r2cb_4.o mv -f .deps/r2cb_4.Tpo .deps/r2cb_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_5.lo -MD -MP -MF .deps/r2cb_5.Tpo -c -o r2cb_5.lo r2cb_5.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_5.lo -MD -MP -MF .deps/r2cb_5.Tpo -c r2cb_5.c -o r2cb_5.o mv -f .deps/r2cb_5.Tpo .deps/r2cb_5.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_6.lo -MD -MP 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-DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_11.lo -MD -MP -MF .deps/r2cb_11.Tpo -c -o r2cb_11.lo r2cb_11.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_11.lo -MD -MP -MF .deps/r2cb_11.Tpo -c r2cb_11.c -o r2cb_11.o mv -f .deps/r2cb_11.Tpo .deps/r2cb_11.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_12.lo -MD -MP -MF .deps/r2cb_12.Tpo -c -o r2cb_12.lo r2cb_12.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_12.lo -MD -MP -MF .deps/r2cb_12.Tpo -c r2cb_12.c -o r2cb_12.o mv -f .deps/r2cb_12.Tpo .deps/r2cb_12.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_13.lo -MD -MP -MF .deps/r2cb_13.Tpo -c -o r2cb_13.lo r2cb_13.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cb_13.lo -MD -MP -MF .deps/r2cb_13.Tpo -c r2cb_13.c -o r2cb_13.o mv -f .deps/r2cb_13.Tpo .deps/r2cb_13.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel 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r2cb_25.lo -MD -MP -MF .deps/r2cb_25.Tpo -c r2cb_25.c -o r2cb_25.o mv -f .deps/r2cb_25.Tpo .deps/r2cb_25.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_2.lo -MD -MP -MF .deps/hb_2.Tpo -c -o hb_2.lo hb_2.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_2.lo -MD -MP -MF .deps/hb_2.Tpo -c hb_2.c -o hb_2.o mv -f .deps/hb_2.Tpo .deps/hb_2.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_3.lo -MD -MP -MF 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-fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_6.lo -MD -MP -MF .deps/hb_6.Tpo -c hb_6.c -o hb_6.o mv -f .deps/hb_6.Tpo .deps/hb_6.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_7.lo -MD -MP -MF .deps/hb_7.Tpo -c -o hb_7.lo hb_7.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_7.lo -MD -MP -MF .deps/hb_7.Tpo -c hb_7.c -o hb_7.o mv -f .deps/hb_7.Tpo .deps/hb_7.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_12.lo -MD -MP -MF .deps/hb_12.Tpo -c hb_12.c -o hb_12.o mv -f .deps/hb_12.Tpo .deps/hb_12.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_15.lo -MD -MP -MF .deps/hb_15.Tpo -c -o hb_15.lo hb_15.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_15.lo -MD -MP -MF .deps/hb_15.Tpo -c hb_15.c -o hb_15.o mv -f .deps/hb_15.Tpo .deps/hb_15.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_16.lo -MD -MP -MF .deps/hb_16.Tpo -c -o hb_16.lo hb_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_16.lo -MD -MP -MF .deps/hb_16.Tpo -c hb_16.c -o hb_16.o mv -f .deps/hb_16.Tpo .deps/hb_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_32.lo -MD -MP -MF .deps/hb_32.Tpo -c -o hb_32.lo hb_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_32.lo -MD -MP -MF .deps/hb_32.Tpo -c hb_32.c -o hb_32.o mv -f .deps/hb_32.Tpo .deps/hb_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_64.lo -MD -MP -MF .deps/hb_64.Tpo -c -o hb_64.lo hb_64.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb_64.lo -MD -MP -MF .deps/hb_64.Tpo -c hb_64.c -o hb_64.o mv -f .deps/hb_64.Tpo .deps/hb_64.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV 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hb_25.lo -MD -MP -MF .deps/hb_25.Tpo -c hb_25.c -o hb_25.o mv -f .deps/hb_25.Tpo .deps/hb_25.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb2_4.lo -MD -MP -MF .deps/hb2_4.Tpo -c -o hb2_4.lo hb2_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb2_4.lo -MD -MP -MF .deps/hb2_4.Tpo -c hb2_4.c -o hb2_4.o mv -f .deps/hb2_4.Tpo .deps/hb2_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb2_8.lo -MD -MP -MF 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-I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb2_5.lo -MD -MP -MF .deps/hb2_5.Tpo -c hb2_5.c -o hb2_5.o mv -f .deps/hb2_5.Tpo .deps/hb2_5.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb2_20.lo -MD -MP -MF .deps/hb2_20.Tpo -c -o hb2_20.lo hb2_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hb2_20.lo -MD -MP -MF .deps/hb2_20.Tpo -c hb2_20.c -o hb2_20.o mv -f .deps/hb2_20.Tpo .deps/hb2_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../.. 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-I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_4.lo -MD -MP -MF .deps/r2cbIII_4.Tpo -c -o r2cbIII_4.lo r2cbIII_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_4.lo -MD -MP -MF .deps/r2cbIII_4.Tpo -c r2cbIII_4.c -o r2cbIII_4.o mv -f .deps/r2cbIII_4.Tpo .deps/r2cbIII_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_5.lo -MD -MP -MF .deps/r2cbIII_5.Tpo -c -o r2cbIII_5.lo r2cbIII_5.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_5.lo -MD -MP -MF .deps/r2cbIII_5.Tpo -c r2cbIII_5.c -o r2cbIII_5.o mv -f .deps/r2cbIII_5.Tpo .deps/r2cbIII_5.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_6.lo -MD -MP -MF .deps/r2cbIII_6.Tpo -c -o r2cbIII_6.lo r2cbIII_6.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_6.lo -MD -MP -MF .deps/r2cbIII_6.Tpo -c r2cbIII_6.c -o r2cbIII_6.o mv -f .deps/r2cbIII_6.Tpo .deps/r2cbIII_6.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_7.lo -MD -MP -MF .deps/r2cbIII_7.Tpo -c -o r2cbIII_7.lo r2cbIII_7.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_7.lo -MD -MP -MF .deps/r2cbIII_7.Tpo -c r2cbIII_7.c -o r2cbIII_7.o mv -f .deps/r2cbIII_7.Tpo .deps/r2cbIII_7.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_8.lo -MD -MP -MF .deps/r2cbIII_8.Tpo -c -o r2cbIII_8.lo r2cbIII_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_8.lo -MD -MP -MF .deps/r2cbIII_8.Tpo -c r2cbIII_8.c -o r2cbIII_8.o mv -f .deps/r2cbIII_8.Tpo .deps/r2cbIII_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_9.lo -MD -MP -MF .deps/r2cbIII_9.Tpo -c -o r2cbIII_9.lo r2cbIII_9.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_9.lo -MD -MP -MF .deps/r2cbIII_9.Tpo -c r2cbIII_9.c -o r2cbIII_9.o mv -f .deps/r2cbIII_9.Tpo .deps/r2cbIII_9.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_10.lo -MD -MP -MF .deps/r2cbIII_10.Tpo -c -o r2cbIII_10.lo r2cbIII_10.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_10.lo -MD -MP -MF .deps/r2cbIII_10.Tpo -c r2cbIII_10.c -o r2cbIII_10.o mv -f .deps/r2cbIII_10.Tpo .deps/r2cbIII_10.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_12.lo -MD -MP -MF .deps/r2cbIII_12.Tpo -c -o r2cbIII_12.lo r2cbIII_12.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_12.lo -MD -MP -MF .deps/r2cbIII_12.Tpo -c r2cbIII_12.c -o r2cbIII_12.o mv -f .deps/r2cbIII_12.Tpo .deps/r2cbIII_12.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_15.lo -MD -MP -MF .deps/r2cbIII_15.Tpo -c -o r2cbIII_15.lo r2cbIII_15.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_15.lo -MD -MP -MF .deps/r2cbIII_15.Tpo -c r2cbIII_15.c -o r2cbIII_15.o mv -f .deps/r2cbIII_15.Tpo .deps/r2cbIII_15.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_16.lo -MD -MP -MF .deps/r2cbIII_16.Tpo -c -o r2cbIII_16.lo r2cbIII_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_16.lo -MD -MP -MF .deps/r2cbIII_16.Tpo -c r2cbIII_16.c -o r2cbIII_16.o mv -f .deps/r2cbIII_16.Tpo .deps/r2cbIII_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_32.lo -MD -MP -MF .deps/r2cbIII_32.Tpo -c -o r2cbIII_32.lo r2cbIII_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_32.lo -MD -MP -MF .deps/r2cbIII_32.Tpo -c r2cbIII_32.c -o r2cbIII_32.o mv -f .deps/r2cbIII_32.Tpo .deps/r2cbIII_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_64.lo -MD -MP -MF .deps/r2cbIII_64.Tpo -c -o r2cbIII_64.lo r2cbIII_64.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_64.lo -MD -MP -MF .deps/r2cbIII_64.Tpo -c r2cbIII_64.c -o r2cbIII_64.o mv -f .deps/r2cbIII_64.Tpo .deps/r2cbIII_64.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_20.lo -MD -MP -MF .deps/r2cbIII_20.Tpo -c -o r2cbIII_20.lo r2cbIII_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_20.lo -MD -MP -MF .deps/r2cbIII_20.Tpo -c r2cbIII_20.c -o r2cbIII_20.o mv -f .deps/r2cbIII_20.Tpo .deps/r2cbIII_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_25.lo -MD -MP -MF .deps/r2cbIII_25.Tpo -c -o r2cbIII_25.lo r2cbIII_25.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2cbIII_25.lo -MD -MP -MF .deps/r2cbIII_25.Tpo -c r2cbIII_25.c -o r2cbIII_25.o mv -f .deps/r2cbIII_25.Tpo .deps/r2cbIII_25.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_2.lo -MD -MP -MF .deps/hc2cb_2.Tpo -c -o hc2cb_2.lo hc2cb_2.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_2.lo -MD -MP -MF .deps/hc2cb_2.Tpo -c hc2cb_2.c -o hc2cb_2.o mv -f .deps/hc2cb_2.Tpo .deps/hc2cb_2.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_4.lo -MD -MP -MF .deps/hc2cb_4.Tpo -c -o hc2cb_4.lo hc2cb_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_4.lo -MD -MP -MF .deps/hc2cb_4.Tpo -c hc2cb_4.c -o hc2cb_4.o mv -f .deps/hc2cb_4.Tpo .deps/hc2cb_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_6.lo -MD -MP -MF .deps/hc2cb_6.Tpo -c -o hc2cb_6.lo hc2cb_6.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_6.lo -MD -MP -MF .deps/hc2cb_6.Tpo -c hc2cb_6.c -o hc2cb_6.o mv -f .deps/hc2cb_6.Tpo .deps/hc2cb_6.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_8.lo -MD -MP -MF .deps/hc2cb_8.Tpo -c -o hc2cb_8.lo hc2cb_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_8.lo -MD -MP -MF .deps/hc2cb_8.Tpo -c hc2cb_8.c -o hc2cb_8.o mv -f .deps/hc2cb_8.Tpo .deps/hc2cb_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_10.lo -MD -MP -MF .deps/hc2cb_10.Tpo -c -o hc2cb_10.lo hc2cb_10.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_10.lo -MD -MP -MF .deps/hc2cb_10.Tpo -c hc2cb_10.c -o hc2cb_10.o mv -f .deps/hc2cb_10.Tpo .deps/hc2cb_10.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_12.lo -MD -MP -MF .deps/hc2cb_12.Tpo -c -o hc2cb_12.lo hc2cb_12.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_12.lo -MD -MP -MF .deps/hc2cb_12.Tpo -c hc2cb_12.c -o hc2cb_12.o mv -f .deps/hc2cb_12.Tpo .deps/hc2cb_12.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_16.lo -MD -MP -MF .deps/hc2cb_16.Tpo -c -o hc2cb_16.lo hc2cb_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_16.lo -MD -MP -MF .deps/hc2cb_16.Tpo -c hc2cb_16.c -o hc2cb_16.o mv -f .deps/hc2cb_16.Tpo .deps/hc2cb_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_32.lo -MD -MP -MF .deps/hc2cb_32.Tpo -c -o hc2cb_32.lo hc2cb_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_32.lo -MD -MP -MF .deps/hc2cb_32.Tpo -c hc2cb_32.c -o hc2cb_32.o mv -f .deps/hc2cb_32.Tpo .deps/hc2cb_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_20.lo -MD -MP -MF .deps/hc2cb_20.Tpo -c -o hc2cb_20.lo hc2cb_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb_20.lo -MD -MP -MF .deps/hc2cb_20.Tpo -c hc2cb_20.c -o hc2cb_20.o mv -f .deps/hc2cb_20.Tpo .deps/hc2cb_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb2_4.lo -MD -MP -MF .deps/hc2cb2_4.Tpo -c -o hc2cb2_4.lo hc2cb2_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb2_4.lo -MD -MP -MF .deps/hc2cb2_4.Tpo -c hc2cb2_4.c -o hc2cb2_4.o mv -f .deps/hc2cb2_4.Tpo .deps/hc2cb2_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../.. 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-I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb2_16.lo -MD -MP -MF .deps/hc2cb2_16.Tpo -c hc2cb2_16.c -o hc2cb2_16.o mv -f .deps/hc2cb2_16.Tpo .deps/hc2cb2_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb2_32.lo -MD -MP -MF .deps/hc2cb2_32.Tpo -c -o hc2cb2_32.lo hc2cb2_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cb2_32.lo -MD -MP -MF .deps/hc2cb2_32.Tpo -c hc2cb2_32.c -o hc2cb2_32.o mv -f .deps/hc2cb2_32.Tpo .deps/hc2cb2_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. 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-I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_2.lo -MD -MP -MF .deps/hc2cbdft_2.Tpo -c hc2cbdft_2.c -o hc2cbdft_2.o mv -f .deps/hc2cbdft_2.Tpo .deps/hc2cbdft_2.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_4.lo -MD -MP -MF .deps/hc2cbdft_4.Tpo -c -o hc2cbdft_4.lo hc2cbdft_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_4.lo -MD -MP -MF .deps/hc2cbdft_4.Tpo -c hc2cbdft_4.c -o hc2cbdft_4.o mv -f .deps/hc2cbdft_4.Tpo .deps/hc2cbdft_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_6.lo -MD -MP -MF .deps/hc2cbdft_6.Tpo -c -o hc2cbdft_6.lo hc2cbdft_6.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_6.lo -MD -MP -MF .deps/hc2cbdft_6.Tpo -c hc2cbdft_6.c -o hc2cbdft_6.o mv -f .deps/hc2cbdft_6.Tpo .deps/hc2cbdft_6.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_8.lo -MD -MP -MF .deps/hc2cbdft_8.Tpo -c -o hc2cbdft_8.lo hc2cbdft_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_8.lo -MD -MP -MF .deps/hc2cbdft_8.Tpo -c hc2cbdft_8.c -o hc2cbdft_8.o mv -f .deps/hc2cbdft_8.Tpo .deps/hc2cbdft_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_10.lo -MD -MP -MF .deps/hc2cbdft_10.Tpo -c -o hc2cbdft_10.lo hc2cbdft_10.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_10.lo -MD -MP -MF .deps/hc2cbdft_10.Tpo -c hc2cbdft_10.c -o hc2cbdft_10.o mv -f .deps/hc2cbdft_10.Tpo .deps/hc2cbdft_10.Plo /bin/bash 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hc2cbdft_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_16.lo -MD -MP -MF .deps/hc2cbdft_16.Tpo -c hc2cbdft_16.c -o hc2cbdft_16.o mv -f .deps/hc2cbdft_16.Tpo .deps/hc2cbdft_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_32.lo -MD -MP -MF .deps/hc2cbdft_32.Tpo -c -o hc2cbdft_32.lo hc2cbdft_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft_32.lo -MD -MP -MF .deps/hc2cbdft_32.Tpo -c hc2cbdft_32.c -o hc2cbdft_32.o 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hc2cbdft2_8.lo -MD -MP -MF .deps/hc2cbdft2_8.Tpo -c hc2cbdft2_8.c -o hc2cbdft2_8.o mv -f .deps/hc2cbdft2_8.Tpo .deps/hc2cbdft2_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft2_16.lo -MD -MP -MF .deps/hc2cbdft2_16.Tpo -c -o hc2cbdft2_16.lo hc2cbdft2_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft2_16.lo -MD -MP -MF .deps/hc2cbdft2_16.Tpo -c hc2cbdft2_16.c -o hc2cbdft2_16.o mv -f .deps/hc2cbdft2_16.Tpo .deps/hc2cbdft2_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV 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-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdft2_20.lo -MD -MP -MF .deps/hc2cbdft2_20.Tpo -c hc2cbdft2_20.c -o hc2cbdft2_20.o mv -f .deps/hc2cbdft2_20.Tpo .deps/hc2cbdft2_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT codlist.lo -MD -MP -MF .deps/codlist.Tpo -c -o codlist.lo codlist.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT codlist.lo -MD -MP -MF .deps/codlist.Tpo -c codlist.c -o codlist.o mv -f .deps/codlist.Tpo .deps/codlist.Plo /bin/bash ../../../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o librdft_scalar_r2cb.la  r2cb_2.lo r2cb_3.lo r2cb_4.lo r2cb_5.lo r2cb_6.lo r2cb_7.lo r2cb_8.lo r2cb_9.lo r2cb_10.lo r2cb_11.lo r2cb_12.lo r2cb_13.lo r2cb_14.lo r2cb_15.lo r2cb_16.lo r2cb_32.lo r2cb_64.lo r2cb_128.lo r2cb_20.lo r2cb_25.lo hb_2.lo hb_3.lo hb_4.lo hb_5.lo hb_6.lo hb_7.lo hb_8.lo hb_9.lo hb_10.lo hb_12.lo hb_15.lo hb_16.lo hb_32.lo hb_64.lo hb_20.lo hb_25.lo hb2_4.lo hb2_8.lo hb2_16.lo hb2_32.lo hb2_5.lo hb2_20.lo hb2_25.lo r2cbIII_2.lo r2cbIII_3.lo r2cbIII_4.lo r2cbIII_5.lo r2cbIII_6.lo r2cbIII_7.lo r2cbIII_8.lo r2cbIII_9.lo r2cbIII_10.lo r2cbIII_12.lo r2cbIII_15.lo r2cbIII_16.lo r2cbIII_32.lo r2cbIII_64.lo r2cbIII_20.lo r2cbIII_25.lo hc2cb_2.lo hc2cb_4.lo hc2cb_6.lo hc2cb_8.lo hc2cb_10.lo hc2cb_12.lo hc2cb_16.lo hc2cb_32.lo hc2cb_20.lo hc2cb2_4.lo hc2cb2_8.lo hc2cb2_16.lo hc2cb2_32.lo hc2cb2_20.lo hc2cbdft_2.lo hc2cbdft_4.lo hc2cbdft_6.lo hc2cbdft_8.lo hc2cbdft_10.lo hc2cbdft_12.lo hc2cbdft_16.lo hc2cbdft_32.lo hc2cbdft_20.lo hc2cbdft2_4.lo hc2cbdft2_8.lo hc2cbdft2_16.lo hc2cbdft2_32.lo hc2cbdft2_20.lo codlist.lo  -lm libtool: link: ar cru .libs/librdft_scalar_r2cb.a  r2cb_2.o r2cb_3.o r2cb_4.o r2cb_5.o r2cb_6.o r2cb_7.o r2cb_8.o r2cb_9.o r2cb_10.o r2cb_11.o r2cb_12.o r2cb_13.o r2cb_14.o r2cb_15.o r2cb_16.o r2cb_32.o r2cb_64.o r2cb_128.o r2cb_20.o r2cb_25.o hb_2.o hb_3.o hb_4.o hb_5.o hb_6.o hb_7.o hb_8.o hb_9.o hb_10.o hb_12.o hb_15.o hb_16.o hb_32.o hb_64.o hb_20.o hb_25.o hb2_4.o hb2_8.o hb2_16.o hb2_32.o hb2_5.o hb2_20.o hb2_25.o r2cbIII_2.o r2cbIII_3.o r2cbIII_4.o r2cbIII_5.o r2cbIII_6.o r2cbIII_7.o r2cbIII_8.o r2cbIII_9.o r2cbIII_10.o r2cbIII_12.o r2cbIII_15.o r2cbIII_16.o r2cbIII_32.o r2cbIII_64.o r2cbIII_20.o r2cbIII_25.o hc2cb_2.o hc2cb_4.o hc2cb_6.o hc2cb_8.o hc2cb_10.o hc2cb_12.o hc2cb_16.o hc2cb_32.o hc2cb_20.o hc2cb2_4.o hc2cb2_8.o hc2cb2_16.o hc2cb2_32.o hc2cb2_20.o hc2cbdft_2.o hc2cbdft_4.o hc2cbdft_6.o hc2cbdft_8.o hc2cbdft_10.o hc2cbdft_12.o hc2cbdft_16.o hc2cbdft_32.o hc2cbdft_20.o hc2cbdft2_4.o hc2cbdft2_8.o hc2cbdft2_16.o hc2cbdft2_32.o hc2cbdft2_20.o codlist.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librdft_scalar_r2cb.a libtool: link: ( cd ".libs" && rm -f "librdft_scalar_r2cb.la" && ln -s "../librdft_scalar_r2cb.la" "librdft_scalar_r2cb.la" ) make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' Making all in r2r make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' (                                                                       \ echo "#include \"ifftw.h\"";                                            \ echo ;                                          \ echo;                                                                   \ for i in  e01_8.c  e10_8.c        NIL; do                                       \    if test "$i" != NIL; then                                            \      j=`basename $i | sed -e 's/[.][cS]$//g'`;                  \              echo "extern void X(codelet_$j)(planner *);";      \            fi                                                                   \ done;                                                                   \ echo;                                                                   \ echo;                                                                   \ echo "extern const solvtab X(solvtab_rdft_r2r);";                               \ echo "const solvtab X(solvtab_rdft_r2r) = {";                           \ for i in  e01_8.c  e10_8.c        NIL; do                                       \    if test "$i" != NIL; then                                            \      j=`basename $i | sed -e 's/[.][cS]$//g'`;                  \      echo "   SOLVTAB(X(codelet_$j)),";         \    fi                                                                   \ done;                                                                   \ echo "   SOLVTAB_END";                                                  \ echo "};";                                                              \ ) >codlist.c make  all-am make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT e01_8.lo -MD -MP -MF .deps/e01_8.Tpo -c -o e01_8.lo e01_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT e01_8.lo -MD -MP -MF .deps/e01_8.Tpo -c e01_8.c -o e01_8.o mv -f .deps/e01_8.Tpo .deps/e01_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT e10_8.lo -MD -MP -MF .deps/e10_8.Tpo -c -o e10_8.lo e10_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT e10_8.lo -MD -MP -MF .deps/e10_8.Tpo -c e10_8.c -o e10_8.o mv -f .deps/e10_8.Tpo .deps/e10_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/scalar   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT codlist.lo -MD -MP -MF .deps/codlist.Tpo -c -o codlist.lo codlist.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/scalar -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT codlist.lo -MD -MP -MF .deps/codlist.Tpo -c codlist.c -o codlist.o mv -f .deps/codlist.Tpo .deps/codlist.Plo /bin/bash ../../../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o librdft_scalar_r2r.la   e01_8.lo e10_8.lo       codlist.lo  -lm libtool: link: ar cru .libs/librdft_scalar_r2r.a  e01_8.o e10_8.o codlist.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librdft_scalar_r2r.a libtool: link: ( cd ".libs" && rm -f "librdft_scalar_r2r.la" && ln -s "../librdft_scalar_r2r.la" "librdft_scalar_r2r.la" ) make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' /bin/bash ../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..  -I../../kernel -I../../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hfb.lo -MD -MP -MF .deps/hfb.Tpo -c -o hfb.lo hfb.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../../kernel -I../../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hfb.lo -MD -MP -MF .deps/hfb.Tpo -c hfb.c -o hfb.o mv -f .deps/hfb.Tpo .deps/hfb.Plo /bin/bash ../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..  -I../../kernel -I../../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2c.lo -MD -MP -MF .deps/r2c.Tpo -c -o r2c.lo r2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../../kernel -I../../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2c.lo -MD -MP -MF .deps/r2c.Tpo -c r2c.c -o r2c.o mv -f .deps/r2c.Tpo .deps/r2c.Plo /bin/bash ../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..  -I../../kernel -I../../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2r.lo -MD -MP -MF .deps/r2r.Tpo -c -o r2r.lo r2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../../kernel -I../../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT r2r.lo -MD -MP -MF .deps/r2r.Tpo -c r2r.c -o r2r.o mv -f .deps/r2r.Tpo .deps/r2r.Plo /bin/bash ../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../..  -I../../kernel -I../../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2c.lo -MD -MP -MF .deps/hc2c.Tpo -c -o hc2c.lo hc2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../../kernel -I../../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2c.lo -MD -MP -MF .deps/hc2c.Tpo -c hc2c.c -o hc2c.o mv -f .deps/hc2c.Tpo .deps/hc2c.Plo /bin/bash ../../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o librdft_scalar.la  hfb.lo r2c.lo r2r.lo hc2c.lo  -lm libtool: link: ar cru .libs/librdft_scalar.a  hfb.o r2c.o r2r.o hc2c.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librdft_scalar.a libtool: link: ( cd ".libs" && rm -f "librdft_scalar.la" && ln -s "../librdft_scalar.la" "librdft_scalar.la" ) make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' Making all in simd make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' Making all in common make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' (                                                                       \ echo "#include \"ifftw.h\"";                                            \ echo "#include SIMD_HEADER";                                            \ echo;                                                                   \ for i in hc2cfdftv_2.c hc2cfdftv_4.c hc2cfdftv_6.c hc2cfdftv_8.c hc2cfdftv_10.c hc2cfdftv_12.c hc2cfdftv_16.c hc2cfdftv_32.c hc2cfdftv_20.c hc2cbdftv_2.c hc2cbdftv_4.c hc2cbdftv_6.c hc2cbdftv_8.c hc2cbdftv_10.c hc2cbdftv_12.c hc2cbdftv_16.c hc2cbdftv_32.c hc2cbdftv_20.c NIL; do                                  \    if test "$i" != NIL; then                                            \      j=`basename $i | sed -e 's/[.][cS]$//g'`;                  \              echo "extern void XSIMD(codelet_$j)(planner *);";  \            fi                                                                   \ done;                                                                   \ echo;                                                                   \ echo;                                                                   \ echo "extern const solvtab XSIMD(solvtab_rdft);";                               \ echo "const solvtab XSIMD(solvtab_rdft) = {";                           \ for i in hc2cfdftv_2.c hc2cfdftv_4.c hc2cfdftv_6.c hc2cfdftv_8.c hc2cfdftv_10.c hc2cfdftv_12.c hc2cfdftv_16.c hc2cfdftv_32.c hc2cfdftv_20.c hc2cbdftv_2.c hc2cbdftv_4.c hc2cbdftv_6.c hc2cbdftv_8.c hc2cbdftv_10.c hc2cbdftv_12.c hc2cbdftv_16.c hc2cbdftv_32.c hc2cbdftv_20.c NIL; do                                  \    if test "$i" != NIL; then                                            \      j=`basename $i | sed -e 's/[.][cS]$//g'`;                  \      echo "   SOLVTAB(XSIMD(codelet_$j)),";             \    fi                                                                   \ done;                                                                   \ echo "   SOLVTAB_END";                                                  \ echo "};";                                                              \ ) >codlist.c make  all-am make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' Making all in sse2 make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_2".c\"";                  \ ) >hc2cfdftv_2.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_4".c\"";                  \ ) >hc2cfdftv_4.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_6".c\"";                  \ ) >hc2cfdftv_6.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_8".c\"";                  \ ) >hc2cfdftv_8.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_10".c\"";                 \ ) >hc2cfdftv_10.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_12".c\"";                 \ ) >hc2cfdftv_12.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_16".c\"";                 \ ) >hc2cfdftv_16.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_32".c\"";                 \ ) >hc2cfdftv_32.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cfdftv_20".c\"";                 \ ) >hc2cfdftv_20.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_2".c\"";                  \ ) >hc2cbdftv_2.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_4".c\"";                  \ ) >hc2cbdftv_4.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_6".c\"";                  \ ) >hc2cbdftv_6.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_8".c\"";                  \ ) >hc2cbdftv_8.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_10".c\"";                 \ ) >hc2cbdftv_10.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_12".c\"";                 \ ) >hc2cbdftv_12.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_16".c\"";                 \ ) >hc2cbdftv_16.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_32".c\"";                 \ ) >hc2cbdftv_32.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"hc2cbdftv_20".c\"";                 \ ) >hc2cbdftv_20.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"genus".c\"";                        \ ) >genus.c (                                                       \ echo "/* Generated automatically.  DO NOT EDIT! */";    \ echo "#define SIMD_HEADER \"simd-sse2.h\"";             \ echo "#include \"../common/"codlist".c\"";                      \ ) >codlist.c make  all-am make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_2.lo -MD -MP -MF .deps/hc2cfdftv_2.Tpo -c -o hc2cfdftv_2.lo hc2cfdftv_2.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_2.lo -MD -MP -MF .deps/hc2cfdftv_2.Tpo -c hc2cfdftv_2.c -o hc2cfdftv_2.o mv -f .deps/hc2cfdftv_2.Tpo .deps/hc2cfdftv_2.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_4.lo -MD -MP -MF .deps/hc2cfdftv_4.Tpo -c -o hc2cfdftv_4.lo hc2cfdftv_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_4.lo -MD -MP -MF .deps/hc2cfdftv_4.Tpo -c hc2cfdftv_4.c -o hc2cfdftv_4.o mv -f .deps/hc2cfdftv_4.Tpo .deps/hc2cfdftv_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_6.lo -MD -MP -MF .deps/hc2cfdftv_6.Tpo -c -o hc2cfdftv_6.lo hc2cfdftv_6.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_6.lo -MD -MP -MF .deps/hc2cfdftv_6.Tpo -c hc2cfdftv_6.c -o hc2cfdftv_6.o mv -f .deps/hc2cfdftv_6.Tpo .deps/hc2cfdftv_6.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_8.lo -MD -MP -MF .deps/hc2cfdftv_8.Tpo -c -o hc2cfdftv_8.lo hc2cfdftv_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_8.lo -MD -MP -MF .deps/hc2cfdftv_8.Tpo -c hc2cfdftv_8.c -o hc2cfdftv_8.o mv -f .deps/hc2cfdftv_8.Tpo .deps/hc2cfdftv_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_10.lo -MD -MP -MF .deps/hc2cfdftv_10.Tpo -c -o hc2cfdftv_10.lo hc2cfdftv_10.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_10.lo -MD -MP -MF .deps/hc2cfdftv_10.Tpo -c hc2cfdftv_10.c -o hc2cfdftv_10.o mv -f .deps/hc2cfdftv_10.Tpo .deps/hc2cfdftv_10.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_12.lo -MD -MP -MF .deps/hc2cfdftv_12.Tpo -c -o hc2cfdftv_12.lo hc2cfdftv_12.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_12.lo -MD -MP -MF .deps/hc2cfdftv_12.Tpo -c hc2cfdftv_12.c -o hc2cfdftv_12.o mv -f .deps/hc2cfdftv_12.Tpo .deps/hc2cfdftv_12.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_16.lo -MD -MP -MF .deps/hc2cfdftv_16.Tpo -c -o hc2cfdftv_16.lo hc2cfdftv_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_16.lo -MD -MP -MF .deps/hc2cfdftv_16.Tpo -c hc2cfdftv_16.c -o hc2cfdftv_16.o mv -f .deps/hc2cfdftv_16.Tpo .deps/hc2cfdftv_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_32.lo -MD -MP -MF .deps/hc2cfdftv_32.Tpo -c -o hc2cfdftv_32.lo hc2cfdftv_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_32.lo -MD -MP -MF .deps/hc2cfdftv_32.Tpo -c hc2cfdftv_32.c -o hc2cfdftv_32.o mv -f .deps/hc2cfdftv_32.Tpo .deps/hc2cfdftv_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_20.lo -MD -MP -MF .deps/hc2cfdftv_20.Tpo -c -o hc2cfdftv_20.lo hc2cfdftv_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cfdftv_20.lo -MD -MP -MF .deps/hc2cfdftv_20.Tpo -c hc2cfdftv_20.c -o hc2cfdftv_20.o mv -f .deps/hc2cfdftv_20.Tpo .deps/hc2cfdftv_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_2.lo -MD -MP -MF .deps/hc2cbdftv_2.Tpo -c -o hc2cbdftv_2.lo hc2cbdftv_2.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_2.lo -MD -MP -MF .deps/hc2cbdftv_2.Tpo -c hc2cbdftv_2.c -o hc2cbdftv_2.o mv -f .deps/hc2cbdftv_2.Tpo .deps/hc2cbdftv_2.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_4.lo -MD -MP -MF .deps/hc2cbdftv_4.Tpo -c -o hc2cbdftv_4.lo hc2cbdftv_4.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_4.lo -MD -MP -MF .deps/hc2cbdftv_4.Tpo -c hc2cbdftv_4.c -o hc2cbdftv_4.o mv -f .deps/hc2cbdftv_4.Tpo .deps/hc2cbdftv_4.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_6.lo -MD -MP -MF .deps/hc2cbdftv_6.Tpo -c -o hc2cbdftv_6.lo hc2cbdftv_6.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_6.lo -MD -MP -MF .deps/hc2cbdftv_6.Tpo -c hc2cbdftv_6.c -o hc2cbdftv_6.o mv -f .deps/hc2cbdftv_6.Tpo .deps/hc2cbdftv_6.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_8.lo -MD -MP -MF .deps/hc2cbdftv_8.Tpo -c -o hc2cbdftv_8.lo hc2cbdftv_8.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_8.lo -MD -MP -MF .deps/hc2cbdftv_8.Tpo -c hc2cbdftv_8.c -o hc2cbdftv_8.o mv -f .deps/hc2cbdftv_8.Tpo .deps/hc2cbdftv_8.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_10.lo -MD -MP -MF .deps/hc2cbdftv_10.Tpo -c -o hc2cbdftv_10.lo hc2cbdftv_10.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_10.lo -MD -MP -MF .deps/hc2cbdftv_10.Tpo -c hc2cbdftv_10.c -o hc2cbdftv_10.o mv -f .deps/hc2cbdftv_10.Tpo .deps/hc2cbdftv_10.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_12.lo -MD -MP -MF .deps/hc2cbdftv_12.Tpo -c -o hc2cbdftv_12.lo hc2cbdftv_12.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_12.lo -MD -MP -MF .deps/hc2cbdftv_12.Tpo -c hc2cbdftv_12.c -o hc2cbdftv_12.o mv -f .deps/hc2cbdftv_12.Tpo .deps/hc2cbdftv_12.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_16.lo -MD -MP -MF .deps/hc2cbdftv_16.Tpo -c -o hc2cbdftv_16.lo hc2cbdftv_16.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_16.lo -MD -MP -MF .deps/hc2cbdftv_16.Tpo -c hc2cbdftv_16.c -o hc2cbdftv_16.o mv -f .deps/hc2cbdftv_16.Tpo .deps/hc2cbdftv_16.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_32.lo -MD -MP -MF .deps/hc2cbdftv_32.Tpo -c -o hc2cbdftv_32.lo hc2cbdftv_32.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_32.lo -MD -MP -MF .deps/hc2cbdftv_32.Tpo -c hc2cbdftv_32.c -o hc2cbdftv_32.o mv -f .deps/hc2cbdftv_32.Tpo .deps/hc2cbdftv_32.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_20.lo -MD -MP -MF .deps/hc2cbdftv_20.Tpo -c -o hc2cbdftv_20.lo hc2cbdftv_20.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2cbdftv_20.lo -MD -MP -MF .deps/hc2cbdftv_20.Tpo -c hc2cbdftv_20.c -o hc2cbdftv_20.o mv -f .deps/hc2cbdftv_20.Tpo .deps/hc2cbdftv_20.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT genus.lo -MD -MP -MF .deps/genus.Tpo -c -o genus.lo genus.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT genus.lo -MD -MP -MF .deps/genus.Tpo -c genus.c -o genus.o mv -f .deps/genus.Tpo .deps/genus.Plo /bin/bash ../../../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../..  -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support  -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT codlist.lo -MD -MP -MF .deps/codlist.Tpo -c -o codlist.lo codlist.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../.. -I../../../kernel -I../../../rdft -I../../../rdft/simd -I../../../simd-support -msse2 -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT codlist.lo -MD -MP -MF .deps/codlist.Tpo -c codlist.c -o codlist.o mv -f .deps/codlist.Tpo .deps/codlist.Plo /bin/bash ../../../libtool --tag=CC   --mode=link gcc -msse2 -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o librdft_sse2_codelets.la  hc2cfdftv_2.lo hc2cfdftv_4.lo hc2cfdftv_6.lo hc2cfdftv_8.lo hc2cfdftv_10.lo hc2cfdftv_12.lo hc2cfdftv_16.lo hc2cfdftv_32.lo hc2cfdftv_20.lo hc2cbdftv_2.lo hc2cbdftv_4.lo hc2cbdftv_6.lo hc2cbdftv_8.lo hc2cbdftv_10.lo hc2cbdftv_12.lo hc2cbdftv_16.lo hc2cbdftv_32.lo hc2cbdftv_20.lo genus.lo codlist.lo  -lm libtool: link: ar cru .libs/librdft_sse2_codelets.a  hc2cfdftv_2.o hc2cfdftv_4.o hc2cfdftv_6.o hc2cfdftv_8.o hc2cfdftv_10.o hc2cfdftv_12.o hc2cfdftv_16.o hc2cfdftv_32.o hc2cfdftv_20.o hc2cbdftv_2.o hc2cbdftv_4.o hc2cbdftv_6.o hc2cbdftv_8.o hc2cbdftv_10.o hc2cbdftv_12.o hc2cbdftv_16.o hc2cbdftv_32.o hc2cbdftv_20.o genus.o codlist.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librdft_sse2_codelets.a libtool: link: ( cd ".libs" && rm -f "librdft_sse2_codelets.la" && ln -s "../librdft_sse2_codelets.la" "librdft_sse2_codelets.la" ) make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' Making all in avx make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' make  all-am make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' Making all in altivec make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make  all-am make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2hc.lo -MD -MP -MF .deps/hc2hc.Tpo -c -o hc2hc.lo hc2hc.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT hc2hc.lo -MD -MP -MF .deps/hc2hc.Tpo -c hc2hc.c -o hc2hc.o mv -f .deps/hc2hc.Tpo .deps/hc2hc.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT dft-r2hc.lo -MD -MP -MF .deps/dft-r2hc.Tpo -c -o dft-r2hc.lo dft-r2hc.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT dft-r2hc.lo -MD -MP -MF .deps/dft-r2hc.Tpo -c dft-r2hc.c -o dft-r2hc.o mv -f .deps/dft-r2hc.Tpo .deps/dft-r2hc.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT dht-r2hc.lo -MD -MP -MF .deps/dht-r2hc.Tpo -c -o dht-r2hc.lo dht-r2hc.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT dht-r2hc.lo -MD -MP -MF .deps/dht-r2hc.Tpo -c dht-r2hc.c -o dht-r2hc.o mv -f .deps/dht-r2hc.Tpo .deps/dht-r2hc.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT dht-rader.lo -MD -MP -MF .deps/dht-rader.Tpo -c -o dht-rader.lo dht-rader.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT dht-rader.lo -MD -MP -MF .deps/dht-rader.Tpo -c dht-rader.c -o dht-rader.o mv -f .deps/dht-rader.Tpo .deps/dht-rader.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT buffered.lo -MD -MP -MF .deps/buffered.Tpo -c -o buffered.lo buffered.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT buffered.lo -MD -MP -MF .deps/buffered.Tpo -c buffered.c -o buffered.o mv -f .deps/buffered.Tpo .deps/buffered.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT conf.lo -MD -MP -MF .deps/conf.Tpo -c -o conf.lo conf.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT conf.lo -MD -MP -MF .deps/conf.Tpo -c conf.c -o conf.o mv -f .deps/conf.Tpo .deps/conf.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT direct-r2r.lo -MD -MP -MF .deps/direct-r2r.Tpo -c -o direct-r2r.lo direct-r2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT direct-r2r.lo -MD -MP -MF .deps/direct-r2r.Tpo -c direct-r2r.c -o direct-r2r.o mv -f .deps/direct-r2r.Tpo .deps/direct-r2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT direct-r2c.lo -MD -MP -MF .deps/direct-r2c.Tpo -c -o direct-r2c.lo direct-r2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT direct-r2c.lo -MD -MP -MF .deps/direct-r2c.Tpo -c direct-r2c.c -o direct-r2c.o mv -f .deps/direct-r2c.Tpo .deps/direct-r2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT generic.lo -MD -MP -MF .deps/generic.Tpo -c -o generic.lo generic.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV 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rdft2-tensor-max-index.lo -MD -MP -MF .deps/rdft2-tensor-max-index.Tpo -c rdft2-tensor-max-index.c -o rdft2-tensor-max-index.o mv -f .deps/rdft2-tensor-max-index.Tpo .deps/rdft2-tensor-max-index.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT rdft2-inplace-strides.lo -MD -MP -MF .deps/rdft2-inplace-strides.Tpo -c -o rdft2-inplace-strides.lo rdft2-inplace-strides.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT rdft2-inplace-strides.lo -MD -MP -MF .deps/rdft2-inplace-strides.Tpo -c rdft2-inplace-strides.c -o rdft2-inplace-strides.o mv -f .deps/rdft2-inplace-strides.Tpo .deps/rdft2-inplace-strides.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT rdft2-strides.lo -MD -MP -MF .deps/rdft2-strides.Tpo -c -o rdft2-strides.lo rdft2-strides.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT rdft2-strides.lo -MD -MP -MF .deps/rdft2-strides.Tpo -c rdft2-strides.c -o rdft2-strides.o mv -f .deps/rdft2-strides.Tpo .deps/rdft2-strides.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT khc2c.lo -MD -MP -MF .deps/khc2c.Tpo -c -o khc2c.lo khc2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT khc2c.lo -MD -MP -MF .deps/khc2c.Tpo -c khc2c.c -o khc2c.o mv -f .deps/khc2c.Tpo .deps/khc2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT ct-hc2c.lo -MD -MP -MF .deps/ct-hc2c.Tpo -c -o ct-hc2c.lo ct-hc2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT ct-hc2c.lo -MD -MP -MF .deps/ct-hc2c.Tpo -c ct-hc2c.c -o ct-hc2c.o mv -f .deps/ct-hc2c.Tpo .deps/ct-hc2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT ct-hc2c-direct.lo -MD -MP -MF .deps/ct-hc2c-direct.Tpo -c -o ct-hc2c-direct.lo ct-hc2c-direct.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT ct-hc2c-direct.lo -MD -MP -MF .deps/ct-hc2c-direct.Tpo -c ct-hc2c-direct.c -o ct-hc2c-direct.o mv -f .deps/ct-hc2c-direct.Tpo .deps/ct-hc2c-direct.Plo /bin/bash ../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o librdft.la  hc2hc.lo dft-r2hc.lo dht-r2hc.lo dht-rader.lo buffered.lo conf.lo direct-r2r.lo direct-r2c.lo generic.lo hc2hc-direct.lo hc2hc-generic.lo khc2hc.lo kr2c.lo kr2r.lo indirect.lo nop.lo plan.lo problem.lo rank0.lo rank-geq2.lo rdft-dht.lo solve.lo vrank-geq1.lo vrank3-transpose.lo buffered2.lo direct2.lo nop2.lo rank0-rdft2.lo rank-geq2-rdft2.lo plan2.lo problem2.lo solve2.lo vrank-geq1-rdft2.lo rdft2-rdft.lo rdft2-tensor-max-index.lo rdft2-inplace-strides.lo rdft2-strides.lo khc2c.lo ct-hc2c.lo ct-hc2c-direct.lo  -lm libtool: link: ar cru .libs/librdft.a  hc2hc.o dft-r2hc.o dht-r2hc.o dht-rader.o buffered.o conf.o direct-r2r.o direct-r2c.o generic.o hc2hc-direct.o hc2hc-generic.o khc2hc.o kr2c.o kr2r.o indirect.o nop.o plan.o problem.o rank0.o rank-geq2.o rdft-dht.o solve.o vrank-geq1.o vrank3-transpose.o buffered2.o direct2.o nop2.o rank0-rdft2.o rank-geq2-rdft2.o plan2.o problem2.o solve2.o vrank-geq1-rdft2.o rdft2-rdft.o rdft2-tensor-max-index.o rdft2-inplace-strides.o rdft2-strides.o khc2c.o ct-hc2c.o ct-hc2c-direct.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librdft.a libtool: link: ( cd ".libs" && rm -f "librdft.la" && ln -s "../librdft.la" "librdft.la" ) make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' Making all in reodft make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT conf.lo -MD -MP -MF .deps/conf.Tpo -c -o conf.lo conf.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT conf.lo -MD -MP -MF .deps/conf.Tpo -c conf.c -o conf.o mv -f .deps/conf.Tpo .deps/conf.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT reodft010e-r2hc.lo -MD -MP -MF .deps/reodft010e-r2hc.Tpo -c -o reodft010e-r2hc.lo reodft010e-r2hc.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT reodft010e-r2hc.lo -MD -MP -MF .deps/reodft010e-r2hc.Tpo -c reodft010e-r2hc.c -o reodft010e-r2hc.o mv -f .deps/reodft010e-r2hc.Tpo .deps/reodft010e-r2hc.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT reodft11e-radix2.lo -MD -MP -MF .deps/reodft11e-radix2.Tpo -c -o reodft11e-radix2.lo reodft11e-radix2.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT reodft11e-radix2.lo -MD -MP -MF .deps/reodft11e-radix2.Tpo -c reodft11e-radix2.c -o reodft11e-radix2.o mv -f .deps/reodft11e-radix2.Tpo .deps/reodft11e-radix2.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT reodft11e-r2hc-odd.lo -MD -MP -MF .deps/reodft11e-r2hc-odd.Tpo -c -o reodft11e-r2hc-odd.lo reodft11e-r2hc-odd.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT reodft11e-r2hc-odd.lo -MD -MP -MF .deps/reodft11e-r2hc-odd.Tpo -c reodft11e-r2hc-odd.c -o reodft11e-r2hc-odd.o mv -f .deps/reodft11e-r2hc-odd.Tpo .deps/reodft11e-r2hc-odd.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT redft00e-r2hc-pad.lo -MD -MP -MF .deps/redft00e-r2hc-pad.Tpo -c -o redft00e-r2hc-pad.lo redft00e-r2hc-pad.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT redft00e-r2hc-pad.lo -MD -MP -MF .deps/redft00e-r2hc-pad.Tpo -c redft00e-r2hc-pad.c -o redft00e-r2hc-pad.o mv -f .deps/redft00e-r2hc-pad.Tpo .deps/redft00e-r2hc-pad.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT rodft00e-r2hc-pad.lo -MD -MP -MF .deps/rodft00e-r2hc-pad.Tpo -c -o rodft00e-r2hc-pad.lo rodft00e-r2hc-pad.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT rodft00e-r2hc-pad.lo -MD -MP -MF .deps/rodft00e-r2hc-pad.Tpo -c rodft00e-r2hc-pad.c -o rodft00e-r2hc-pad.o mv -f .deps/rodft00e-r2hc-pad.Tpo .deps/rodft00e-r2hc-pad.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../rdft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT reodft00e-splitradix.lo -MD -MP -MF .deps/reodft00e-splitradix.Tpo -c -o reodft00e-splitradix.lo reodft00e-splitradix.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../rdft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT reodft00e-splitradix.lo -MD -MP -MF .deps/reodft00e-splitradix.Tpo -c reodft00e-splitradix.c -o reodft00e-splitradix.o mv -f .deps/reodft00e-splitradix.Tpo .deps/reodft00e-splitradix.Plo /bin/bash ../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o libreodft.la  conf.lo reodft010e-r2hc.lo reodft11e-radix2.lo reodft11e-r2hc-odd.lo redft00e-r2hc-pad.lo rodft00e-r2hc-pad.lo reodft00e-splitradix.lo  -lm libtool: link: ar cru .libs/libreodft.a  conf.o reodft010e-r2hc.o reodft11e-radix2.o reodft11e-r2hc-odd.o redft00e-r2hc-pad.o rodft00e-r2hc-pad.o reodft00e-splitradix.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libreodft.a libtool: link: ( cd ".libs" && rm -f "libreodft.la" && ln -s "../libreodft.la" "libreodft.la" ) make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' Making all in api make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' (echo "! Generated automatically.  DO NOT EDIT!"; echo; \          echo "  integer, parameter :: C_FFTW_R2R_KIND = C_INT32_T"; \          grep -v "Generated automatically" ./fftw3.f03.in) > fftw3.f03 make  all-am make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT apiplan.lo -MD -MP -MF .deps/apiplan.Tpo -c -o apiplan.lo apiplan.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT apiplan.lo -MD -MP -MF .deps/apiplan.Tpo -c apiplan.c -o apiplan.o mv -f .deps/apiplan.Tpo .deps/apiplan.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT configure.lo -MD -MP -MF .deps/configure.Tpo -c -o configure.lo configure.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT configure.lo -MD -MP -MF .deps/configure.Tpo -c configure.c -o configure.o mv -f .deps/configure.Tpo .deps/configure.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT execute-dft-c2r.lo -MD -MP -MF .deps/execute-dft-c2r.Tpo -c -o execute-dft-c2r.lo execute-dft-c2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT execute-dft-c2r.lo -MD -MP -MF .deps/execute-dft-c2r.Tpo -c execute-dft-c2r.c -o execute-dft-c2r.o mv -f .deps/execute-dft-c2r.Tpo .deps/execute-dft-c2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT execute-dft-r2c.lo -MD -MP -MF .deps/execute-dft-r2c.Tpo -c -o execute-dft-r2c.lo execute-dft-r2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT execute-dft-r2c.lo -MD -MP -MF .deps/execute-dft-r2c.Tpo -c execute-dft-r2c.c -o execute-dft-r2c.o mv -f .deps/execute-dft-r2c.Tpo .deps/execute-dft-r2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel 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-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-c2r-2d.lo -MD -MP -MF .deps/plan-dft-c2r-2d.Tpo -c plan-dft-c2r-2d.c -o plan-dft-c2r-2d.o mv -f .deps/plan-dft-c2r-2d.Tpo .deps/plan-dft-c2r-2d.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-c2r-3d.lo -MD -MP -MF .deps/plan-dft-c2r-3d.Tpo -c -o plan-dft-c2r-3d.lo plan-dft-c2r-3d.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-c2r-3d.lo -MD -MP -MF .deps/plan-dft-c2r-3d.Tpo -c plan-dft-c2r-3d.c -o plan-dft-c2r-3d.o mv -f .deps/plan-dft-c2r-3d.Tpo .deps/plan-dft-c2r-3d.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. 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-fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-r2c-1d.lo -MD -MP -MF .deps/plan-dft-r2c-1d.Tpo -c plan-dft-r2c-1d.c -o plan-dft-r2c-1d.o mv -f .deps/plan-dft-r2c-1d.Tpo .deps/plan-dft-r2c-1d.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-r2c-2d.lo -MD -MP -MF .deps/plan-dft-r2c-2d.Tpo -c -o plan-dft-r2c-2d.lo plan-dft-r2c-2d.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-r2c-2d.lo -MD -MP -MF .deps/plan-dft-r2c-2d.Tpo -c plan-dft-r2c-2d.c -o plan-dft-r2c-2d.o mv -f .deps/plan-dft-r2c-2d.Tpo .deps/plan-dft-r2c-2d.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-r2c-3d.lo -MD -MP -MF .deps/plan-dft-r2c-3d.Tpo -c -o plan-dft-r2c-3d.lo plan-dft-r2c-3d.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-r2c-3d.lo -MD -MP -MF .deps/plan-dft-r2c-3d.Tpo -c plan-dft-r2c-3d.c -o plan-dft-r2c-3d.o mv -f .deps/plan-dft-r2c-3d.Tpo .deps/plan-dft-r2c-3d.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-r2c.lo -MD -MP -MF .deps/plan-dft-r2c.Tpo -c -o plan-dft-r2c.lo plan-dft-r2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft-r2c.lo -MD -MP -MF .deps/plan-dft-r2c.Tpo -c plan-dft-r2c.c -o plan-dft-r2c.o mv -f .deps/plan-dft-r2c.Tpo .deps/plan-dft-r2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft.lo -MD -MP -MF .deps/plan-dft.Tpo -c -o plan-dft.lo plan-dft.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-dft.lo -MD -MP -MF .deps/plan-dft.Tpo -c plan-dft.c -o plan-dft.o mv -f .deps/plan-dft.Tpo .deps/plan-dft.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-dft-c2r.lo -MD -MP -MF .deps/plan-guru-dft-c2r.Tpo -c -o plan-guru-dft-c2r.lo plan-guru-dft-c2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-dft-c2r.lo -MD -MP -MF .deps/plan-guru-dft-c2r.Tpo -c plan-guru-dft-c2r.c -o plan-guru-dft-c2r.o mv -f .deps/plan-guru-dft-c2r.Tpo .deps/plan-guru-dft-c2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-dft-r2c.lo -MD -MP -MF .deps/plan-guru-dft-r2c.Tpo -c -o plan-guru-dft-r2c.lo plan-guru-dft-r2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-dft-r2c.lo -MD -MP -MF .deps/plan-guru-dft-r2c.Tpo -c plan-guru-dft-r2c.c -o plan-guru-dft-r2c.o mv -f .deps/plan-guru-dft-r2c.Tpo .deps/plan-guru-dft-r2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-dft.lo -MD -MP -MF .deps/plan-guru-dft.Tpo -c -o plan-guru-dft.lo plan-guru-dft.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-dft.lo -MD -MP -MF .deps/plan-guru-dft.Tpo -c plan-guru-dft.c -o plan-guru-dft.o mv -f .deps/plan-guru-dft.Tpo .deps/plan-guru-dft.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-r2r.lo -MD -MP -MF .deps/plan-guru-r2r.Tpo -c -o plan-guru-r2r.lo plan-guru-r2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-r2r.lo -MD -MP -MF .deps/plan-guru-r2r.Tpo -c plan-guru-r2r.c -o plan-guru-r2r.o mv -f .deps/plan-guru-r2r.Tpo .deps/plan-guru-r2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-split-dft-c2r.lo -MD -MP -MF .deps/plan-guru-split-dft-c2r.Tpo -c -o plan-guru-split-dft-c2r.lo plan-guru-split-dft-c2r.c libtool: 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.deps/plan-guru-split-dft-r2c.Tpo -c plan-guru-split-dft-r2c.c -o plan-guru-split-dft-r2c.o mv -f .deps/plan-guru-split-dft-r2c.Tpo .deps/plan-guru-split-dft-r2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-split-dft.lo -MD -MP -MF .deps/plan-guru-split-dft.Tpo -c -o plan-guru-split-dft.lo plan-guru-split-dft.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru-split-dft.lo -MD -MP -MF .deps/plan-guru-split-dft.Tpo -c plan-guru-split-dft.c -o plan-guru-split-dft.o mv -f .deps/plan-guru-split-dft.Tpo .deps/plan-guru-split-dft.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-many-dft-c2r.lo -MD -MP -MF .deps/plan-many-dft-c2r.Tpo -c -o plan-many-dft-c2r.lo plan-many-dft-c2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-many-dft-c2r.lo -MD -MP -MF .deps/plan-many-dft-c2r.Tpo -c plan-many-dft-c2r.c -o plan-many-dft-c2r.o mv -f .deps/plan-many-dft-c2r.Tpo .deps/plan-many-dft-c2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-many-dft-r2c.lo -MD -MP -MF .deps/plan-many-dft-r2c.Tpo -c -o plan-many-dft-r2c.lo plan-many-dft-r2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-many-dft-r2c.lo -MD -MP -MF .deps/plan-many-dft-r2c.Tpo -c plan-many-dft-r2c.c -o plan-many-dft-r2c.o mv -f .deps/plan-many-dft-r2c.Tpo .deps/plan-many-dft-r2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-many-dft.lo -MD -MP -MF .deps/plan-many-dft.Tpo -c -o plan-many-dft.lo plan-many-dft.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-many-dft.lo -MD -MP -MF .deps/plan-many-dft.Tpo -c plan-many-dft.c -o plan-many-dft.o mv -f .deps/plan-many-dft.Tpo .deps/plan-many-dft.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-many-r2r.lo -MD -MP -MF .deps/plan-many-r2r.Tpo -c -o plan-many-r2r.lo plan-many-r2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-many-r2r.lo -MD -MP -MF .deps/plan-many-r2r.Tpo -c plan-many-r2r.c -o plan-many-r2r.o mv -f .deps/plan-many-r2r.Tpo .deps/plan-many-r2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-r2r-1d.lo -MD -MP -MF .deps/plan-r2r-1d.Tpo -c -o plan-r2r-1d.lo plan-r2r-1d.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-r2r-1d.lo -MD -MP -MF .deps/plan-r2r-1d.Tpo -c plan-r2r-1d.c -o plan-r2r-1d.o mv -f .deps/plan-r2r-1d.Tpo .deps/plan-r2r-1d.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-r2r-2d.lo -MD -MP -MF .deps/plan-r2r-2d.Tpo -c -o plan-r2r-2d.lo plan-r2r-2d.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-r2r-2d.lo -MD -MP -MF .deps/plan-r2r-2d.Tpo -c plan-r2r-2d.c -o plan-r2r-2d.o mv -f .deps/plan-r2r-2d.Tpo .deps/plan-r2r-2d.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-r2r-3d.lo -MD -MP -MF .deps/plan-r2r-3d.Tpo -c -o plan-r2r-3d.lo plan-r2r-3d.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-r2r-3d.lo -MD -MP -MF .deps/plan-r2r-3d.Tpo -c plan-r2r-3d.c -o plan-r2r-3d.o mv -f .deps/plan-r2r-3d.Tpo .deps/plan-r2r-3d.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-r2r.lo -MD -MP -MF .deps/plan-r2r.Tpo -c -o plan-r2r.lo plan-r2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-r2r.lo -MD -MP -MF .deps/plan-r2r.Tpo -c plan-r2r.c -o plan-r2r.o mv -f .deps/plan-r2r.Tpo .deps/plan-r2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT print-plan.lo -MD -MP -MF .deps/print-plan.Tpo -c -o print-plan.lo print-plan.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT print-plan.lo -MD -MP -MF .deps/print-plan.Tpo -c print-plan.c -o print-plan.o mv -f .deps/print-plan.Tpo .deps/print-plan.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT rdft2-pad.lo -MD -MP -MF .deps/rdft2-pad.Tpo -c -o rdft2-pad.lo rdft2-pad.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT rdft2-pad.lo -MD -MP -MF .deps/rdft2-pad.Tpo -c rdft2-pad.c -o rdft2-pad.o mv -f .deps/rdft2-pad.Tpo .deps/rdft2-pad.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT the-planner.lo -MD -MP -MF .deps/the-planner.Tpo -c -o the-planner.lo the-planner.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT the-planner.lo -MD -MP -MF .deps/the-planner.Tpo -c the-planner.c -o the-planner.o mv -f .deps/the-planner.Tpo .deps/the-planner.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT version.lo -MD -MP -MF .deps/version.Tpo -c -o version.lo version.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT version.lo -MD -MP -MF .deps/version.Tpo -c version.c -o version.o mv -f .deps/version.Tpo .deps/version.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-dft-c2r.lo -MD -MP -MF .deps/plan-guru64-dft-c2r.Tpo -c -o plan-guru64-dft-c2r.lo plan-guru64-dft-c2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-dft-c2r.lo -MD -MP -MF .deps/plan-guru64-dft-c2r.Tpo -c plan-guru64-dft-c2r.c -o plan-guru64-dft-c2r.o mv -f .deps/plan-guru64-dft-c2r.Tpo .deps/plan-guru64-dft-c2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-dft-r2c.lo -MD -MP -MF .deps/plan-guru64-dft-r2c.Tpo -c -o plan-guru64-dft-r2c.lo plan-guru64-dft-r2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-dft-r2c.lo -MD -MP -MF .deps/plan-guru64-dft-r2c.Tpo -c plan-guru64-dft-r2c.c -o plan-guru64-dft-r2c.o mv -f .deps/plan-guru64-dft-r2c.Tpo .deps/plan-guru64-dft-r2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-dft.lo -MD -MP -MF .deps/plan-guru64-dft.Tpo -c -o plan-guru64-dft.lo plan-guru64-dft.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-dft.lo -MD -MP -MF .deps/plan-guru64-dft.Tpo -c plan-guru64-dft.c -o plan-guru64-dft.o mv -f .deps/plan-guru64-dft.Tpo .deps/plan-guru64-dft.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-r2r.lo -MD -MP -MF .deps/plan-guru64-r2r.Tpo -c -o plan-guru64-r2r.lo plan-guru64-r2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-r2r.lo -MD -MP -MF .deps/plan-guru64-r2r.Tpo -c plan-guru64-r2r.c -o plan-guru64-r2r.o mv -f .deps/plan-guru64-r2r.Tpo .deps/plan-guru64-r2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-split-dft-c2r.lo -MD -MP -MF .deps/plan-guru64-split-dft-c2r.Tpo -c -o plan-guru64-split-dft-c2r.lo plan-guru64-split-dft-c2r.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-split-dft-c2r.lo -MD -MP -MF .deps/plan-guru64-split-dft-c2r.Tpo -c plan-guru64-split-dft-c2r.c -o plan-guru64-split-dft-c2r.o mv -f .deps/plan-guru64-split-dft-c2r.Tpo .deps/plan-guru64-split-dft-c2r.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-split-dft-r2c.lo -MD -MP -MF .deps/plan-guru64-split-dft-r2c.Tpo -c -o plan-guru64-split-dft-r2c.lo plan-guru64-split-dft-r2c.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-split-dft-r2c.lo -MD -MP -MF .deps/plan-guru64-split-dft-r2c.Tpo -c plan-guru64-split-dft-r2c.c -o plan-guru64-split-dft-r2c.o mv -f .deps/plan-guru64-split-dft-r2c.Tpo .deps/plan-guru64-split-dft-r2c.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-split-dft.lo -MD -MP -MF .deps/plan-guru64-split-dft.Tpo -c -o plan-guru64-split-dft.lo plan-guru64-split-dft.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT plan-guru64-split-dft.lo -MD -MP -MF .deps/plan-guru64-split-dft.Tpo -c plan-guru64-split-dft.c -o plan-guru64-split-dft.o mv -f .deps/plan-guru64-split-dft.Tpo .deps/plan-guru64-split-dft.Plo /bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../dft -I../rdft -I../reodft   -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT mktensor-iodims64.lo -MD -MP -MF .deps/mktensor-iodims64.Tpo -c -o mktensor-iodims64.lo mktensor-iodims64.c libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../dft -I../rdft -I../reodft -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT mktensor-iodims64.lo -MD -MP -MF .deps/mktensor-iodims64.Tpo -c mktensor-iodims64.c -o mktensor-iodims64.o mv -f .deps/mktensor-iodims64.Tpo .deps/mktensor-iodims64.Plo /bin/bash ../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o libapi.la  apiplan.lo configure.lo execute-dft-c2r.lo execute-dft-r2c.lo execute-dft.lo execute-r2r.lo execute-split-dft-c2r.lo execute-split-dft-r2c.lo execute-split-dft.lo execute.lo export-wisdom-to-file.lo export-wisdom-to-string.lo export-wisdom.lo f77api.lo flops.lo forget-wisdom.lo import-system-wisdom.lo import-wisdom-from-file.lo import-wisdom-from-string.lo import-wisdom.lo malloc.lo map-r2r-kind.lo mapflags.lo mkprinter-file.lo mktensor-iodims.lo mktensor-rowmajor.lo plan-dft-1d.lo plan-dft-2d.lo plan-dft-3d.lo plan-dft-c2r-1d.lo plan-dft-c2r-2d.lo plan-dft-c2r-3d.lo plan-dft-c2r.lo plan-dft-r2c-1d.lo plan-dft-r2c-2d.lo plan-dft-r2c-3d.lo plan-dft-r2c.lo plan-dft.lo plan-guru-dft-c2r.lo plan-guru-dft-r2c.lo plan-guru-dft.lo plan-guru-r2r.lo plan-guru-split-dft-c2r.lo plan-guru-split-dft-r2c.lo plan-guru-split-dft.lo plan-many-dft-c2r.lo plan-many-dft-r2c.lo plan-many-dft.lo plan-many-r2r.lo plan-r2r-1d.lo plan-r2r-2d.lo plan-r2r-3d.lo plan-r2r.lo print-plan.lo rdft2-pad.lo the-planner.lo version.lo plan-guru64-dft-c2r.lo plan-guru64-dft-r2c.lo plan-guru64-dft.lo plan-guru64-r2r.lo plan-guru64-split-dft-c2r.lo plan-guru64-split-dft-r2c.lo plan-guru64-split-dft.lo mktensor-iodims64.lo  -lm libtool: link: ar cru .libs/libapi.a  apiplan.o configure.o execute-dft-c2r.o execute-dft-r2c.o execute-dft.o execute-r2r.o execute-split-dft-c2r.o execute-split-dft-r2c.o execute-split-dft.o execute.o export-wisdom-to-file.o export-wisdom-to-string.o export-wisdom.o f77api.o flops.o forget-wisdom.o import-system-wisdom.o import-wisdom-from-file.o import-wisdom-from-string.o import-wisdom.o malloc.o map-r2r-kind.o mapflags.o mkprinter-file.o mktensor-iodims.o mktensor-rowmajor.o plan-dft-1d.o plan-dft-2d.o plan-dft-3d.o plan-dft-c2r-1d.o plan-dft-c2r-2d.o plan-dft-c2r-3d.o plan-dft-c2r.o plan-dft-r2c-1d.o plan-dft-r2c-2d.o plan-dft-r2c-3d.o plan-dft-r2c.o plan-dft.o plan-guru-dft-c2r.o plan-guru-dft-r2c.o plan-guru-dft.o plan-guru-r2r.o plan-guru-split-dft-c2r.o plan-guru-split-dft-r2c.o plan-guru-split-dft.o plan-many-dft-c2r.o plan-many-dft-r2c.o plan-many-dft.o plan-many-r2r.o plan-r2r-1d.o plan-r2r-2d.o plan-r2r-3d.o plan-r2r.o print-plan.o rdft2-pad.o the-planner.o version.o plan-guru64-dft-c2r.o plan-guru64-dft-r2c.o plan-guru64-dft.o plan-guru64-r2r.o plan-guru64-split-dft-c2r.o plan-guru64-split-dft-r2c.o plan-guru64-split-dft.o mktensor-iodims64.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libapi.a libtool: link: ( cd ".libs" && rm -f "libapi.la" && ln -s "../libapi.la" "libapi.la" ) make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' Making all in threads make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/threads' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/threads' Making all in libbench2 make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/libbench2' gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT after-ccopy-from.o -MD -MP -MF .deps/after-ccopy-from.Tpo -c -o after-ccopy-from.o after-ccopy-from.c mv -f .deps/after-ccopy-from.Tpo .deps/after-ccopy-from.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT after-ccopy-to.o -MD -MP -MF .deps/after-ccopy-to.Tpo -c -o after-ccopy-to.o after-ccopy-to.c mv -f .deps/after-ccopy-to.Tpo .deps/after-ccopy-to.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT after-hccopy-from.o -MD -MP -MF .deps/after-hccopy-from.Tpo -c -o after-hccopy-from.o after-hccopy-from.c mv -f .deps/after-hccopy-from.Tpo .deps/after-hccopy-from.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT after-hccopy-to.o -MD -MP -MF .deps/after-hccopy-to.Tpo -c -o after-hccopy-to.o after-hccopy-to.c mv -f .deps/after-hccopy-to.Tpo .deps/after-hccopy-to.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT after-rcopy-from.o -MD -MP -MF .deps/after-rcopy-from.Tpo -c -o after-rcopy-from.o after-rcopy-from.c mv -f .deps/after-rcopy-from.Tpo .deps/after-rcopy-from.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT after-rcopy-to.o -MD -MP -MF .deps/after-rcopy-to.Tpo -c -o after-rcopy-to.o after-rcopy-to.c mv -f .deps/after-rcopy-to.Tpo .deps/after-rcopy-to.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT aligned-main.o -MD -MP -MF .deps/aligned-main.Tpo -c -o aligned-main.o aligned-main.c mv -f .deps/aligned-main.Tpo .deps/aligned-main.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT allocate.o -MD -MP -MF .deps/allocate.Tpo -c -o allocate.o allocate.c mv -f .deps/allocate.Tpo .deps/allocate.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT aset.o -MD -MP -MF .deps/aset.Tpo -c -o aset.o aset.c mv -f .deps/aset.Tpo .deps/aset.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT bench-cost-postprocess.o -MD -MP -MF .deps/bench-cost-postprocess.Tpo -c -o bench-cost-postprocess.o bench-cost-postprocess.c mv -f .deps/bench-cost-postprocess.Tpo .deps/bench-cost-postprocess.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT bench-exit.o -MD -MP -MF .deps/bench-exit.Tpo -c -o bench-exit.o bench-exit.c mv -f .deps/bench-exit.Tpo .deps/bench-exit.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT bench-main.o -MD -MP -MF .deps/bench-main.Tpo -c -o bench-main.o bench-main.c mv -f .deps/bench-main.Tpo .deps/bench-main.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT can-do.o -MD -MP -MF .deps/can-do.Tpo -c -o can-do.o can-do.c mv -f .deps/can-do.Tpo .deps/can-do.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT caset.o -MD -MP -MF .deps/caset.Tpo -c -o caset.o caset.c mv -f .deps/caset.Tpo .deps/caset.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT dotens2.o -MD -MP -MF .deps/dotens2.Tpo -c -o dotens2.o dotens2.c mv -f .deps/dotens2.Tpo .deps/dotens2.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT info.o -MD -MP -MF .deps/info.Tpo -c -o info.o info.c mv -f .deps/info.Tpo .deps/info.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c mv -f .deps/main.Tpo .deps/main.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT mflops.o -MD -MP -MF .deps/mflops.Tpo -c -o mflops.o mflops.c mv -f .deps/mflops.Tpo .deps/mflops.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT mp.o -MD -MP -MF .deps/mp.Tpo -c -o mp.o mp.c mv -f .deps/mp.Tpo .deps/mp.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT ovtpvt.o -MD -MP -MF .deps/ovtpvt.Tpo -c -o ovtpvt.o ovtpvt.c mv -f .deps/ovtpvt.Tpo .deps/ovtpvt.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT pow2.o -MD -MP -MF .deps/pow2.Tpo -c -o pow2.o pow2.c mv -f .deps/pow2.Tpo .deps/pow2.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT problem.o -MD -MP -MF .deps/problem.Tpo -c -o problem.o problem.c mv -f .deps/problem.Tpo .deps/problem.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT report.o -MD -MP -MF .deps/report.Tpo -c -o report.o report.c mv -f .deps/report.Tpo .deps/report.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT speed.o -MD -MP -MF .deps/speed.Tpo -c -o speed.o speed.c mv -f .deps/speed.Tpo .deps/speed.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT tensor.o -MD -MP -MF .deps/tensor.Tpo -c -o tensor.o tensor.c mv -f .deps/tensor.Tpo .deps/tensor.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT timer.o -MD -MP -MF .deps/timer.Tpo -c -o timer.o timer.c mv -f .deps/timer.Tpo .deps/timer.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT useropt.o -MD -MP -MF .deps/useropt.Tpo -c -o useropt.o useropt.c mv -f .deps/useropt.Tpo .deps/useropt.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT util.o -MD -MP -MF .deps/util.Tpo -c -o util.o util.c mv -f .deps/util.Tpo .deps/util.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT verify-dft.o -MD -MP -MF .deps/verify-dft.Tpo -c -o verify-dft.o verify-dft.c mv -f .deps/verify-dft.Tpo .deps/verify-dft.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT verify-lib.o -MD -MP -MF .deps/verify-lib.Tpo -c -o verify-lib.o verify-lib.c mv -f .deps/verify-lib.Tpo .deps/verify-lib.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT verify-r2r.o -MD -MP -MF .deps/verify-r2r.Tpo -c -o verify-r2r.o verify-r2r.c mv -f .deps/verify-r2r.Tpo .deps/verify-r2r.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT verify-rdft2.o -MD -MP -MF .deps/verify-rdft2.Tpo -c -o verify-rdft2.o verify-rdft2.c mv -f .deps/verify-rdft2.Tpo .deps/verify-rdft2.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT verify.o -MD -MP -MF .deps/verify.Tpo -c -o verify.o verify.c mv -f .deps/verify.Tpo .deps/verify.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT zero.o -MD -MP -MF .deps/zero.Tpo -c -o zero.o zero.c mv -f .deps/zero.Tpo .deps/zero.Po gcc -DHAVE_CONFIG_H -I. -I..     -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT my-getopt.o -MD -MP -MF .deps/my-getopt.Tpo -c -o my-getopt.o my-getopt.c mv -f .deps/my-getopt.Tpo .deps/my-getopt.Po rm -f libbench2.a ar cru libbench2.a after-ccopy-from.o after-ccopy-to.o after-hccopy-from.o after-hccopy-to.o after-rcopy-from.o after-rcopy-to.o aligned-main.o allocate.o aset.o bench-cost-postprocess.o bench-exit.o bench-main.o can-do.o caset.o dotens2.o info.o main.o mflops.o mp.o ovtpvt.o pow2.o problem.o report.o speed.o tensor.o timer.o useropt.o util.o verify-dft.o verify-lib.o verify-r2r.o verify-rdft2.o verify.o zero.o my-getopt.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libbench2.a make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/libbench2' Making all in . make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' /bin/bash ./libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -no-undefined -version-info 6:0:3  -o libfftw3.la -rpath /mnt/c/Users/Alen/Documents/Research/amber18//lib  kernel/libkernel.la dft/libdft.la dft/scalar/libdft_scalar.la dft/scalar/codelets/libdft_scalar_codelets.la rdft/librdft.la rdft/scalar/librdft_scalar.la rdft/scalar/r2cf/librdft_scalar_r2cf.la rdft/scalar/r2cb/librdft_scalar_r2cb.la rdft/scalar/r2r/librdft_scalar_r2r.la reodft/libreodft.la api/libapi.la simd-support/libsimd_support.la simd-support/libsimd_sse2_nonportable.la dft/simd/sse2/libdft_sse2_codelets.la rdft/simd/sse2/librdft_sse2_codelets.la    -lm libtool: link: (cd .libs/libfftw3.lax/libkernel.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/kernel/.libs/libkernel.a") libtool: link: (cd .libs/libfftw3.lax/libdft.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/.libs/libdft.a") libtool: link: (cd .libs/libfftw3.lax/libdft_scalar.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar/.libs/libdft_scalar.a") libtool: link: (cd .libs/libfftw3.lax/libdft_scalar_codelets.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar/codelets/.libs/libdft_scalar_codelets.a") libtool: link: (cd .libs/libfftw3.lax/librdft.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/.libs/librdft.a") libtool: link: (cd .libs/libfftw3.lax/librdft_scalar.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/.libs/librdft_scalar.a") libtool: link: (cd .libs/libfftw3.lax/librdft_scalar_r2cf.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf/.libs/librdft_scalar_r2cf.a") libtool: link: (cd .libs/libfftw3.lax/librdft_scalar_r2cb.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb/.libs/librdft_scalar_r2cb.a") libtool: link: (cd .libs/libfftw3.lax/librdft_scalar_r2r.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r/.libs/librdft_scalar_r2r.a") libtool: link: (cd .libs/libfftw3.lax/libreodft.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft/.libs/libreodft.a") libtool: link: (cd .libs/libfftw3.lax/libapi.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api/.libs/libapi.a") libtool: link: (cd .libs/libfftw3.lax/libsimd_support.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/simd-support/.libs/libsimd_support.a") libtool: link: (cd .libs/libfftw3.lax/libsimd_sse2_nonportable.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/simd-support/.libs/libsimd_sse2_nonportable.a") libtool: link: (cd .libs/libfftw3.lax/libdft_sse2_codelets.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/sse2/.libs/libdft_sse2_codelets.a") libtool: link: (cd .libs/libfftw3.lax/librdft_sse2_codelets.a && ar x "/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2/.libs/librdft_sse2_codelets.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libfftw3.lax/libdft.a/buffered.o .libs/libfftw3.lax/lt1-buffered.o || cp .libs/libfftw3.lax/libdft.a/buffered.o .libs/libfftw3.lax/lt1-buffered.o libtool: link: ln .libs/libfftw3.lax/libdft.a/ct.o .libs/libfftw3.lax/lt2-ct.o || cp .libs/libfftw3.lax/libdft.a/ct.o .libs/libfftw3.lax/lt2-ct.o libtool: link: ln .libs/libfftw3.lax/libdft.a/plan.o .libs/libfftw3.lax/lt3-plan.o || cp .libs/libfftw3.lax/libdft.a/plan.o .libs/libfftw3.lax/lt3-plan.o libtool: link: ln .libs/libfftw3.lax/libdft.a/problem.o .libs/libfftw3.lax/lt4-problem.o || cp .libs/libfftw3.lax/libdft.a/problem.o .libs/libfftw3.lax/lt4-problem.o libtool: link: ln .libs/libfftw3.lax/libdft.a/rader.o .libs/libfftw3.lax/lt5-rader.o || cp .libs/libfftw3.lax/libdft.a/rader.o .libs/libfftw3.lax/lt5-rader.o libtool: link: ln .libs/libfftw3.lax/librdft.a/buffered.o .libs/libfftw3.lax/lt6-buffered.o || cp .libs/libfftw3.lax/librdft.a/buffered.o .libs/libfftw3.lax/lt6-buffered.o libtool: link: ln .libs/libfftw3.lax/librdft.a/conf.o .libs/libfftw3.lax/lt7-conf.o || cp .libs/libfftw3.lax/librdft.a/conf.o .libs/libfftw3.lax/lt7-conf.o libtool: link: ln .libs/libfftw3.lax/librdft.a/generic.o .libs/libfftw3.lax/lt8-generic.o || cp .libs/libfftw3.lax/librdft.a/generic.o .libs/libfftw3.lax/lt8-generic.o libtool: link: ln .libs/libfftw3.lax/librdft.a/indirect.o .libs/libfftw3.lax/lt9-indirect.o || cp .libs/libfftw3.lax/librdft.a/indirect.o .libs/libfftw3.lax/lt9-indirect.o libtool: link: ln .libs/libfftw3.lax/librdft.a/nop.o .libs/libfftw3.lax/lt10-nop.o || cp .libs/libfftw3.lax/librdft.a/nop.o .libs/libfftw3.lax/lt10-nop.o libtool: link: ln .libs/libfftw3.lax/librdft.a/plan.o .libs/libfftw3.lax/lt11-plan.o || cp .libs/libfftw3.lax/librdft.a/plan.o .libs/libfftw3.lax/lt11-plan.o libtool: link: ln .libs/libfftw3.lax/librdft.a/problem.o .libs/libfftw3.lax/lt12-problem.o || cp .libs/libfftw3.lax/librdft.a/problem.o .libs/libfftw3.lax/lt12-problem.o libtool: link: ln .libs/libfftw3.lax/librdft.a/rank-geq2.o .libs/libfftw3.lax/lt13-rank-geq2.o || cp .libs/libfftw3.lax/librdft.a/rank-geq2.o .libs/libfftw3.lax/lt13-rank-geq2.o libtool: link: ln .libs/libfftw3.lax/librdft.a/solve.o .libs/libfftw3.lax/lt14-solve.o || cp .libs/libfftw3.lax/librdft.a/solve.o .libs/libfftw3.lax/lt14-solve.o libtool: link: ln .libs/libfftw3.lax/librdft.a/vrank-geq1.o .libs/libfftw3.lax/lt15-vrank-geq1.o || cp .libs/libfftw3.lax/librdft.a/vrank-geq1.o .libs/libfftw3.lax/lt15-vrank-geq1.o libtool: link: ln .libs/libfftw3.lax/librdft_scalar_r2cf.a/codlist.o .libs/libfftw3.lax/lt16-codlist.o || cp .libs/libfftw3.lax/librdft_scalar_r2cf.a/codlist.o .libs/libfftw3.lax/lt16-codlist.o libtool: link: ln .libs/libfftw3.lax/librdft_scalar_r2cb.a/codlist.o .libs/libfftw3.lax/lt17-codlist.o || cp .libs/libfftw3.lax/librdft_scalar_r2cb.a/codlist.o .libs/libfftw3.lax/lt17-codlist.o libtool: link: ln .libs/libfftw3.lax/librdft_scalar_r2r.a/codlist.o .libs/libfftw3.lax/lt18-codlist.o || cp .libs/libfftw3.lax/librdft_scalar_r2r.a/codlist.o .libs/libfftw3.lax/lt18-codlist.o libtool: link: ln .libs/libfftw3.lax/libreodft.a/conf.o .libs/libfftw3.lax/lt19-conf.o || cp .libs/libfftw3.lax/libreodft.a/conf.o .libs/libfftw3.lax/lt19-conf.o libtool: link: ln .libs/libfftw3.lax/libdft_sse2_codelets.a/codlist.o .libs/libfftw3.lax/lt20-codlist.o || cp .libs/libfftw3.lax/libdft_sse2_codelets.a/codlist.o .libs/libfftw3.lax/lt20-codlist.o libtool: link: ln .libs/libfftw3.lax/librdft_sse2_codelets.a/codlist.o .libs/libfftw3.lax/lt21-codlist.o || cp .libs/libfftw3.lax/librdft_sse2_codelets.a/codlist.o .libs/libfftw3.lax/lt21-codlist.o libtool: link: ln .libs/libfftw3.lax/librdft_sse2_codelets.a/genus.o .libs/libfftw3.lax/lt22-genus.o || cp .libs/libfftw3.lax/librdft_sse2_codelets.a/genus.o .libs/libfftw3.lax/lt22-genus.o libtool: link: ar cru .libs/libfftw3.a .libs/libfftw3.lax/libkernel.a/align.o .libs/libfftw3.lax/libkernel.a/alloc.o .libs/libfftw3.lax/libkernel.a/assert.o .libs/libfftw3.lax/libkernel.a/awake.o .libs/libfftw3.lax/libkernel.a/buffered.o .libs/libfftw3.lax/libkernel.a/cpy1d.o .libs/libfftw3.lax/libkernel.a/cpy2d-pair.o .libs/libfftw3.lax/libkernel.a/cpy2d.o .libs/libfftw3.lax/libkernel.a/ct.o .libs/libfftw3.lax/libkernel.a/debug.o .libs/libfftw3.lax/libkernel.a/extract-reim.o .libs/libfftw3.lax/libkernel.a/hash.o .libs/libfftw3.lax/libkernel.a/iabs.o .libs/libfftw3.lax/libkernel.a/kalloc.o .libs/libfftw3.lax/libkernel.a/md5-1.o .libs/libfftw3.lax/libkernel.a/md5.o .libs/libfftw3.lax/libkernel.a/minmax.o .libs/libfftw3.lax/libkernel.a/ops.o .libs/libfftw3.lax/libkernel.a/pickdim.o .libs/libfftw3.lax/libkernel.a/plan.o .libs/libfftw3.lax/libkernel.a/planner.o .libs/libfftw3.lax/libkernel.a/primes.o .libs/libfftw3.lax/libkernel.a/print.o .libs/libfftw3.lax/libkernel.a/problem.o .libs/libfftw3.lax/libkernel.a/rader.o .libs/libfftw3.lax/libkernel.a/scan.o .libs/libfftw3.lax/libkernel.a/solver.o .libs/libfftw3.lax/libkernel.a/solvtab.o .libs/libfftw3.lax/libkernel.a/stride.o .libs/libfftw3.lax/libkernel.a/tensor.o .libs/libfftw3.lax/libkernel.a/tensor1.o .libs/libfftw3.lax/libkernel.a/tensor2.o .libs/libfftw3.lax/libkernel.a/tensor3.o .libs/libfftw3.lax/libkernel.a/tensor4.o .libs/libfftw3.lax/libkernel.a/tensor5.o .libs/libfftw3.lax/libkernel.a/tensor7.o .libs/libfftw3.lax/libkernel.a/tensor8.o .libs/libfftw3.lax/libkernel.a/tensor9.o .libs/libfftw3.lax/libkernel.a/tile2d.o .libs/libfftw3.lax/libkernel.a/timer.o .libs/libfftw3.lax/libkernel.a/transpose.o .libs/libfftw3.lax/libkernel.a/trig.o .libs/libfftw3.lax/libkernel.a/twiddle.o .libs/libfftw3.lax/libdft.a/bluestein.o .libs/libfftw3.lax/lt1-buffered.o .libs/libfftw3.lax/libdft.a/conf.o .libs/libfftw3.lax/lt2-ct.o .libs/libfftw3.lax/libdft.a/dftw-direct.o .libs/libfftw3.lax/libdft.a/dftw-directsq.o .libs/libfftw3.lax/libdft.a/dftw-generic.o .libs/libfftw3.lax/libdft.a/dftw-genericbuf.o .libs/libfftw3.lax/libdft.a/direct.o .libs/libfftw3.lax/libdft.a/generic.o .libs/libfftw3.lax/libdft.a/indirect-transpose.o .libs/libfftw3.lax/libdft.a/indirect.o .libs/libfftw3.lax/libdft.a/kdft-dif.o .libs/libfftw3.lax/libdft.a/kdft-difsq.o .libs/libfftw3.lax/libdft.a/kdft-dit.o .libs/libfftw3.lax/libdft.a/kdft.o .libs/libfftw3.lax/libdft.a/nop.o .libs/libfftw3.lax/lt3-plan.o .libs/libfftw3.lax/lt4-problem.o .libs/libfftw3.lax/lt5-rader.o .libs/libfftw3.lax/libdft.a/rank-geq2.o .libs/libfftw3.lax/libdft.a/solve.o .libs/libfftw3.lax/libdft.a/vrank-geq1.o .libs/libfftw3.lax/libdft.a/zero.o .libs/libfftw3.lax/libdft_scalar.a/n.o .libs/libfftw3.lax/libdft_scalar.a/t.o .libs/libfftw3.lax/libdft_scalar_codelets.a/codlist.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_10.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_11.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_12.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_13.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_14.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_15.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_16.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_2.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_20.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_25.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_3.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_32.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_4.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_5.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_6.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_64.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_7.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_8.o .libs/libfftw3.lax/libdft_scalar_codelets.a/n1_9.o .libs/libfftw3.lax/libdft_scalar_codelets.a/q1_2.o .libs/libfftw3.lax/libdft_scalar_codelets.a/q1_3.o .libs/libfftw3.lax/libdft_scalar_codelets.a/q1_4.o .libs/libfftw3.lax/libdft_scalar_codelets.a/q1_5.o .libs/libfftw3.lax/libdft_scalar_codelets.a/q1_6.o .libs/libfftw3.lax/libdft_scalar_codelets.a/q1_8.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_10.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_12.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_15.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_16.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_2.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_20.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_25.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_3.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_32.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_4.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_5.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_6.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_64.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_7.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_8.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t1_9.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_10.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_16.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_20.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_25.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_32.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_4.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_5.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_64.o .libs/libfftw3.lax/libdft_scalar_codelets.a/t2_8.o .libs/libfftw3.lax/lt6-buffered.o .libs/libfftw3.lax/librdft.a/buffered2.o .libs/libfftw3.lax/lt7-conf.o .libs/libfftw3.lax/librdft.a/ct-hc2c-direct.o .libs/libfftw3.lax/librdft.a/ct-hc2c.o .libs/libfftw3.lax/librdft.a/dft-r2hc.o .libs/libfftw3.lax/librdft.a/dht-r2hc.o .libs/libfftw3.lax/librdft.a/dht-rader.o .libs/libfftw3.lax/librdft.a/direct-r2c.o .libs/libfftw3.lax/librdft.a/direct-r2r.o .libs/libfftw3.lax/librdft.a/direct2.o .libs/libfftw3.lax/lt8-generic.o .libs/libfftw3.lax/librdft.a/hc2hc-direct.o .libs/libfftw3.lax/librdft.a/hc2hc-generic.o .libs/libfftw3.lax/librdft.a/hc2hc.o .libs/libfftw3.lax/lt9-indirect.o .libs/libfftw3.lax/librdft.a/khc2c.o .libs/libfftw3.lax/librdft.a/khc2hc.o .libs/libfftw3.lax/librdft.a/kr2c.o .libs/libfftw3.lax/librdft.a/kr2r.o .libs/libfftw3.lax/lt10-nop.o .libs/libfftw3.lax/librdft.a/nop2.o .libs/libfftw3.lax/lt11-plan.o .libs/libfftw3.lax/librdft.a/plan2.o .libs/libfftw3.lax/lt12-problem.o .libs/libfftw3.lax/librdft.a/problem2.o .libs/libfftw3.lax/librdft.a/rank-geq2-rdft2.o .libs/libfftw3.lax/lt13-rank-geq2.o .libs/libfftw3.lax/librdft.a/rank0-rdft2.o .libs/libfftw3.lax/librdft.a/rank0.o .libs/libfftw3.lax/librdft.a/rdft-dht.o .libs/libfftw3.lax/librdft.a/rdft2-inplace-strides.o .libs/libfftw3.lax/librdft.a/rdft2-rdft.o .libs/libfftw3.lax/librdft.a/rdft2-strides.o .libs/libfftw3.lax/librdft.a/rdft2-tensor-max-index.o .libs/libfftw3.lax/lt14-solve.o .libs/libfftw3.lax/librdft.a/solve2.o 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.libs/libfftw3.lax/libdft_sse2_codelets.a/t3fv_20.o .libs/libfftw3.lax/libdft_sse2_codelets.a/t3fv_25.o .libs/libfftw3.lax/libdft_sse2_codelets.a/t3fv_32.o .libs/libfftw3.lax/libdft_sse2_codelets.a/t3fv_4.o .libs/libfftw3.lax/libdft_sse2_codelets.a/t3fv_5.o .libs/libfftw3.lax/libdft_sse2_codelets.a/t3fv_8.o .libs/libfftw3.lax/lt21-codlist.o .libs/libfftw3.lax/lt22-genus.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_10.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_12.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_16.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_2.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_20.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_32.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_4.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_6.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cbdftv_8.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_10.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_12.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_16.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_2.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_20.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_32.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_4.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_6.o .libs/libfftw3.lax/librdft_sse2_codelets.a/hc2cfdftv_8.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libfftw3.a libtool: link: rm -fr .libs/libfftw3.lax .libs/libfftw3.lax libtool: link: ( cd ".libs" && rm -f "libfftw3.la" && ln -s "../libfftw3.la" "libfftw3.la" ) cp -f fftw.pc fftw3.pc make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' Making all in tests make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tests' gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../libbench2 -I../dft -I../rdft -I../reodft -I../threads -I../api    -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT bench-bench.o -MD -MP -MF .deps/bench-bench.Tpo -c -o bench-bench.o `test -f 'bench.c' || echo './'`bench.c mv -f .deps/bench-bench.Tpo .deps/bench-bench.Po gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../libbench2 -I../dft -I../rdft -I../reodft -I../threads -I../api    -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT bench-hook.o -MD -MP -MF .deps/bench-hook.Tpo -c -o bench-hook.o `test -f 'hook.c' || echo './'`hook.c mv -f .deps/bench-hook.Tpo .deps/bench-hook.Po gcc -DHAVE_CONFIG_H -I. -I..  -I../kernel -I../libbench2 -I../dft -I../rdft -I../reodft -I../threads -I../api    -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT bench-fftw-bench.o -MD -MP -MF .deps/bench-fftw-bench.Tpo -c -o bench-fftw-bench.o `test -f 'fftw-bench.c' || echo './'`fftw-bench.c mv -f .deps/bench-fftw-bench.Tpo .deps/bench-fftw-bench.Po /bin/bash ../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o bench bench-bench.o bench-hook.o bench-fftw-bench.o  ../libfftw3.la ../libbench2/libbench2.a  -lm libtool: link: gcc -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -o bench bench-bench.o bench-hook.o bench-fftw-bench.o  ../.libs/libfftw3.a ../libbench2/libbench2.a -lm make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tests' Making all in mpi make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' sed 's/C_MPI_FINT//' ./fftw3-mpi.f03.in > fftw3-mpi.f03 make  all-am make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' Making all in doc make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' Making all in FAQ make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc/FAQ' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc/FAQ' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' Making all in tools make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' rm -f fftw-wisdom.1 cp fftw_wisdom.1 fftw-wisdom.1 make  all-am make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' gcc -DHAVE_CONFIG_H -I. -I..  -I../libbench2 -I../api    -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -MT fftw_wisdom-fftw-wisdom.o -MD -MP -MF .deps/fftw_wisdom-fftw-wisdom.Tpo -c -o fftw_wisdom-fftw-wisdom.o `test -f 'fftw-wisdom.c' || echo './'`fftw-wisdom.c mv -f .deps/fftw_wisdom-fftw-wisdom.Tpo .deps/fftw_wisdom-fftw-wisdom.Po /bin/bash ../libtool --tag=CC   --mode=link gcc  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native   -o fftw-wisdom fftw_wisdom-fftw-wisdom.o ../tests/bench-bench.o ../tests/bench-fftw-bench.o  ../libfftw3.la ../libbench2/libbench2.a  -lm libtool: link: gcc -fPIC -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native -o fftw-wisdom fftw_wisdom-fftw-wisdom.o ../tests/bench-bench.o ../tests/bench-fftw-bench.o  ../.libs/libfftw3.a ../libbench2/libbench2.a -lm make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' Making all in m4 make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/m4' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/m4' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' Making install in support make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/support' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/support' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/support' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/support' Making install in kernel make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/kernel' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/kernel' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/kernel' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/kernel' Making install in simd-support make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/simd-support' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/simd-support' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/simd-support' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/simd-support' Making install in dft make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft' Making install in scalar make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar' Making install in codelets make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar/codelets' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar/codelets' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar/codelets' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar/codelets' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar/codelets' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar/codelets' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar' make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/scalar' Making install in simd make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd' Making install in common make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/common' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/common' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/common' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/common' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/common' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/common' Making install in sse2 make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/sse2' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/sse2' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/sse2' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/sse2' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/sse2' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/sse2' Making install in avx make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/avx' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/avx' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/avx' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/avx' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/avx' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/avx' Making install in altivec make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/altivec' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/altivec' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/altivec' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/altivec' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/altivec' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd/altivec' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd' make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft/simd' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/dft' Making install in rdft make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' Making install in scalar make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' Making install in r2cf make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cf' Making install in r2cb make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2cb' Making install in r2r make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar/r2r' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/scalar' Making install in simd make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' Making install in common make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/common' Making install in sse2 make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/sse2' Making install in avx make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/avx' Making install in altivec make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make  install-am make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make[7]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd/altivec' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' make[6]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft/simd' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/rdft' Making install in reodft make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/reodft' Making install in api make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' make  install-am make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' make[5]: Nothing to be done for 'install-exec-am'. test -z "/mnt/c/Users/Alen/Documents/Research/amber18/include" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18/include"  /usr/bin/install -c -m 644 fftw3.h fftw3.f '/mnt/c/Users/Alen/Documents/Research/amber18/include' test -z "/mnt/c/Users/Alen/Documents/Research/amber18/include" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18/include"  /usr/bin/install -c -m 644 fftw3.f03 '/mnt/c/Users/Alen/Documents/Research/amber18/include' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/api' Making install in threads make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/threads' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/threads' test -z "/mnt/c/Users/Alen/Documents/Research/amber18//lib" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18//lib" make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/threads' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/threads' Making install in libbench2 make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/libbench2' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/libbench2' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/libbench2' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/libbench2' Making install in . make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' test -z "/mnt/c/Users/Alen/Documents/Research/amber18//lib" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18//lib"  /bin/bash ./libtool   --mode=install /usr/bin/install -c   libfftw3.la '/mnt/c/Users/Alen/Documents/Research/amber18//lib' libtool: install: /usr/bin/install -c .libs/libfftw3.lai /mnt/c/Users/Alen/Documents/Research/amber18//lib/libfftw3.la libtool: install: /usr/bin/install -c .libs/libfftw3.a /mnt/c/Users/Alen/Documents/Research/amber18//lib/libfftw3.a libtool: install: chmod 644 /mnt/c/Users/Alen/Documents/Research/amber18//lib/libfftw3.a libtool: install: ranlib /mnt/c/Users/Alen/Documents/Research/amber18//lib/libfftw3.a libtool: finish: PATH="/mnt/c/Users/Alen/Documents/Research/amber18//bin:/home/alen/bin:/home/alen/.local/bin:/home/alen/miniconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Windows/system32:/mnt/c/Windows:/mnt/c/Windows/System32/Wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0/:/mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/Program Files (x86)/Skype/Phone/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/Users/Alen/AppData/Local/Microsoft/WindowsApps:/snap/bin:/sbin" ldconfig -n /mnt/c/Users/Alen/Documents/Research/amber18//lib ---------------------------------------------------------------------- Libraries have been installed in:    /mnt/c/Users/Alen/Documents/Research/amber18//lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following:    - add LIBDIR to the `LD_LIBRARY_PATH' environment variable      during execution    - add LIBDIR to the `LD_RUN_PATH' environment variable      during linking    - use the `-Wl,-rpath -Wl,LIBDIR' linker flag    - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/mnt/c/Users/Alen/Documents/Research/amber18//lib/pkgconfig" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18//lib/pkgconfig"  /usr/bin/install -c -m 644 fftw3.pc '/mnt/c/Users/Alen/Documents/Research/amber18//lib/pkgconfig' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' Making install in tests make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tests' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tests' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tests' Making install in mpi make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' make  install-am make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' test -z "/mnt/c/Users/Alen/Documents/Research/amber18//lib" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18//lib" test -z "/mnt/c/Users/Alen/Documents/Research/amber18/include" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18/include" test -z "/mnt/c/Users/Alen/Documents/Research/amber18/include" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18/include" make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/mpi' Making install in doc make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' Making install in FAQ make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc/FAQ' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc/FAQ' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc/FAQ' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc/FAQ' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' make[5]: Nothing to be done for 'install-exec-am'. test -z "/mnt/c/Users/Alen/Documents/Research/amber18/share/info" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18/share/info"  /usr/bin/install -c -m 644 ./fftw3.info ./fftw3.info-1 ./fftw3.info-2 '/mnt/c/Users/Alen/Documents/Research/amber18/share/info'  install-info --info-dir='/mnt/c/Users/Alen/Documents/Research/amber18/share/info' '/mnt/c/Users/Alen/Documents/Research/amber18/share/info/fftw3.info' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/doc' Making install in tools make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' make  install-am make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' test -z "/mnt/c/Users/Alen/Documents/Research/amber18/bin" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18/bin"   /bin/bash ../libtool   --mode=install /usr/bin/install -c fftw-wisdom '/mnt/c/Users/Alen/Documents/Research/amber18/bin' libtool: install: /usr/bin/install -c fftw-wisdom /mnt/c/Users/Alen/Documents/Research/amber18/bin/fftw-wisdom test -z "/mnt/c/Users/Alen/Documents/Research/amber18/bin" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18/bin"  /usr/bin/install -c fftw-wisdom-to-conf '/mnt/c/Users/Alen/Documents/Research/amber18/bin' test -z "/mnt/c/Users/Alen/Documents/Research/amber18/share/man/man1" || /bin/mkdir -p "/mnt/c/Users/Alen/Documents/Research/amber18/share/man/man1"  /usr/bin/install -c -m 644 fftw-wisdom-to-conf.1 fftw-wisdom.1 '/mnt/c/Users/Alen/Documents/Research/amber18/share/man/man1' make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/tools' Making install in m4 make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/m4' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/m4' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/m4' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3/m4' make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/fftw-3.3' Starting installation of AmberTools19 serial at Wed Oct 16 17:56:54 EDT 2019. (cd ucpp-1.3 && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/ucpp-1.3' [UCPP]  CC mem.c [UCPP]  CC nhash.c [UCPP]  CC cpp.c [UCPP]  CC lexer.c [UCPP]  CC assert.c [UCPP]  CC macro.c [UCPP]  CC eval.c [UCPP]  CC ucpp mv ucpp /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/ucpp-1.3' (cd arpack && make install ); make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' [ARPACK]  FC ivout.f [ARPACK]  FC dvout.f [ARPACK]  FC dgetv0.f [ARPACK]  FC dlaqrb.f [ARPACK]  FC dnaitr.f [ARPACK]  FC dnapps.f [ARPACK]  FC dnaup2.f [ARPACK]  FC dnaupd.f [ARPACK]  FC dnconv.f [ARPACK]  FC dneigh.f [ARPACK]  FC dmout.f [ARPACK]  FC dneupd.f [ARPACK]  FC dngets.f [ARPACK]  FC dsaitr.f [ARPACK]  FC dsapps.f [ARPACK]  FC dsaup2.f [ARPACK]  FC dsaupd.f [ARPACK]  FC dsconv.f [ARPACK]  FC dseigt.f [ARPACK]  FC dsesrt.f [ARPACK]  FC dseupd.f [ARPACK]  FC dsgets.f [ARPACK]  FC dsortc.f [ARPACK]  FC dsortr.f [ARPACK]  FC dstatn.f [ARPACK]  FC dstats.f [ARPACK]  FC dstqrb.f [ARPACK]  FC dsarpack.f dsarpack.f:424.3:  12         go to 11    1 dsarpack.f:199.15:       go to (12,18) label                2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) dsarpack.f:545.3:  18            go to 17    1 dsarpack.f:199.18:       go to (12,18) label                   2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) [ARPACK]  CC wallclock.c [ARPACK]  CC /mnt/c/Users/Alen/Documents/Research/amber18//lib/libarpack.a ar: creating libarpack.a make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' (cd lapack && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' [LAPACK]  FC dsyev.f [LAPACK]  FC dsygv.f [LAPACK]  FC dlansy.f [LAPACK]  FC dsytrd.f [LAPACK]  FC dorgtr.f [LAPACK]  FC dsteqr.f [LAPACK]  FC dsterf.f [LAPACK]  FC dlascl.f [LAPACK]  FC dlamch.f [LAPACK]  FC ilaenv.f [LAPACK]  FC dlassq.f [LAPACK]  FC dsytd2.f [LAPACK]  FC dlatrd.f [LAPACK]  FC dorgql.f [LAPACK]  FC dorgqr.f [LAPACK]  FC dlasrt.f [LAPACK]  FC dlaset.f [LAPACK]  FC dlanst.f [LAPACK]  FC dlaev2.f [LAPACK]  FC dlasr.f [LAPACK]  FC dlapy2.f [LAPACK]  FC dlartg.f [LAPACK]  FC dlae2.f [LAPACK]  FC dorg2r.f [LAPACK]  FC dlarft.f [LAPACK]  FC dlarfb.f [LAPACK]  FC dorg2l.f [LAPACK]  FC dlarfg.f [LAPACK]  FC dlarf.f [LAPACK]  FC dspev.f [LAPACK]  FC dlansp.f [LAPACK]  FC dsptrd.f [LAPACK]  FC dopgtr.f [LAPACK]  FC dppsv.f [LAPACK]  FC dspsv.f [LAPACK]  FC dgeev.f [LAPACK]  FC dsptrs.f [LAPACK]  FC dsptrf.f [LAPACK]  FC dpptrs.f [LAPACK]  FC dpptrf.f [LAPACK]  FC dgebak.f [LAPACK]  FC dtrevc.f [LAPACK]  FC dlacpy.f [LAPACK]  FC dhseqr.f [LAPACK]  FC dorghr.f [LAPACK]  FC dgehrd.f [LAPACK]  FC dgebal.f [LAPACK]  FC dlange.f [LAPACK]  FC dlabad.f [LAPACK]  FC dlahqr.f [LAPACK]  FC dlarfx.f [LAPACK]  FC dlanhs.f [LAPACK]  FC dlaln2.f [LAPACK]  FC dgehd2.f [LAPACK]  FC dlahrd.f [LAPACK]  FC dlanv2.f [LAPACK]  FC dladiv.f [LAPACK]  FC dgerq2.f [LAPACK]  FC dorm2r.f [LAPACK]  FC dlarnv.f [LAPACK]  FC dgeqr2.f [LAPACK]  FC dlaruv.f [LAPACK]  FC dspevd.f [LAPACK]  FC dstedc.f [LAPACK]  FC dopmtr.f [LAPACK]  FC dlaed0.f [LAPACK]  FC dlaed1.f [LAPACK]  FC dlaed7.f [LAPACK]  FC dlaeda.f [LAPACK]  FC dlaed8.f [LAPACK]  FC dlaed9.f [LAPACK]  FC dlamrg.f [LAPACK]  FC dlaed2.f [LAPACK]  FC dlaed3.f [LAPACK]  FC dpotrs.f [LAPACK]  FC dpotrf.f [LAPACK]  FC dsygst.f [LAPACK]  FC dpotf2.f [LAPACK]  FC dsygs2.f [LAPACK]  FC dposv.f [LAPACK]  FC dlaebz.f [LAPACK]  FC dlagtf.f [LAPACK]  FC dlagts.f [LAPACK]  FC dormqr.f [LAPACK]  FC dormql.f [LAPACK]  FC dorm2l.f [LAPACK]  FC dlaed4.f [LAPACK]  FC dlaed5.f [LAPACK]  FC dlaed6.f [LAPACK]  FC ieeeck.f [LAPACK]  FC dsyevx.f [LAPACK]  FC dsyevd.f [LAPACK]  FC dstebz.f [LAPACK]  FC dstein.f [LAPACK]  FC dormtr.f [LAPACK]  FC zheev.f [LAPACK]  FC lsame.f [LAPACK]  FC zlanhe.f [LAPACK]  FC zlascl.f [LAPACK]  FC zhetrd.f [LAPACK]  FC zungtr.f [LAPACK]  FC zsteqr.f [LAPACK]  FC zlassq.f [LAPACK]  FC zlatrd.f [LAPACK]  FC zhetd2.f [LAPACK]  FC zungql.f [LAPACK]  FC zungqr.f [LAPACK]  FC zlasr.f [LAPACK]  FC zlaset.f [LAPACK]  FC zlacgv.f [LAPACK]  FC zlarfg.f [LAPACK]  FC zung2l.f [LAPACK]  FC zlarft.f [LAPACK]  FC zlarfb.f [LAPACK]  FC zung2r.f [LAPACK]  FC dlapy3.f [LAPACK]  FC zladiv.f [LAPACK]  FC zlarf.f [LAPACK]  FC dgesvd.f [LAPACK]  FC dgebrd.f [LAPACK]  FC dgebd2.f [LAPACK]  FC dlabrd.f [LAPACK]  FC dorgbr.f [LAPACK]  FC dbdsqr.f [LAPACK]  FC dgeqrf.f [LAPACK]  FC dormbr.f [LAPACK]  FC dgelqf.f [LAPACK]  FC dorglq.f [LAPACK]  FC dlas2.f [LAPACK]  FC dlasq1.f [LAPACK]  FC dlasv2.f [LAPACK]  FC dgelq2.f [LAPACK]  FC dorgl2.f [LAPACK]  FC dlasq2.f [LAPACK]  FC dormlq.f [LAPACK]  FC dlasq3.f [LAPACK]  FC dlasq4.f [LAPACK]  FC dlasq5.f [LAPACK]  FC dorml2.f [LAPACK]  FC dlasq6.f [LAPACK]  FC dgesv.f [LAPACK]  FC dgetrs.f [LAPACK]  FC dlaswp.f [LAPACK]  FC dgetrf.f [LAPACK]  FC dgerfs.f [LAPACK]  FC dgetf2.f [LAPACK]  FC dsysv.f [LAPACK]  FC dsytrs.f [LAPACK]  FC dsytrf.f [LAPACK]  FC dlasyf.f [LAPACK]  FC dsytf2.f [LAPACK]  FC dgelss.f [LAPACK]  FC dgelsd.f [LAPACK]  FC dlalsd.f [LAPACK]  FC dlasdq.f [LAPACK]  FC dlasda.f [LAPACK]  FC dlalsa.f [LAPACK]  FC dlasd6.f [LAPACK]  FC dlals0.f [LAPACK]  FC dlasdt.f [LAPACK]  FC dlasd7.f [LAPACK]  FC dlasd8.f [LAPACK]  FC dlasd4.f [LAPACK]  FC dlasd5.f [LAPACK]  FC dlacn2.f [LAPACK]  FC dgelsy.f [LAPACK]  FC dlaic1.f [LAPACK]  FC dtzrzf.f [LAPACK]  FC dormrz.f [LAPACK]  FC dlarzt.f [LAPACK]  FC dlarzb.f [LAPACK]  FC dlatrz.f [LAPACK]  FC dormr3.f [LAPACK]  FC dgeqp3.f [LAPACK]  FC dlarz.f [LAPACK]  FC dlaqps.f [LAPACK]  FC dlaqp2.f [LAPACK]  FC dspevx.f [LAPACK]  FC dsyevr.f [LAPACK]  FC dstegr.f [LAPACK]  FC dlarrv.f [LAPACK]  FC dlarre.f [LAPACK]  FC dlarrb.f [LAPACK]  FC dlar1v.f [LAPACK]  FC dlarrf.f [LAPACK]  FC dggev.f [LAPACK]  FC dhgeqz.f [LAPACK]  FC dgghrd.f [LAPACK]  FC dtgevc.f [LAPACK]  FC dggbak.f [LAPACK]  FC dggbal.f [LAPACK]  FC dlag2.f [LAPACK]  FC disnan.f [LAPACK]  FC dlaisnan.f [LAPACK]  FC dlarfp.f [LAPACK]  FC dstemr.f [LAPACK]  FC dlarra.f [LAPACK]  FC dlarrc.f [LAPACK]  FC dlarrd.f [LAPACK]  FC dlarrj.f [LAPACK]  FC dlarrk.f [LAPACK]  FC dlarrr.f [LAPACK]  FC dlaneg.f [LAPACK]  FC dlaqr0.f [LAPACK]  FC dlaqr1.f [LAPACK]  FC dlaqr2.f [LAPACK]  FC dlaqr3.f [LAPACK]  FC dlaqr4.f [LAPACK]  FC dlaqr5.f [LAPACK]  FC dlahr2.f [LAPACK]  FC dormhr.f [LAPACK]  FC dtrexc.f [LAPACK]  FC dlaexc.f [LAPACK]  FC dlasy2.f [LAPACK]  FC iparmq.f [LAPACK]  FC iladlc.f [LAPACK]  FC iladlr.f [LAPACK]  FC dlatrs.f [LAPACK]  FC drscl.f [LAPACK]  FC dlantr.f [LAPACK]  FC dgecon.f [LAPACK]  FC dgeequ.f [LAPACK]  FC dlaqge.f [LAPACK]  FC dgesvx.f [LAPACK]  FC chla_transtype.f [LAPACK]  FC dla_wwaddw.f [LAPACK]  FC dla_geamv.f [LAPACK]  FC dla_lin_berr.f [LAPACK]  FC ilatrans.f [LAPACK]  FC dla_gercond.f [LAPACK]  FC ilaprec.f [LAPACK]  FC dla_gerfsx_extended.f [LAPACK]  FC dla_rpvgrw.f [LAPACK]  FC dgerfsx.f [LAPACK]  FC dlascl2.f [LAPACK]  FC dgeequb.f [LAPACK]  AR /mnt/c/Users/Alen/Documents/Research/amber18//lib/liblapack.a ar: creating liblapack.a make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' (cd blas && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' [BLAS]  FC dasum.f [BLAS]  FC daxpy.f [BLAS]  FC dcabs1.f [BLAS]  FC dcopy.f [BLAS]  FC ddot.f [BLAS]  FC dgbmv.f [BLAS]  FC dgemm.f [BLAS]  FC dgemv.f [BLAS]  FC dger.f [BLAS]  FC dnrm2.f [BLAS]  FC drot.f [BLAS]  FC drotg.f [BLAS]  FC dsbmv.f [BLAS]  FC dscal.f [BLAS]  FC dspmv.f [BLAS]  FC dspr.f [BLAS]  FC dspr2.f [BLAS]  FC dswap.f [BLAS]  FC dsymm.f [BLAS]  FC dsymv.f [BLAS]  FC dsyr.f [BLAS]  FC dsyr2.f [BLAS]  FC dsyr2k.f [BLAS]  FC dsyrk.f [BLAS]  FC dtbmv.f [BLAS]  FC dtbsv.f [BLAS]  FC dtpmv.f [BLAS]  FC dtpsv.f [BLAS]  FC dtrmm.f [BLAS]  FC dtrmv.f [BLAS]  FC dtrsm.f [BLAS]  FC dtrsv.f [BLAS]  FC dummy.f [BLAS]  FC dzasum.f [BLAS]  FC dznrm2.f [BLAS]  FC idamax.f [BLAS]  FC isamax.f [BLAS]  FC lsame.f [BLAS]  FC xerbla.f [BLAS]  FC scopy.f [BLAS]  FC sswap.f [BLAS]  FC sscal.f [BLAS]  FC sasum.f [BLAS]  FC snrm2.f [BLAS]  FC sdot.f [BLAS]  FC ssyr2k.f [BLAS]  FC saxpy.f [BLAS]  FC sgemv.f [BLAS]  FC ssyr2.f [BLAS]  FC ssymv.f [BLAS]  FC sgemm.f [BLAS]  FC strmm.f [BLAS]  FC strmv.f [BLAS]  FC sger.f [BLAS]  FC zher2k.f [BLAS]  FC zswap.f [BLAS]  FC zgemv.f [BLAS]  FC zhemv.f [BLAS]  FC zscal.f [BLAS]  FC zdotc.f [BLAS]  FC zaxpy.f [BLAS]  FC zher2.f [BLAS]  FC zdscal.f [BLAS]  FC ztrmv.f [BLAS]  FC zcopy.f [BLAS]  FC ztrmm.f [BLAS]  FC zgemm.f [BLAS]  FC zgerc.f [BLAS]  AR /mnt/c/Users/Alen/Documents/Research/amber18//lib/libblas.a ar: creating libblas.a make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' (cd c9x-complex && make skip ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/c9x-complex' using built-in (C99) complex.h functionality make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/c9x-complex' (cd pbsa && make -j1 install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/pbsa' [PBSA]  FC dsvdc.F90 [PBSA]  FC timer.F90 [PBSA]  FC memory_module.F90 [PBSA]  FC decomp.F90 [PBSA]  FC parms.F90 [PBSA]  FC pbsa.F90 [PBSA]  FC sa_driver.F90 [PBSA]  FC  ../lib/random.F90 [PBSA]  FC pb_force.F90 [PBSA]  FC np_force.F90 [PBSA]  FC pb_read.F90 [PBSA]  FC pb_write.F90 [PBSA]  FC getcoor.F90 [PBSA]  FC runmd.F90 [PBSA]  FC runmin.F90 [PBSA]  FC egb.F90 [PBSA]  FC force.F90 [PBSA]  FC pbsa_lib.F90 [PBSA]  FC pb_init.F90 [PBSA]  FC density.F90 [PBSA]  FC pb_iimdrv.F90 [PBSA]  FC pb_p3m.F90 [PBSA]  FC pb_anaiim.F90 [PBSA]  FC pb_nhadrv.F90 [PBSA]  FC pb_augdrv.F90 [PBSA]  FC pb_fdfrc.F90 [PBSA]  FC pb_crgview.F90 Always rebuild [ pb_lsolver.o pb_fddrv.o [ cuda_pb.o kLinearSolvers.o cuda_LinearSolvers.o cusparse_LinearSolvers.o cusp_LinearSolvers.o ]] to make predefined macros effective [PBSA]  FC pb_lsolver.F90 [PBSA]  FC pb_nlsolver.F90 [PBSA]  FC pb_fddrv.F90 [PBSA]  FC pb_bldsys.F90 [PBSA]  FC pb_mpfrc.F90 [PBSA]  FC pb_direct.F90 [PBSA]  FC pb_list.F90 [PBSA]  FC ene.F90 [PBSA]  FC locmem.F90 [PBSA]  FC myopen.F90 [PBSA]  FC rdparm.F90 [PBSA]  FC rgroup.F90 [PBSA]  FC rfree.F90 [PBSA]  FC debug.F90 [PBSA]  FC irre31.F90 [PBSA]  FC irre32.F90 [PBSA]  FC phidev.F90 [PBSA]  FC project.F90 [PBSA]  FC qld.F90 [PBSA]  FC miniop.F90 [PBSA]  FC transf.F90 [PBSA]  FC curv.F90 [PBSA]  FC GrToPr.F90 [PBSA]  FC jumps.F90 [PBSA]  FC regular.F90 [PBSA]  FC bicg.F90 [PBSA]  FC gmres.F90 [PBSA]  FC daxpy.F90 [PBSA]  FC ddot.F90 [PBSA]  FC dheqr.F90 [PBSA]  FC dpigmr.F90 [PBSA]  FC dxlcal.F90 [PBSA]  FC dchkw.F90 [PBSA]  FC dgmres.F90 [PBSA]  FC dnrm2.F90 dnrm2.F90:88:23:     10 ASSIGN 30 TO NEXT                        1 Warning: Deleted feature: ASSIGN statement at (1) dnrm2.F90:95:19:     20    GO TO NEXT,(30, 50, 70, 110)                    1 Warning: Deleted feature: Assigned GOTO statement at (1) dnrm2.F90:97:23:        ASSIGN 50 TO NEXT                        1 Warning: Deleted feature: ASSIGN statement at (1) dnrm2.F90:107:23:        ASSIGN 70 TO NEXT                        1 Warning: Deleted feature: ASSIGN statement at (1) dnrm2.F90:113:24:        ASSIGN 110 TO NEXT                         1 Warning: Deleted feature: ASSIGN statement at (1) [PBSA]  FC drlcal.F90 [PBSA]  FC isdgmr.F90 [PBSA]  FC dcopy.F90 [PBSA]  FC dhels.F90 [PBSA]  FC dorth.F90 [PBSA]  FC ds2y.F90 [PBSA]  FC dscal.F90 [PBSA]  FC dsilus.F90 [PBSA]  FC dslugm.F90 [PBSA]  FC dslui.F90 [PBSA]  FC dslui2.F90 [PBSA]  FC dsmv.F90 [PBSA]  FC qs2i1d.F90 [PBSA]  FC d1mach.F90 [PBSA]  FC fdump.F90 [PBSA]  FC i1mach.F90 [PBSA]  FC j4save.F90 [PBSA]  FC xercnt.F90 [PBSA]  FC xerhlt.F90 [PBSA]  FC xermsg.F90 [PBSA]  FC xerprn.F90 [PBSA]  FC xersve.F90 [PBSA]  FC xgetua.F90 [PBSA]  FC pb_chkfrc.F90 [PBSA]  FC svdcmp.F90 [PBSA]  FC svbksb.F90 [PBSA]  FC pythag.F90 [PBSA]  FC interpX.F90 [PBSA]  FC gen_dx_file.F90 [PBSA]  FC rdpqr.F90 cd ../lib && make nxtsec.o random.o make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' [LIB]  FC nxtsec.F [LIB]  FC random.F90 make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' cd ../lapack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' cd ../blas && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' cd ../arpack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' [PBSA]  FC pbsa /bin/mv pbsa /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/pbsa' (cd gbnsr6 && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/gbnsr6' [GBNSR6]  FC memory_module.F90 [GBNSR6]  FC timer.F90 [GBNSR6]  FC decomp.F90 [GBNSR6]  FC gbnsr6.F90 [GBNSR6]  FC variable_module.F90 [GBNSR6]  FC sa_driver.F90 [GBNSR6]  FC np_force.F90 [GBNSR6]  FC pb_read.F90 [GBNSR6]  FC egb.F90 [GBNSR6]  FC gb_read.F90 [GBNSR6]  FC pb_write.F90 [GBNSR6]  FC getcoor.F90 [GBNSR6]  FC runmd.F90 [GBNSR6]  FC runmin.F90 [GBNSR6]  FC force.F90 [GBNSR6]  FC pb_init.F90 [GBNSR6]  FC pb_exmol.F90 [GBNSR6]  FC NSR6routines.F90 [GBNSR6]  FC pb_list.F90 [GBNSR6]  FC ene.F90 [GBNSR6]  FC locmem.F90 [GBNSR6]  FC myopen.F90 [GBNSR6]  FC rdparm.F90 [GBNSR6]  FC rgroup.F90 [GBNSR6]  FC rfree.F90 [GBNSR6]  FC debug.F90 [GBNSR6]  FC svdcmp.F90 [GBNSR6]  FC svbksb.F90 [GBNSR6]  FC parms.F90 [GBNSR6]  FC pythag.F90 [GBNSR6]  FC gen_dx_file.F90 cd ../lib && make nxtsec.o random.o make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' make[3]: 'nxtsec.o' is up to date. make[3]: 'random.o' is up to date. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' cd ../lapack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' cd ../blas && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' cd ../arpack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' [GBNSR6]  FC gbnsr6 /bin/mv gbnsr6 /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/gbnsr6' (cd cifparse && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cifparse' [CIFPARSE]  FLEX cifparse.l [CIFPARSE]  BISON cifparse.y cifparse.y:1.1-13: warning: deprecated directive, use ‘%name-prefix’ [-Wdeprecated]  %name-prefix="cifp"  ^^^^^^^^^^^^^ cifparse.y:2.1-13: warning: deprecated directive, use ‘%file-prefix’ [-Wdeprecated]  %file-prefix="cifp"  ^^^^^^^^^^^^^ [CIFPARSE]  CC lex.cifp.c [CIFPARSE]  CC cifp.tab.c [CIFPARSE]  CC cifparse.c cifparse.c: In function ‘ndb_cif_print_item_value’: cifparse.c:261:19: warning: format ‘%c’ expects argument of type ‘int’, but argument 3 has type ‘char *’ [-Wformat=]        fprintf(fp, "\n%c  ", null_char);                    ^ cifparse.c: In function ‘ndb_cif_print_formatted_item_value’: cifparse.c:492:21: warning: embedded ‘\0’ in format [-Wformat-contains-nul]   sprintf(tmpstring, " %s\0", value);                      ^ cifparse.c:498:21: warning: embedded ‘\0’ in format [-Wformat-contains-nul]   sprintf(tmpstring, " \'%s\'\0", value);                      ^ cifparse.c:500:21: warning: embedded ‘\0’ in format [-Wformat-contains-nul]   sprintf(tmpstring, "\'%s\'\0", value);                      ^ [CIFPARSE]  AR /mnt/c/Users/Alen/Documents/Research/amber18//lib/libcifparse.a ar: creating /mnt/c/Users/Alen/Documents/Research/amber18//lib/libcifparse.a make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cifparse' (cd antechamber && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/antechamber' [ANTECHAMBER]  CC am1bcc.c [ANTECHAMBER]  CC eprintf.c [ANTECHAMBER]  CC am1bcc [ANTECHAMBER]  CC antechamber.c [ANTECHAMBER]  CC antechamber [ANTECHAMBER]  CC atomtype.c [ANTECHAMBER]  CC atomtype [ANTECHAMBER]  CC bondtype.c [ANTECHAMBER]  CC ncsu-penalties.c [ANTECHAMBER]  CC bondtype [ANTECHAMBER]  CC espgen.c [ANTECHAMBER]  CC espgen [ANTECHAMBER]  CC parmchk2.c [ANTECHAMBER]  CC parmchk2 [ANTECHAMBER]  CC prepgen.c [ANTECHAMBER]  CC prepgen [ANTECHAMBER]  CC residuegen.c [ANTECHAMBER]  CC residuegen [ANTECHAMBER]  CC respgen.c [ANTECHAMBER]  CC respgen SFX= BINDIR=/mnt/c/Users/Alen/Documents/Research/amber18//bin sh patch.sh make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/antechamber' (cd sqm && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sqm' [SQM]  FC file_io_dat.F90 [SQM]  FC ../lib/constants.F90 [SQM]  FC findmask.F90 [SQM]  FC utilitiesModule.F90 [SQM]  FC qmmm_qmtheorymodule.F90 [SQM]  FC qmmm_nml_module.F90 [SQM]  FC elementOrbitalIndex.F90 [SQM]  FC qmmm_struct_module.F90 [SQM]  FC qmmm_vsolv_module.F90 [SQM]  FC qm2_params_module.F90 [SQM]  FC qmmm_module.F90 [SQM]  FC parameterReader.F90 [SQM]  FC qm2_read_nm_and_alloc.F90 [SQM]  FC qm2_dftb_module.F90 [SQM]  FC qm2_pm6_hof_module.F90 [SQM]  FC sqm.F90 [SQM]  FC xmin.F90 [SQM]  CC ../sff/xminC.c [SQM]  FC amopen.F90 [SQM]  FC mexit.F90 [SQM]  FC assert.F90 [SQM]  FC timer_dummy.F90 [SQM]  FC nmlsrc.F90 [SQM]  FC dh_correction_module.F90 [SQM]  FC qm2_parameters.F90 [SQM]  FC qm_print_info.F90 [SQM]  FC qm2_energy.F90 qm2_energy.F90:22:7:     use qmmm_module, only : qmmm_nml,qmmm_struct, qm2_struct, qm2_params, &        1 Warning: Unused module variable ‘qmmm_scratch’ which has been explicitly imported at (1) [-Wunused-variable] [SQM]  FC qm2_iterator_mod.F90 [SQM]  FC slater_overlap.F90 [SQM]  FC MNDOChargeSeparation.F90 [SQM]  FC qm2_fock_d.F90 [SQM]  FC opnq_Erep.F90 [SQM]  FC opnq_Edisp.F90 [SQM]  FC opnq_Evdw.F90 [SQM]  FC opnq_SwitchMod.F90 [SQM]  FC opnq.F90 [SQM]  FC qm2_scf.F90 qm2_scf.F90:244:0:           old_fock_matrix = fock_matrix  ^ Warning: ‘old_fock_matrix.dim[0].ubound’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SQM]  FC qm2_dftb_scf.F90 [SQM]  FC qm2_allocate_e_repul.F90 [SQM]  FC qm2_calc_charges.F90 [SQM]  FC qm2_calc_dipole.F90 [SQM]  FC qm2_calc_rij_and_eqns.F90 [SQM]  FC qm2_dihed.F90 [SQM]  FC qm2_fock.F90 [SQM]  FC rotation.F90 [SQM]  FC qm2_get_qm_forces.F90 [SQM]  FC qm2_get_qmmm_forces.F90 [SQM]  FC qm2_h1elec.F90 [SQM]  FC qm2_hcore_qmqm.F90 [SQM]  FC qm2_hcore_qmmm.F90 [SQM]  FC qm2_identify_peptide_links.F90 [SQM]  FC qm2_diagonalizer_module.F90 [SQM]  FC qm2_load_params_and_allocate.F90 [SQM]  FC qm2_repp.F90 [SQM]  FC qm2_rotate_qmqm.F90 [SQM]  FC qm2_core_core_repulsion.F90 [SQM]  FC qm2_core_core_repulsion_dxyz.F90 [SQM]  FC qm2_setup_orb_exp.F90 [SQM]  FC qm2_smallest_number.F90 [SQM]  FC qm2_fock_predict.F90 [SQM]  FC qm_gb.F90 [SQM]  FC qm_zero_charges.F90 [SQM]  FC qm_assign_atom_types.F90 [SQM]  FC qm_link_atoms.F90 [SQM]  FC qm2_print_charges.F90 [SQM]  FC qm2_print_bondorders.F90 [SQM]  FC qm2_dftb_broyden.F90 [SQM]  FC qm2_dftb_dispersion_egr.F90 [SQM]  FC qm2_dftb_dispersion_params.F90 [SQM]  FC qm2_dftb_dispersionread.F90 [SQM]  FC qm2_dftb_energy.F90 [SQM]  FC qm2_dftb_ewevge.F90 [SQM]  FC qm2_dftb_externalshift.F90 [SQM]  FC qm2_dftb_fermi.F90 [SQM]  FC qm2_dftb_get_qm_forces.F90 [SQM]  FC qm2_dftb_gamma.F90 [SQM]  FC qm2_dftb_gammamat.F90 [SQM]  FC qm2_dftb_get_qmmm_forces.F90 [SQM]  FC qm2_dftb_gettab.F90 [SQM]  FC qm2_dftb_load_params.F90 [SQM]  FC qm2_dftb_mulliken.F90 [SQM]  FC qm2_dftb_repulsiv.F90 [SQM]  FC qm2_dftb_self.F90 [SQM]  FC qm2_dftb_shift.F90 [SQM]  FC qm2_dftb_skpar.F90 [SQM]  FC qm2_dftb_slkode.F90 [SQM]  FC qm2_dftb_slktrafo.F90 [SQM]  FC qm2_dftb_read_cm3.F90 [SQM]  FC qm2_dftb_cm3.F90 [SQM]  FC qm2_dftb_gb.F90 [SQM]  FC qm2_dftb_3rd_order.F90 [SQM]  FC qm2_h1elec_d.F90 [SQM]  FC qm2_repp_d.F90 [SQM]  FC qm2_print_energy.F90 [SQM]  FC qm2_dftb_get_dftb3_parameters.F90 [SQM]  FC qm2_dftb_gamma_dftb3.F90 cd ../lapack; make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' cd ../blas; make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' cd ../arpack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' cd ../lib; make sys.a make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' [LIB]  FC sys.F [LIB]  CC wallclock.c [LIB]  FC veclib.F90 [LIB]  AR sys.a ar: creating sys.a make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' [SQM]  FC sqm mv sqm /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sqm' (cd reduce && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/reduce' installing ./toolclasses... make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/reduce/toolclasses' [REDUCE]  CXX UseCount.cpp [REDUCE]  CXX Point3d.cpp [REDUCE]  CXX Stringclass.cpp [REDUCE]  CXX Hash.cpp [REDUCE]  CXX utility.cpp [REDUCE]  CXX column_sprintf.cpp [REDUCE]  CXX column_sscanf.cpp [REDUCE]  CXX DisjointSets.cpp Loading libtoolclasses.a ... ar: `u' modifier ignored since `D' is the default (see `U') done make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/reduce/toolclasses' installing ./libpdb... make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/reduce/libpdb' [REDUCE]  CXX pdb_read.cpp [REDUCE]  CXX pdb_sprntf.cpp [REDUCE]  CXX pdb_sscanf.cpp [REDUCE]  CXX pdb_chars.cpp [REDUCE]  CXX pdb_type.cpp [REDUCE]  CXX pdb++.cpp [REDUCE]  CXX pdbinput.cpp Loading libpdb++.a ... ar: `u' modifier ignored since `D' is the default (see `U') done make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/reduce/libpdb' installing ./reduce_src... make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/reduce/reduce_src' [REDUCE]  CXX GraphToHoldScores.cpp [REDUCE]  CXX reduce.cpp [REDUCE]  CXX CTab.cpp [REDUCE]  CXX ElementInfo.cpp [REDUCE]  CXX StdResH.cpp [REDUCE]  CXX ResBlk.cpp [REDUCE]  CXX AtomConn.cpp [REDUCE]  CXX AtomPositions.cpp [REDUCE]  CXX DotSph.cpp [REDUCE]  CXX Mover.cpp [REDUCE]  CXX RotMethyl.cpp [REDUCE]  CXX RotAromMethyl.cpp [REDUCE]  CXX RotDonor.cpp [REDUCE]  CXX FlipMemo.cpp [REDUCE]  CXX CliqueList.cpp [REDUCE]  CXX AtomDescr.cpp [REDUCE]  CXX PDBrec.cpp [REDUCE]  CXX MoveableNode.cpp [REDUCE]  CC hybrid_36_c.c [REDUCE]  CXX reduce mv reduce /mnt/c/Users/Alen/Documents/Research/amber18//bin/to_be_dispatched/ cat ../reduce_template | sed "s/REPLACE_ME/reduce/" > /mnt/c/Users/Alen/Documents/Research/amber18//bin/reduce chmod +x /mnt/c/Users/Alen/Documents/Research/amber18//bin/reduce /bin/rm -f /mnt/c/Users/Alen/Documents/Research/amber18//dat/reduce_wwPDB_het_dict.txt cp /mnt/c/Users/Alen/Documents/Research/amber18//AmberTools/src/reduce/reduce_wwPDB_het_dict.txt /mnt/c/Users/Alen/Documents/Research/amber18//dat/reduce_wwPDB_het_dict.txt make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/reduce/reduce_src' make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/reduce' (if [  = "yes" ]; then \         cd moft && make install;\ fi;\ ) /bin/sh: 1: [: =: unexpected operator (cd leap && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap' Compiling basic programs cd src/leap && make installteLeap make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/leap' [LEAP]  CC basics.c [LEAP]  CC sysdepend.c [LEAP]  CC stringExtra.c [LEAP]  CC varArray.c [LEAP]  CC getline.c [LEAP]  CC avl.c [LEAP]  CC pdb_format.c [LEAP]  CC pdb_read.c [LEAP]  CC pdb_sprntf.c [LEAP]  CC pdb_sscanf.c [LEAP]  CC pdb_write.c [LEAP]  CC vector.c [LEAP]  CC zMatrix.c [LEAP]  CC sort.c [LEAP]  CC bag.c [LEAP]  CC hash.c [LEAP]  CC dictionary.c [LEAP]  CC database.c [LEAP]  CC nVector.c [LEAP]  CC ring.c [LEAP]  CC matrix.c [LEAP]  CC fortran.c [LEAP]  CC displayer.c [LEAP]  CC assoc.c [LEAP]  CC atom.c [LEAP]  CC byteArray.c [LEAP]  CC collection.c [LEAP]  CC container.c [LEAP]  CC internal.c [LEAP]  CC list.c [LEAP]  CC loop.c [LEAP]  CC molecule.c [LEAP]  CC oDouble.c [LEAP]  CC oInteger.c [LEAP]  CC oString.c [LEAP]  CC objekt.c [LEAP]  CC parmSet.c [LEAP]  CC residue.c [LEAP]  CC unit.c [LEAP]  CC unitio.c unitio.c: In function ‘zUnitIOSaveAmberParmFormat’: unitio.c:5003:14: warning: embedded ‘\0’ in format [-Wformat-contains-nul]               "%%VERSION  VERSION_STAMP = V0001.000  DATE = %m/%d/%y  %H:%M:%S\0",               ^ [LEAP]  CC tripos.c [LEAP]  CC graphUtil.c [LEAP]  CC select.c [LEAP]  CC amber.c [LEAP]  CC build.c [LEAP]  CC elements.c [LEAP]  CC library.c [LEAP]  CC chirality.c [LEAP]  CC minimizer.c [LEAP]  CC model.c [LEAP]  CC parmLib.c [LEAP]  CC pdbFile.c [LEAP]  CC mol2File.c [LEAP]  CC mol3File.c [LEAP]  CC tools.c [LEAP]  CC variables.c bison -y parser.y parser.y: warning: 6 shift/reduce conflicts [-Wconflicts-sr] (The warning 'conflicts: 6 shift/reduce' is normal) [LEAP]  CC parser.c y.tab.c: In function ‘yyparse’: y.tab.c:1288:16: warning: implicit declaration of function ‘yylex’ [-Wimplicit-function-declaration] y.tab.c:1615:7: warning: implicit declaration of function ‘yyerror’ [-Wimplicit-function-declaration] [LEAP]  CC help.c [LEAP]  CC utilMakeHelp.c [LEAP]  CC utilMakeHelp ./utilMakeHelp helptext.text helptext.c [LEAP]  CC helptext.c [LEAP]  CC octree.c [LEAP]  CC commands.c [LEAP]  CC mathop.c [LEAP]  CC block.c [LEAP]  CC restraint.c [LEAP]  CC hybrid.c [LEAP]  CC tLeap.c [LEAP]  CC teLeap mv teLeap /mnt/c/Users/Alen/Documents/Research/amber18//bin make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/leap' Copying shell script cp tleap /mnt/c/Users/Alen/Documents/Research/amber18//bin/tleap chmod +x /mnt/c/Users/Alen/Documents/Research/amber18//bin/tleap make install_xleap make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap' cd src/Wc && make make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/Wc' [LEAP]  CC MapAg.c [LEAP]  CC WcActCB.c [LEAP]  CC WcConvert.c [LEAP]  CC WcCreate.c [LEAP]  CC WcInvoke.c [LEAP]  CC WcLateBind.c [LEAP]  CC WcLoadRes.c [LEAP]  CC WcName.c [LEAP]  CC WcReg.c [LEAP]  CC WcRegXt.c [LEAP]  CC WcSetValue.c [LEAP]  CC WcTemplate.c [LEAP]  CC WcWarn.c [LEAP]  CC WcNameWidget.c [LEAP]  AR libWcLeap.a ar: creating libWcLeap.a make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/Wc' cd src/Xmu && make make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/Xmu' [LEAP]  CC AllCmap.c [LEAP]  CC Atoms.c [LEAP]  CC ClientWin.c [LEAP]  CC Clip.c [LEAP]  CC CloseHook.c [LEAP]  CC CmapAlloc.c [LEAP]  CC CrCmap.c [LEAP]  CC CrPixFBit.c [LEAP]  CC CursorName.c [LEAP]  CC CvtCache.c [LEAP]  CC CvtStdSel.c [LEAP]  CC DefErrMsg.c [LEAP]  CC DelCmap.c [LEAP]  CC DisplayQue.c [LEAP]  CC Distinct.c [LEAP]  CC DrawLogo.c [LEAP]  CC DrRndRect.c [LEAP]  CC EditresCom.c [LEAP]  CC ExtAgent.c [LEAP]  CC FToCback.c [LEAP]  CC GetHost.c [LEAP]  CC GrayPixmap.c [LEAP]  CC Initer.c [LEAP]  CC LocBitmap.c [LEAP]  CC Lookup.c [LEAP]  CC LookupCmap.c [LEAP]  CC Lower.c [LEAP]  CC RdBitF.c [LEAP]  CC ScrOfWin.c [LEAP]  CC ShapeWidg.c [LEAP]  CC StdCmap.c [LEAP]  CC StrToBS.c [LEAP]  CC StrToBmap.c [LEAP]  CC StrToCurs.c [LEAP]  CC StrToGrav.c [LEAP]  CC StrToJust.c [LEAP]  CC StrToLong.c [LEAP]  CC StrToOrnt.c [LEAP]  CC StrToShap.c [LEAP]  CC StrToWidg.c [LEAP]  CC UpdMapHint.c [LEAP]  CC VisCmap.c [LEAP]  CC WidgetNode.c [LEAP]  CC Xct.c [LEAP]  AR libXmu.a ar: creating libXmu.a make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/Xmu' cd src/Xpm && make make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/Xpm' [LEAP]  CC data.c [LEAP]  CC create.c [LEAP]  CC misc.c [LEAP]  CC rgb.c [LEAP]  CC scan.c [LEAP]  CC parse.c [LEAP]  CC hashtable.c [LEAP]  CC XpmCrBufFrI.c [LEAP]  CC XpmCrDataFrP.c [LEAP]  CC XpmCrPFrBuf.c [LEAP]  CC XpmRdFToI.c [LEAP]  CC XpmWrFFrI.c [LEAP]  CC XpmCrBufFrP.c [LEAP]  CC XpmCrIFrBuf.c [LEAP]  CC XpmCrPFrData.c [LEAP]  CC XpmRdFToP.c [LEAP]  CC XpmWrFFrP.c [LEAP]  CC XpmCrDataFrI.c [LEAP]  CC XpmCrIFrData.c [LEAP]  CC XpmRdFToData.c [LEAP]  CC XpmWrFFrData.c [LEAP]  AR libXpm.a ar: creating libXpm.a make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/Xpm' cd src/Xraw && make make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/Xraw' [LEAP]  CC 3d.c [LEAP]  CC AllWidgets.c [LEAP]  CC Arrow.c [LEAP]  CC AsciiSink.c [LEAP]  CC AsciiSrc.c [LEAP]  CC AsciiText.c [LEAP]  CC Box.c [LEAP]  CC Clock.c [LEAP]  CC Command.c [LEAP]  CC color.c [LEAP]  CC Container.c [LEAP]  CC Dialog.c [LEAP]  CC Form.c [LEAP]  CC Frame.c [LEAP]  CC Grip.c [LEAP]  CC Label.c [LEAP]  CC List.c [LEAP]  CC Logo.c [LEAP]  CC MenuButton.c [LEAP]  CC Paned.c [LEAP]  CC Panner.c [LEAP]  CC Porthole.c [LEAP]  CC Repeater.c [LEAP]  CC Scrollbar.c [LEAP]  CC ScrolledTable.c [LEAP]  CC Separator.c [LEAP]  CC Simple.c [LEAP]  CC SimpleMenu.c [LEAP]  CC Sme.c [LEAP]  CC SmeBSB.c [LEAP]  CC SmeLine.c [LEAP]  CC StripChart.c [LEAP]  CC table.c [LEAP]  CC Table2.c [LEAP]  CC Text.c [LEAP]  CC TextSink.c [LEAP]  CC TextSrc.c [LEAP]  CC TextAction.c [LEAP]  CC TextPop.c [LEAP]  CC TextTr.c [LEAP]  CC Toggle.c [LEAP]  CC Tree.c [LEAP]  CC Vendor.c [LEAP]  CC Viewport.c [LEAP]  CC XawInit.c [LEAP]  AR libXaw.a ar: creating libXaw.a make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/Xraw' cd src/leap && make install make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/leap' [LEAP]  CC teLeap [LEAP]  CC xTank.c [LEAP]  CC xAction.c xAction.c: In function ‘zActionTwistTorsions’: xAction.c:1108:38: warning: passing argument 1 of ‘BuildRotateAroundBondFromTo’ from incompatible pointer type [-Wincompatible-pointer-types]          BuildRotateAroundBondFromTo( tTank->tank.uUnit,                                       ^ In file included from xAction.c:52:0: build.h:68:14: note: expected ‘CONTAINER {aka struct CONTAINERSTRUCT *}’ but argument is of type ‘UNIT {aka struct *}’  extern void  BuildRotateAroundBondFromTo( CONTAINER cCont,               ^ [LEAP]  CC x3d.c [LEAP]  CC xBasics.c [LEAP]  CC xaLeapc.c [LEAP]  CC xaUnitEditor.c xaUnitEditor.c: In function ‘XAUEAddHydrogensAndBuildExternals’: xaUnitEditor.c:888:35: warning: passing argument 1 of ‘BuildInternalsForSimpleRings’ from incompatible pointer type [-Wincompatible-pointer-types]      BuildInternalsForSimpleRings( uUnit );                                    ^ In file included from xaUnitEditor.c:76:0: build.h:75:14: note: expected ‘CONTAINER {aka struct CONTAINERSTRUCT *}’ but argument is of type ‘UNIT {aka struct *}’  extern void  BuildInternalsForSimpleRings( CONTAINER cContainer );               ^ xaUnitEditor.c: In function ‘XAUESelectedAtomsFlipChirality’: xaUnitEditor.c:1335:30: warning: passing argument 1 of ‘bBuildFlipChiralityFor’ from incompatible pointer type [-Wincompatible-pointer-types]       bBuildFlipChiralityFor( uUnit, aAtom );                               ^ In file included from xaUnitEditor.c:76:0: build.h:71:14: note: expected ‘CONTAINER {aka struct CONTAINERSTRUCT *}’ but argument is of type ‘UNIT {aka struct *}’  extern void  bBuildFlipChiralityFor( CONTAINER cContainer,               ^ [LEAP]  CC xaTable.c xaTable.c: In function ‘XATFindReturn’: xaTable.c:506:9: warning: ‘XKeycodeToKeysym’ is deprecated [-Wdeprecated-declarations]          ksSymbol = XKeycodeToKeysym (GdDisplay, xPEvent->xkey.keycode, 0);          ^ In file included from /usr/include/X11/Intrinsic.h:53:0,                  from /usr/include/X11/IntrinsicP.h:51,                  from xaTable.c:39: /usr/include/X11/Xlib.h:1687:15: note: declared here  extern KeySym XKeycodeToKeysym(                ^ [LEAP]  CC xaAtomTable.c [LEAP]  CC XrawRegistr.c [LEAP]  CC xaCommand.c In file included from xaCommand.c:54:0: xaCommand.c: In function ‘zXACDisplayChildren’: xaCommand.c:103:15: warning: format ‘%lX’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘Widget {aka struct _WidgetRec *}’ [-Wformat=]       PRINTF(( "%lX  ", *wPChildren ));                ^ basics.h:641:57: note: in definition of macro ‘PRINTF’  #define PRINTF(m)               { printf( "+" ); printf m; }                                                          ^ xaCommand.c:119:15: warning: format ‘%lX’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘Widget {aka struct _WidgetRec *}’ [-Wformat=]       PRINTF(( "%lX  ", *wPChildren ));                ^ basics.h:641:57: note: in definition of macro ‘PRINTF’  #define PRINTF(m)               { printf( "+" ); printf m; }                                                          ^ xaCommand.c: In function ‘zXACDisplayWidgetTree’: xaCommand.c:148:14: warning: format ‘%lX’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘Widget {aka struct _WidgetRec *}’ [-Wformat=]      PRINTF(( "%lX  %-20s\n", w, XtName(w) ));               ^ basics.h:641:57: note: in definition of macro ‘PRINTF’  #define PRINTF(m)               { printf( "+" ); printf m; }                                                          ^ xaCommand.c: In function ‘zXACTextProcessOneChar’: xaCommand.c:390:7: warning: passing argument 4 of ‘XAPEPopupParmEditor’ from incompatible pointer type [-Wincompatible-pointer-types]        rResult.oObject );        ^ xaCommand.c:77:13: note: expected ‘PARMSET {aka struct *}’ but argument is of type ‘OBJEKT {aka struct *}’  extern void XAPEPopupParmEditor( Widget, char *, char *, PARMSET );              ^ xaCommand.c:395:7: warning: passing argument 4 of ‘XAUEPopupUnitEditor’ from incompatible pointer type [-Wincompatible-pointer-types]        rResult.oObject );        ^ xaCommand.c:78:13: note: expected ‘UNIT {aka struct *}’ but argument is of type ‘OBJEKT {aka struct *}’  extern void XAUEPopupUnitEditor( Widget, char *, char *, UNIT );              ^ [LEAP]  CC xaTools.c [LEAP]  CC xaAtomParmTable.c [LEAP]  CC xaBondParmTable.c [LEAP]  CC xaAngleParmTable.c [LEAP]  CC xaParmEditor.c [LEAP]  CC xaTorsionParmTable.c [LEAP]  CC xaImproperParmTable.c [LEAP]  CC xaHBondParmTable.c [LEAP]  CC xaLeap ../Xraw/libXaw.a(AsciiSrc.o): In function `InitStringOrFile': AsciiSrc.c:(.text+0x1404): warning: the use of `tmpnam' is dangerous, better use `mkstemp' m4 xaLeap.rm4 > XaLeap_wcl mv teLeap xaLeap /mnt/c/Users/Alen/Documents/Research/amber18//bin mv XaLeap_wcl /mnt/c/Users/Alen/Documents/Research/amber18//dat make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap/src/leap' Copying shell script cp xleap /mnt/c/Users/Alen/Documents/Research/amber18//bin/xleap chmod +x /mnt/c/Users/Alen/Documents/Research/amber18//bin/xleap Copying pixmaps test -d /mnt/c/Users/Alen/Documents/Research/amber18//dat/pixmap || mkdir /mnt/c/Users/Alen/Documents/Research/amber18//dat/pixmap cd pixmap; /bin/cp * /mnt/c/Users/Alen/Documents/Research/amber18//dat/pixmap Finished with the install of LEaP make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap' make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/leap' (cd lib && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' [LIB]  FC new2oldparm.F [LIB]  FC new2oldparm.o make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' (cd addles && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/addles' [ADDLES]  FC lesmain.F [ADDLES]  FC addspace.F [ADDLES]  FC readprm.F [ADDLES]  FC writprm.F [ADDLES]  FC readcrd.F [ADDLES]  FC writcrd.F [ADDLES]  FC pick.F [ADDLES]  FC rline.F [ADDLES]  FC nxt.F [ADDLES]  FC intgr.F [ADDLES]  FC find.F [ADDLES]  FC of.F [ADDLES]  FC geti.F [ADDLES]  FC unit.F [ADDLES]  FC getc.F [ADDLES]  FC alert.F [ADDLES]  FC echo.F [ADDLES]  FC get4c.F [ADDLES]  FC getd.F [ADDLES]  FC wlesprm.F [ADDLES]  FC lesprm.F [ADDLES]  FC random.F90 [ADDLES]  FC les2prm.F [ADDLES]  FC checksz.F [ADDLES]  FC addspace_atm1st.F [ADDLES]  FC ../lib/nxtsec.F [ADDLES]  FC /mnt/c/Users/Alen/Documents/Research/amber18//bin/addles make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/addles' (cd sander && make serial) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sander' cd ../sqm && make libsqm make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sqm' [SQM]  FC qm_print_info.F90 [SQM]  FC qm2_energy.F90 [SQM]  FC qm2_read_nm_and_alloc.F90 [SQM]  FC qm2_scf.F90 qm2_scf.F90:244:0:           old_fock_matrix = fock_matrix  ^ Warning: ‘old_fock_matrix.dim[0].ubound’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SQM]  FC qm2_dftb_ewald.F90 [SQM]  FC qm2_dftb_scf.F90 [SQM]  AR /mnt/c/Users/Alen/Documents/Research/amber18//lib/libsqm.a ar: creating libsqm.a make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sqm' [SANDER]  FC file_io_dat.F90 [SANDER]  FC ../lib/constants.F90 [SANDER]  FC state.F90 [SANDER]  FC memory_module.F90 [SANDER]  FC stack.F90 stack.F90:64:56:                                             blank_routine=" "                                                         1 Warning: Unused PRIVATE module variable ‘blank_routine’ declared at (1) [-Wunused-value] [SANDER]  FC parms.F90 test -e qmmm_module.o || touch qmmm_module.o [SANDER]  FC charmm.F90 [SANDER]  FC molecule.F90 [SANDER]  FC abfqmmm_module.F90 [SANDER]  FC ../lib/random.F90 [SANDER]  FC nose_hoover.F90 [SANDER]  FC pimd_vars.F90 [SANDER]  FC cmd_vars.F90 [SANDER]  FC nose_hoover_init.F90 [SANDER]  FC trace.F90 [SANDER]  FC findmask.F90 [SANDER]  FC softcore.F90 [SANDER]  FC decomp.F90 cd ../pbsa && make -j1 libFpbsa.a make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/pbsa' [PBSA]  FC timer.F90 [PBSA]  FC density.F90 [PBSA]  FC sa_driver.F90 [PBSA]  FC pb_force.F90 [PBSA]  FC pb_iimdrv.F90 [PBSA]  FC interpX.F90 [PBSA]  FC np_force.F90 [PBSA]  FC pb_anaiim.F90 [PBSA]  FC pb_force.F90 [PBSA]  FC pb_iimdrv.F90 [PBSA]  FC pb_nhadrv.F90 [PBSA]  FC pb_augdrv.F90 [PBSA]  FC pb_p3m.F90 [PBSA]  FC pb_fdfrc.F90 [PBSA]  FC memory_module.F90 [PBSA]  FC parms.F90 [PBSA]  FC pb_init.F90 [PBSA]  FC pb_read.F90 [PBSA]  FC pb_write.F90 [PBSA]  FC curv.F90 [PBSA]  FC dsvdc.F90 [PBSA]  FC gen_dx_file.F90 [PBSA]  FC GrToPr.F90 [PBSA]  FC miniop.F90 [PBSA]  FC pb_bldsys.F90 [PBSA]  FC pb_crgview.F90 [PBSA]  FC pb_direct.F90 [PBSA]  FC pb_lsolver.F90 [PBSA]  FC pb_nlsolver.F90 [PBSA]  FC pb_fddrv.F90 [PBSA]  FC pb_list.F90 [PBSA]  FC pb_mpfrc.F90 [PBSA]  FC pbsa_lib.F90 [PBSA]  FC phidev.F90 [PBSA]  FC project.F90 [PBSA]  FC pythag.F90 [PBSA]  FC svbksb.F90 [PBSA]  FC svdcmp.F90 [PBSA]  FC transf.F90 [PBSA]  AR libFpbsa.a ar: creating libFpbsa.a make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/pbsa' test -e poisson_boltzmann.o || touch poisson_boltzmann.o [SANDER]  FC rmsgrd.F90 [SANDER]  FC ../lib/AmberNetcdf.F90 ../lib/AmberNetcdf.F90:734:33:                      velocityVID, ierr, ierr, ierr, TempVID)) return                                  1 Warning: Same actual argument associated with INTENT(OUT) argument ‘timevid’ and INTENT(OUT) argument ‘celllengthvid’ at (1) ../lib/AmberNetcdf.F90:734:33:                      velocityVID, ierr, ierr, ierr, TempVID)) return                                  1 Warning: Same actual argument associated with INTENT(OUT) argument ‘timevid’ and INTENT(OUT) argument ‘cellanglevid’ at (1) ../lib/AmberNetcdf.F90:734:39:                      velocityVID, ierr, ierr, ierr, TempVID)) return                                        1 Warning: Same actual argument associated with INTENT(OUT) argument ‘celllengthvid’ and INTENT(OUT) argument ‘cellanglevid’ at (1) cd ../rism && \ if [ -n "-DRISMSANDER" ]; then \         make amber_rism_interface.SANDER.o; \ else \         test -e amber_rism_interface.SANDER.o || touch amber_rism_interface.SANDER.o; \ fi make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' [RISM] FC rism_report_c.F90 [RISM] FC fftw3.F90 [RISM] FC safemem.F90 [RISM] FC rism_timer_c.F90 [RISM] FC constants.F90 [RISM] FC quaternion.F90 [RISM] FC rism_util.F90 [RISM] FC rism_parm.F90 [RISM] FC rism3d_solute_c.F90 [RISM] FC rism3d_solvent_c.F90 [RISM] FC rism3d_grid_c.F90 [RISM] FC rism3d_fft.F90 [RISM] FC rism_io.F90 [RISM] FC rism3d_opendx.F90 [RISM] FC rism3d_tree_cp.F90 [RISM] FC bspline.F90 [RISM] FC rism3d_potential_c.F90 [RISM] FC rism3d_kh_c.F90 [RISM] FC rism3d_hnc_c.F90 [RISM] FC rism3d_psen_c.F90 [RISM] FC rism3d_closure_c.F90 [RISM] FC mdiis_orig_c.F90 [RISM] FC mdiis_blas_c.F90 [RISM] FC mdiis_blas2_c.F90 [RISM] FC mdiis_c.F90 [RISM] FC rism3d_restart.F90 [RISM] FC rism3d_c.F90 [RISM] FC fce_c.F90 [RISM] FC rism3d_ccp4.F90 [RISM] FC rism3d_xyzv.F90 [RISM] FC array_util.F90 [RISM] FC amber_rism_interface.F90 make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' [SANDER]  FC xref.F90 [SANDER]  FC mdfil.F90 [SANDER]  FC sglds.F90 [SANDER]  FC sander_lib.F90 [SANDER]  FC les.F90 test -e netcdf.o || touch netcdf.o [SANDER]  FC amoeba_mdin.F90 [SANDER]  FC nonbond_list.F90 nonbond_list.F90:692:72:                         nghbptr, nghtran, tranvec, belly, ibelly, balance, &                                                                         1 Warning: Unused dummy argument ‘balance’ at (1) [-Wunused-dummy-argument] nonbond_list.F90:693:32:                         gridpairs, periodic, nogrdptrs)                                 1 Warning: Unused dummy argument ‘gridpairs’ at (1) [-Wunused-dummy-argument] [SANDER]  FC amd.F90 [SANDER]  FC amoeba_multipoles.F90 [SANDER]  FC ew_bspline.F90 ew_bspline.F90:15:16:  integer :: igood                 1 Warning: Unused PRIVATE module variable ‘igood’ declared at (1) [-Wunused-value] ew_bspline.F90:17:63:  integer :: nxtra,pe_xtra(BSPL_MAX_LAYERS),lget(BSPL_MAX_LAYERS)                                                                1 Warning: Unused PRIVATE module variable ‘lget’ declared at (1) [-Wunused-value] ew_bspline.F90:16:32:  integer :: my_ks(BSPL_MAX_ATOMS)                                 1 Warning: Unused PRIVATE module variable ‘my_ks’ declared at (1) [-Wunused-value] ew_bspline.F90:11:32:  integer nbsplist(BSPL_MAX_ATOMS),nbspstrt(BSPL_MAX_LAYERS)                                 1 Warning: Unused PRIVATE module variable ‘nbsplist’ declared at (1) [-Wunused-value] ew_bspline.F90:11:58:  integer nbsplist(BSPL_MAX_ATOMS),nbspstrt(BSPL_MAX_LAYERS)                                                           1 Warning: Unused PRIVATE module variable ‘nbspstrt’ declared at (1) [-Wunused-value] ew_bspline.F90:12:33:  integer nstart,nend,nremain,ndelt,nst                                  1 Warning: Unused PRIVATE module variable ‘ndelt’ declared at (1) [-Wunused-value] ew_bspline.F90:12:19:  integer nstart,nend,nremain,ndelt,nst                    1 Warning: Unused PRIVATE module variable ‘nend’ declared at (1) [-Wunused-value] ew_bspline.F90:12:27:  integer nstart,nend,nremain,ndelt,nst                            1 Warning: Unused PRIVATE module variable ‘nremain’ declared at (1) [-Wunused-value] ew_bspline.F90:12:37:  integer nstart,nend,nremain,ndelt,nst                                      1 Warning: Unused PRIVATE module variable ‘nst’ declared at (1) [-Wunused-value] ew_bspline.F90:12:14:  integer nstart,nend,nremain,ndelt,nst               1 Warning: Unused PRIVATE module variable ‘nstart’ declared at (1) [-Wunused-value] ew_bspline.F90:17:16:  integer :: nxtra,pe_xtra(BSPL_MAX_LAYERS),lget(BSPL_MAX_LAYERS)                 1 Warning: Unused PRIVATE module variable ‘nxtra’ declared at (1) [-Wunused-value] ew_bspline.F90:17:41:  integer :: nxtra,pe_xtra(BSPL_MAX_LAYERS),lget(BSPL_MAX_LAYERS)                                          1 Warning: Unused PRIVATE module variable ‘pe_xtra’ declared at (1) [-Wunused-value] [SANDER]  FC spatial_fft.F90 [SANDER]  FC ips.F90 ips.F90:111:29:        _REAL_  fips0,fips1,fips2,fips3,fips4,fips5                              1 Warning: Unused variable ‘fips0’ declared at (1) [-Wunused-variable] ips.F90:111:35:        _REAL_  fips0,fips1,fips2,fips3,fips4,fips5                                    1 Warning: Unused variable ‘fips1’ declared at (1) [-Wunused-variable] ips.F90:111:41:        _REAL_  fips0,fips1,fips2,fips3,fips4,fips5                                          1 Warning: Unused variable ‘fips2’ declared at (1) [-Wunused-variable] ips.F90:111:47:        _REAL_  fips0,fips1,fips2,fips3,fips4,fips5                                                1 Warning: Unused variable ‘fips3’ declared at (1) [-Wunused-variable] ips.F90:111:53: Warning: Unused variable ‘fips4’ declared at (1) [-Wunused-variable] ips.F90:111:59: Warning: Unused variable ‘fips5’ declared at (1) [-Wunused-variable] ips.F90:93:10:        use amoeba_multipoles, only : coulomb_const_kcal_per_mole,global_multipole           1 Warning: Unused module variable ‘global_multipole’ which has been explicitly imported at (1) [-Wunused-variable] [SANDER]  FC constantph.F90 [SANDER]  FC constante.F90 constante.F90:333:22:  subroutine cnsteinit(x, ig)                       1 Warning: Unused dummy argument ‘x’ at (1) [-Wunused-dummy-argument] [SANDER]  FC remd.F90 [SANDER]  FC bintraj.F90 bintraj.F90:123:65:                          .false., title, vel_ncid, vel_TimeVarID, ierr, &                                                                  1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coordvid’ and INTENT(OUT) argument ‘frcvid’ at (1) bintraj.F90:133:27:                             ierr, VelocVarID, vel_TimeVarID, &                            1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coordvid’ and INTENT(OUT) argument ‘celllengthvid’ at (1) bintraj.F90:159:64:                          .true., title, frc_ncid, frc_TimeVarID, ierr, &                                                                 1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coordvid’ and INTENT(OUT) argument ‘celllengthvid’ at (1) bintraj.F90:13:47:     integer :: remd_valuesVarID, remd_typesVarID, Cell_lengthVarID                                                1 Warning: Unused PRIVATE module variable ‘remd_typesvarid’ declared at (1) [-Wunused-value] [SANDER]  FC lmod.F90 [SANDER]  CC ../sff/rand2.c [SANDER]  CC ../sff/lmodC.c [SANDER]  CC ../sff/xminC.c [SANDER]  FC icosasurf.F90 [SANDER]  FC crg_reloc.F90 [SANDER]  FC egb.F90 egb.F90:31:35:  subroutine allocate_gb( natom,ncopy )                                    1 Warning: Unused dummy argument ‘ncopy’ at (1) [-Wunused-dummy-argument] [SANDER]  FC relax_mat.F90 [SANDER]  FC nmr.F90 [SANDER]  FC multitmd.F90 [SANDER]  FC nfe-constants.F90 [SANDER]  FC nfe-colvar-type.F90 [SANDER]  FC nfe-sander-proxy.F90 [SANDER]  FC nfe-utils.F90 [SANDER]  FC nfe-colvar-math.F90 [SANDER]  FC nfe-colvar-utils.F90 [SANDER]  FC nfe-cv-ANGLE.F90 [SANDER]  FC nfe-cv-TORSION.F90 [SANDER]  FC nfe-cv-DISTANCE.F90 [SANDER]  FC nfe-rmsd.F90 [SANDER]  FC nfe-cv-MULTI_RMSD.F90 [SANDER]  FC nfe-cv-R_OF_GYRATION.F90 [SANDER]  FC nfe-cv-HANDEDNESS.F90 [SANDER]  FC nfe-cv-N_OF_BONDS.F90 [SANDER]  FC nfe-cv-N_OF_STRUCTURES.F90 [SANDER]  FC nfe-cv-LCOD.F90 [SANDER]  FC nfe-cv-COS_OF_DIHEDRAL.F90 [SANDER]  FC nfe-cv-COM_ANGLE.F90 [SANDER]  FC nfe-cv-COM_TORSION.F90 [SANDER]  FC nfe-cv-COM_DISTANCE.F90 [SANDER]  FC nfe-cv-PCA.F90 [SANDER]  FC nfe-cv-SIN_OF_DIHEDRAL.F90 [SANDER]  FC nfe-cv-PAIR_DIHEDRAL.F90 [SANDER]  FC nfe-cv-PATTERN_DIHEDRAL.F90 [SANDER]  FC nfe-cv-DF_COM_DISTANCE.F90 [SANDER]  FC nfe-colvar.F90 [SANDER]  FC nfe-pmd-hooks.F90 [SANDER]  FC nfe-umbrella.F90 nfe-umbrella.F90:761:0:           d2v = d2v + this%coeffs(o)*m4d2v_prod(i)/(this%spacing(i)**2)  ^ Warning: ‘m4d2v_prod[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] nfe-umbrella.F90:658:0:           dv(i) = dv(i) + this%coeffs(o)*m4dv_prod(i)  ^ Warning: ‘m4dv_prod[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC nfe-abmd-hooks.F90 nfe-abmd-hooks.F90:112:49:  type(rand_gen_state),        save :: nfe_abmd_gen                                                  1 Warning: Unused PRIVATE module variable ‘nfe_abmd_gen’ declared at (1) [-Wunused-value] nfe-abmd-hooks.F90:110:63: Warning: Unused PRIVATE module variable ‘selection_constant’ declared at (1) [-Wunused-value] nfe-abmd-hooks.F90:111:62: Warning: Unused PRIVATE module variable ‘selection_epsilon’ declared at (1) [-Wunused-value] nfe-abmd-hooks.F90:109:51:  integer,            private, save :: selection_freq = 0                                                    1 Warning: Unused PRIVATE module variable ‘selection_freq’ declared at (1) [-Wunused-value] [SANDER]  FC nfe-stsm-hooks.F90 nfe-stsm-hooks.F90:42:58: Warning: Unused PRIVATE module variable ‘cv_copy’ declared at (1) [-Wunused-value] nfe-stsm-hooks.F90:46:55: Warning: Unused PRIVATE module variable ‘x_eq’ declared at (1) [-Wunused-value] [SANDER]  FC nfe-value.F90 [SANDER]  FC nfe-smd-hooks.F90 [SANDER]  FC mt19937.F90 [SANDER]  FC nfe-bbmd-ctxt.F90 [SANDER]  FC nfe-bbmd-hooks.F90 [SANDER]  FC nfe-sander-hooks.F90 [SANDER]  FC evb_vars.F90 [SANDER]  FC evb_pimd_init.F90 [SANDER]  FC multisander.F90 test -e qm2_read_nm_and_alloc.o || touch qm2_read_nm_and_alloc.o test -e qmmm_vsolv_module.o || touch qmmm_vsolv_module.o [SANDER]  FC qm2_extern_util_module.F90 test -e elementOrbitalIndex.o || touch elementOrbitalIndex.o test -e utilitiesmodule.o || touch utilitiesmodule.o [SANDER]  FC qm2_extern_adf_module.F90 [SANDER]  FC qm2_extern_gms_module.F90 [SANDER]  FC qm2_extern_tc_module.F90 qm2_extern_tc_module.F90:59:34:    integer, save         :: newcomm ! Initialized in mpi_init subroutine                                   1 Warning: Unused PRIVATE module variable ‘newcomm’ declared at (1) [-Wunused-value] [SANDER]  FC qm2_extern_gau_module.F90 [SANDER]  FC qm2_extern_orc_module.F90 [SANDER]  FC qm2_extern_nw_module.F90 [SANDER]  FC qm2_extern_mrcc_module.F90 [SANDER]  FC qm2_extern_genmpi_module.F90 [SANDER]  FC qm2_extern_qc_module.F90 [SANDER]  FC qm2_extern_lio_module.F90 [SANDER]  FC qm2_extern_fb_module.F90 qm2_extern_fb_module.F90:333:3:  604     format (a,i1)    1 Warning: Label 604 at (1) defined but not used qm2_extern_fb_module.F90:174:16:      integer :: i, ierr                 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] qm2_extern_fb_module.F90:104:37:      character(len=150) :: call_buffer                                      1 Warning: Unused variable ‘call_buffer’ declared at (1) [-Wunused-variable] qm2_extern_fb_module.F90:92:48:      _REAL_              :: dipmom(4,3)          ! Dipole moment {x, y, z, |D|}, {QM, MM, TOT}                                                 1 Warning: Unused variable ‘dipmom’ declared at (1) [-Wunused-variable] qm2_extern_fb_module.F90:100:16:      integer :: i                 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] qm2_extern_fb_module.F90:70:60:    subroutine get_fb_forces( do_grad, nstep, ntpr_default, id, nqmatoms, qmcoords,&                                                             1 Warning: Unused dummy argument ‘id’ at (1) [-Wunused-dummy-argument] qm2_extern_fb_module.F90:94:52: Warning: Unused variable ‘mulliken_charge’ declared at (1) [-Wunused-variable] qm2_extern_fb_module.F90:70:42:    subroutine get_fb_forces( do_grad, nstep, ntpr_default, id, nqmatoms, qmcoords,&                                           1 Warning: Unused dummy argument ‘nstep’ at (1) [-Wunused-dummy-argument] qm2_extern_fb_module.F90:70:56:    subroutine get_fb_forces( do_grad, nstep, ntpr_default, id, nqmatoms, qmcoords,&                                                         1 Warning: Unused dummy argument ‘ntpr_default’ at (1) [-Wunused-dummy-argument] qm2_extern_fb_module.F90:102:22:      integer :: printed =-1 ! Used to tell if we have printed this step yet                       1 Warning: Unused variable ‘printed’ declared at (1) [-Wunused-variable] qm2_extern_fb_module.F90:76:12:          use qmmm_module, only : qmmm_struct             1 Warning: Unused module variable ‘qmmm_struct’ which has been explicitly imported at (1) [-Wunused-variable] qm2_extern_fb_module.F90:71:14:         qmtypes, nclatoms, clcoords, escf, dxyzqm, dxyzcl, charge, spinmult)               1 Warning: Unused dummy argument ‘qmtypes’ at (1) [-Wunused-dummy-argument] qm2_extern_fb_module.F90:71:74:         qmtypes, nclatoms, clcoords, escf, dxyzqm, dxyzcl, charge, spinmult)                                                                           1 Warning: Unused dummy argument ‘spinmult’ at (1) [-Wunused-dummy-argument] qm2_extern_fb_module.F90:95:58: Warning: Unused variable ‘total_mulliken_charge’ declared at (1) [-Wunused-variable] [SANDER]  FC qm2_extern_module.F90 [SANDER]  FC sebomd_module.F90 [SANDER]  FC sebomd_arrays.F90 [SANDER]  FC fastwt.F90 [SANDER]  FC ew_recip.F90 [SANDER]  FC amoeba_runmd.F90 [SANDER]  FC amoeba_induced.F90 [SANDER]  FC amoeba_vdw.F90 [SANDER]  FC amoeba_adjust.F90 amoeba_mpole_index.h:19:41:  integer,dimension(10),parameter :: deriv1 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv1’ declared at (1) [-Wunused-value] amoeba_mpole_index.h:23:41:  integer,dimension(10),parameter :: deriv2 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv2’ declared at (1) [-Wunused-value] amoeba_mpole_index.h:27:41:  integer,dimension(10),parameter :: deriv3 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv3’ declared at (1) [-Wunused-value] amoeba_adjust.F90:2071:29:     _REAL_ :: A(0:5),B(0:5),C(0:5),BD(4),fac,fact,del                              1 Warning: Unused variable ‘a’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2071:36:     _REAL_ :: A(0:5),B(0:5),C(0:5),BD(4),fac,fact,del                                     1 Warning: Unused variable ‘b’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2071:49:     _REAL_ :: A(0:5),B(0:5),C(0:5),BD(4),fac,fact,del                                                  1 Warning: Unused variable ‘bd’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2071:43:     _REAL_ :: A(0:5),B(0:5),C(0:5),BD(4),fac,fact,del                                            1 Warning: Unused variable ‘c’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2069:81: Warning: Unused variable ‘d_switch_dx’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2080:30:     _REAL_  :: dumpr0,dumpr1,dumpr2,dumpr3,dumpr4                               1 Warning: Unused variable ‘dumpr0’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2069:62:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                               1 Warning: Unused variable ‘dx’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2049:41:                                    ee_type,eedmeth,dxdr,thole_expon_coeff, &                                          1 Warning: Unused dummy argument ‘ee_type’ at (1) [-Wunused-dummy-argument] amoeba_adjust.F90:2048:59:                                    ewaldcof,eedtbdns,eed_cub,eed_lin, &                                                            1 Warning: Unused dummy argument ‘eed_cub’ at (1) [-Wunused-dummy-argument] amoeba_adjust.F90:2048:67:                                    ewaldcof,eedtbdns,eed_cub,eed_lin, &                                                                    1 Warning: Unused dummy argument ‘eed_lin’ at (1) [-Wunused-dummy-argument] amoeba_adjust.F90:2049:49:                                    ee_type,eedmeth,dxdr,thole_expon_coeff, &                                                  1 Warning: Unused dummy argument ‘eedmeth’ at (1) [-Wunused-dummy-argument] amoeba_adjust.F90:2071:58: Warning: Unused variable ‘fact’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2084:31:     integer :: i,j,k,n,n_adj,ind,jj                                1 Warning: Unused variable ‘ind’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2084:21:     integer :: i,j,k,n,n_adj,ind,jj                      1 Warning: Unused variable ‘n’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2074:28:     _REAL_ :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35),Rn_5(56)                             1 Warning: Unused variable ‘rn’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2074:36:     _REAL_ :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35),Rn_5(56)                                     1 Warning: Unused variable ‘rn_1’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2074:45:     _REAL_ :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35),Rn_5(56)                                              1 Warning: Unused variable ‘rn_2’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2069:69:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                                      1 Warning: Unused variable ‘switch’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:2069:84: Warning: Unused variable ‘xx’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:544:34:     _REAL_ :: D(3),A(0:3),B(0:3),BD(3),fac,fact,del,gphi_i(3),gphi_j(3)                                   1 Warning: Unused variable ‘a’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:544:41:     _REAL_ :: D(3),A(0:3),B(0:3),BD(3),fac,fact,del,gphi_i(3),gphi_j(3)                                          1 Warning: Unused variable ‘b’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:544:47:     _REAL_ :: D(3),A(0:3),B(0:3),BD(3),fac,fact,del,gphi_i(3),gphi_j(3)                                                1 Warning: Unused variable ‘bd’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:544:27:     _REAL_ :: D(3),A(0:3),B(0:3),BD(3),fac,fact,del,gphi_i(3),gphi_j(3)                            1 Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:543:81: Warning: Unused variable ‘d_switch_dx’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:549:30:     _REAL_  :: dumpr0,dumpr1,dumpr2,dumpr3,dumpr4                               1 Warning: Unused variable ‘dumpr0’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:549:58: Warning: Unused variable ‘dumpr4’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:543:62:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                               1 Warning: Unused variable ‘dx’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:525:42:                                     ee_type,eedmeth,dxdr,thole_expon_coeff, &                                           1 Warning: Unused dummy argument ‘ee_type’ at (1) [-Wunused-dummy-argument] amoeba_adjust.F90:524:60:                                     ewaldcof,eedtbdns,eed_cub,eed_lin, &                                                             1 Warning: Unused dummy argument ‘eed_cub’ at (1) [-Wunused-dummy-argument] amoeba_adjust.F90:524:68:                                     ewaldcof,eedtbdns,eed_cub,eed_lin, &                                                                     1 Warning: Unused dummy argument ‘eed_lin’ at (1) [-Wunused-dummy-argument] amoeba_adjust.F90:525:50:                                     ee_type,eedmeth,dxdr,thole_expon_coeff, &                                                   1 Warning: Unused dummy argument ‘eedmeth’ at (1) [-Wunused-dummy-argument] amoeba_adjust.F90:544:56:     _REAL_ :: D(3),A(0:3),B(0:3),BD(3),fac,fact,del,gphi_i(3),gphi_j(3)                                                         1 Warning: Unused variable ‘fact’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:552:31:     integer :: i,j,k,n,n_adj,ind                                1 Warning: Unused variable ‘ind’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:552:21:     integer :: i,j,k,n,n_adj,ind                      1 Warning: Unused variable ‘n’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:546:29:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20)                              1 Warning: Unused variable ‘rn’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:546:37:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20)                                      1 Warning: Unused variable ‘rn_1’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:543:69:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                                      1 Warning: Unused variable ‘switch’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:550:36: Warning: Unused variable ‘wtips’ declared at (1) [-Wunused-variable] amoeba_adjust.F90:543:84: Warning: Unused variable ‘xx’ declared at (1) [-Wunused-variable] [SANDER]  FC amoeba_recip.F90 [SANDER]  FC amoeba_valence.F90 amoeba_valence.F90:1263:71: Warning: Unused PRIVATE module variable ‘equil_value’ declared at (1) [-Wunused-value] [SANDER]  FC amoeba_direct.F90 amoeba_mpole_index.h:19:41:  integer,dimension(10),parameter :: deriv1 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv1’ declared at (1) [-Wunused-value] amoeba_mpole_index.h:23:41:  integer,dimension(10),parameter :: deriv2 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv2’ declared at (1) [-Wunused-value] amoeba_mpole_index.h:27:41:  integer,dimension(10),parameter :: deriv3 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv3’ declared at (1) [-Wunused-value] amoeba_direct.F90:1917:29:     _REAL_ :: B(0:5),BD(5),fac,fact,del,phi(20),gmj(10),gmi(10),tmi(10)                              1 Warning: Unused variable ‘b’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1917:35:     _REAL_ :: B(0:5),BD(5),fac,fact,del,phi(20),gmj(10),gmi(10),tmi(10)                                    1 Warning: Unused variable ‘bd’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1915:81: Warning: Unused variable ‘d_switch_dx’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1915:62:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                               1 Warning: Unused variable ‘dx’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1889:57:                                       ee_type,eedmeth,dxdr,ee_dsum_cut, &                                                          1 Warning: Unused dummy argument ‘dxdr’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:1889:44:                                       ee_type,eedmeth,dxdr,ee_dsum_cut, &                                             1 Warning: Unused dummy argument ‘ee_type’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:1888:62:                                       ewaldcof,eedtbdns,eed_cub,eed_lin, &                                                               1 Warning: Unused dummy argument ‘eed_cub’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:1888:70:                                       ewaldcof,eedtbdns,eed_cub,eed_lin, &                                                                       1 Warning: Unused dummy argument ‘eed_lin’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:1889:52:                                       ee_type,eedmeth,dxdr,ee_dsum_cut, &                                                     1 Warning: Unused dummy argument ‘eedmeth’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:1917:44:     _REAL_ :: B(0:5),BD(5),fac,fact,del,phi(20),gmj(10),gmi(10),tmi(10)                                             1 Warning: Unused variable ‘fact’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1914:32:     integer :: m,n,np,itran,j,ind,jj                                 1 Warning: Unused variable ‘ind’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1914:17:     integer :: m,n,np,itran,j,ind,jj                  1 Warning: Unused variable ‘n’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1922:29:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35),Rn_5(56)                              1 Warning: Unused variable ‘rn’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1922:37:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35),Rn_5(56)                                      1 Warning: Unused variable ‘rn_1’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1922:46:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35),Rn_5(56)                                               1 Warning: Unused variable ‘rn_2’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1922:55:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35),Rn_5(56)                                                        1 Warning: Unused variable ‘rn_3’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1915:69:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                                      1 Warning: Unused variable ‘switch’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1915:59:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                            1 Warning: Unused variable ‘x’ declared at (1) [-Wunused-variable] amoeba_direct.F90:1915:84: Warning: Unused variable ‘xx’ declared at (1) [-Wunused-variable] amoeba_direct.F90:608:29:     _REAL_ :: B(0:3),BD(3),fac,fact,del,gphi_i(3),gphi_j(3)                              1 Warning: Unused variable ‘b’ declared at (1) [-Wunused-variable] amoeba_direct.F90:608:35:     _REAL_ :: B(0:3),BD(3),fac,fact,del,gphi_i(3),gphi_j(3)                                    1 Warning: Unused variable ‘bd’ declared at (1) [-Wunused-variable] amoeba_direct.F90:607:81: Warning: Unused variable ‘d_switch_dx’ declared at (1) [-Wunused-variable] amoeba_direct.F90:607:62:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                               1 Warning: Unused variable ‘dx’ declared at (1) [-Wunused-variable] amoeba_direct.F90:579:57:                                       ee_type,eedmeth,dxdr,ee_dsum_cut, &                                                          1 Warning: Unused dummy argument ‘dxdr’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:579:44:                                       ee_type,eedmeth,dxdr,ee_dsum_cut, &                                             1 Warning: Unused dummy argument ‘ee_type’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:578:62:                                       ewaldcof,eedtbdns,eed_cub,eed_lin, &                                                               1 Warning: Unused dummy argument ‘eed_cub’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:578:70:                                       ewaldcof,eedtbdns,eed_cub,eed_lin, &                                                                       1 Warning: Unused dummy argument ‘eed_lin’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:579:52:                                       ee_type,eedmeth,dxdr,ee_dsum_cut, &                                                     1 Warning: Unused dummy argument ‘eedmeth’ at (1) [-Wunused-dummy-argument] amoeba_direct.F90:608:44:     _REAL_ :: B(0:3),BD(3),fac,fact,del,gphi_i(3),gphi_j(3)                                             1 Warning: Unused variable ‘fact’ declared at (1) [-Wunused-variable] amoeba_direct.F90:606:32:     integer :: m,n,np,itran,j,ind                                 1 Warning: Unused variable ‘ind’ declared at (1) [-Wunused-variable] amoeba_direct.F90:606:17:     integer :: m,n,np,itran,j,ind                  1 Warning: Unused variable ‘n’ declared at (1) [-Wunused-variable] amoeba_direct.F90:610:29:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20)                              1 Warning: Unused variable ‘rn’ declared at (1) [-Wunused-variable] amoeba_direct.F90:610:37:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20)                                      1 Warning: Unused variable ‘rn_1’ declared at (1) [-Wunused-variable] amoeba_direct.F90:610:46: Warning: Unused variable ‘rn_2’ declared at (1) [-Wunused-variable] amoeba_direct.F90:607:69:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                                      1 Warning: Unused variable ‘switch’ declared at (1) [-Wunused-variable] amoeba_direct.F90:607:59:     _REAL_ :: delx,dely,delz,delr2,delr,delr2inv,x,dx,switch,d_switch_dx,xx                                                            1 Warning: Unused variable ‘x’ declared at (1) [-Wunused-variable] amoeba_direct.F90:607:84: Warning: Unused variable ‘xx’ declared at (1) [-Wunused-variable] [SANDER]  FC amoeba_self.F90 amoeba_mpole_index.h:19:41:  integer,dimension(10),parameter :: deriv1 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv1’ declared at (1) [-Wunused-value] amoeba_mpole_index.h:23:41:  integer,dimension(10),parameter :: deriv2 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv2’ declared at (1) [-Wunused-value] amoeba_mpole_index.h:27:41:  integer,dimension(10),parameter :: deriv3 =  &                                          1 Warning: Unused PRIVATE module variable ‘deriv3’ declared at (1) [-Wunused-value] amoeba_self.F90:333:44:     _REAL_ :: delx,dely,delz,B(0:4),fac,fact,gmi(10),phi(10),i_di(3), &                                             1 Warning: Unused variable ‘b’ declared at (1) [-Wunused-variable] amoeba_self.F90:333:27:     _REAL_ :: delx,dely,delz,B(0:4),fac,fact,gmi(10),phi(10),i_di(3), &                            1 Warning: Unused variable ‘delx’ declared at (1) [-Wunused-variable] amoeba_self.F90:333:32:     _REAL_ :: delx,dely,delz,B(0:4),fac,fact,gmi(10),phi(10),i_di(3), &                                 1 Warning: Unused variable ‘dely’ declared at (1) [-Wunused-variable] amoeba_self.F90:333:37:     _REAL_ :: delx,dely,delz,B(0:4),fac,fact,gmi(10),phi(10),i_di(3), &                                      1 Warning: Unused variable ‘delz’ declared at (1) [-Wunused-variable] amoeba_self.F90:333:48:     _REAL_ :: delx,dely,delz,B(0:4),fac,fact,gmi(10),phi(10),i_di(3), &                                                 1 Warning: Unused variable ‘fac’ declared at (1) [-Wunused-variable] amoeba_self.F90:333:53:     _REAL_ :: delx,dely,delz,B(0:4),fac,fact,gmi(10),phi(10),i_di(3), &                                                      1 Warning: Unused variable ‘fact’ declared at (1) [-Wunused-variable] amoeba_self.F90:337:16:     integer i,j,n                 1 Warning: Unused variable ‘n’ declared at (1) [-Wunused-variable] amoeba_self.F90:335:29:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35)                              1 Warning: Unused variable ‘rn’ declared at (1) [-Wunused-variable] amoeba_self.F90:335:37:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35)                                      1 Warning: Unused variable ‘rn_1’ declared at (1) [-Wunused-variable] amoeba_self.F90:335:46:     _REAL_  :: Rn(1),Rn_1(4),Rn_2(10),Rn_3(20),Rn_4(35)                                               1 Warning: Unused variable ‘rn_2’ declared at (1) [-Wunused-variable] amoeba_self.F90:335:55: Warning: Unused variable ‘rn_3’ declared at (1) [-Wunused-variable] [SANDER]  FC amoeba_interface.F90 [SANDER]  FC pupildata.F90 pupildata.F90:306:54:  subroutine add_vdwqmqm ( q, f, ener, ntypes, atom_name,     &                                                       1 Warning: Unused dummy argument ‘atom_name’ at (1) [-Wunused-dummy-argument] pupildata.F90:307:40:                                 atom_type, atom_type_index  )                                         1 Warning: Unused dummy argument ‘atom_type’ at (1) [-Wunused-dummy-argument] pupildata.F90:306:43:  subroutine add_vdwqmqm ( q, f, ener, ntypes, atom_name,     &                                            1 Warning: Unused dummy argument ‘ntypes’ at (1) [-Wunused-dummy-argument] [SANDER]  FC apbs_vars.F90 [SANDER]  FC apbs.F90 [SANDER]  FC xray_globals.F90 [SANDER]  FC xray_utils.F90 xray_utils.F90:181:26:        c = amplitude*cmplx(cos(phase),sin(phase))                           1 Warning: Conversion from REAL(8) to default-kind COMPLEX(4) at (1) might lose precision, consider using the KIND argument [-Wconversion] xray_utils.F90:165:23:        polar_c8 = cmplx(abs(c),phase)                        1 Warning: Conversion from REAL(8) to default-kind COMPLEX(4) at (1) might lose precision, consider using the KIND argument [-Wconversion] [SANDER]  FC xray_reciprocal_space.F90 xray_reciprocal_space.F90:238:0:              beta(:), beta_try(:,:)  ^ Warning: ‘beta_try.dim[1].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized] xray_reciprocal_space.F90:238:0: Warning: ‘MEM[(struct array2_real(kind=8) &)&beta_try].dim[0].ubound’ may be used uninitialized in this function [-Wmaybe-uninitialized] xray_reciprocal_space.F90:238:0: Warning: ‘beta_try.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] xray_reciprocal_space.F90:303:0:                    (i-1)*params_per_set+B23) = anisoB_refine  ^ Warning: ‘MEM[(logical(kind=4)[6] *)&anisob_refine + 20B]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xray_reciprocal_space.F90:303:0: Warning: ‘MEM[(logical(kind=4)[6] *)&anisob_refine + 16B]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xray_reciprocal_space.F90:303:0: Warning: ‘MEM[(logical(kind=4)[6] *)&anisob_refine + 12B]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xray_reciprocal_space.F90:303:0: Warning: ‘MEM[(logical(kind=4)[6] *)&anisob_refine + 8B]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xray_reciprocal_space.F90:303:0: Warning: ‘MEM[(logical(kind=4)[6] *)&anisob_refine + 4B]’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC xray_real_space.F90 [SANDER]  FC xray_fftpack.F90 xray_fftpack.F90:259:0:           ntry = ntry+2  ^ Warning: ‘ntry’ may be used uninitialized in this function [-Wmaybe-uninitialized] xray_fftpack.F90:327:0:           ntry = ntry+2  ^ Warning: ‘ntry’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC xray_FFT.F90 xray_FFT.F90:83:38:              num_hkl,Fcalc,hkl_selected, & ! reflections                                       1 Warning: Unused dummy argument ‘hkl_selected’ at (1) [-Wunused-dummy-argument] xray_FFT.F90:105:21:        integer :: i, j, ih,ik,il, unit                      1 Warning: Unused variable ‘j’ declared at (1) [-Wunused-variable] xray_FFT.F90:105:37:        integer :: i, j, ih,ik,il, unit                                      1 Warning: Unused variable ‘unit’ declared at (1) [-Wunused-variable] [SANDER]  FC xray_fourier.F90 [SANDER]  FC xray_interface.F90 xray_interface.F90:571:23:        integer :: status, alloc_status, num_selected, dealloc_status                        1 Warning: Unused variable ‘status’ declared at (1) [-Wunused-variable] [SANDER]  FC mbar.F90 [SANDER]  FC linear_response.F90 [SANDER]  FC trajene.F90 trajene.F90:94:25:                           err, cellLengthVID, cellAngleVID, err)) then                          1 Warning: Same actual argument associated with INTENT(OUT) argument ‘timevid’ and INTENT(OUT) argument ‘tempvid’ at (1) [SANDER]  FC emap.F90 emap.F90:1422:0:        _REAL_ RESO  ^ Warning: ‘reso’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC barostats.F90 barostats.F90:287:0:              delta_area = ucell(1,1) * ucell(2,2) - delta_area  ^ Warning: ‘delta_area’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC scaledMD.F90 [SANDER]  FC music_module.F90 [SANDER]  FC sander.F90 [SANDER]  FC cshf.F90 [SANDER]  FC nmrcal.F90 [SANDER]  FC mtmdcall.F90 [SANDER]  FC pearsn.F90 [SANDER]  FC printe.F90 [SANDER]  FC runmin.F90 [SANDER]  FC dssp.F90 [SANDER]  FC rdparm.F90 [SANDER]  FC lscivr_vars.F90 [SANDER]  FC md_scheme.F90 md_scheme.F90:65:22:      integer :: i, j, k, idof                       1 Warning: Unused variable ‘k’ declared at (1) [-Wunused-variable] [SANDER]  FC mdin_emil_dat.F90 mdin_emil_dat.F90:32:47:    integer                          :: mdin_unit = 5                                                1 Warning: Unused PRIVATE module variable ‘mdin_unit’ declared at (1) [-Wunused-value] [SANDER]  FC emil.F90 emil.F90:58:66:     integer, dimension(:), allocatable, save :: emil_atoms_reverted                                                                   1 Warning: Unused PRIVATE module variable ‘emil_atoms_reverted’ declared at (1) [-Wunused-value] [SANDER]  FC ew_bndpol.F90 [SANDER]  FC mdread.F90 [SANDER]  FC locmem.F90 [SANDER]  FC qmmm_adaptive_module.F90 qmmm_adaptive_module.F90:2046:57:    subroutine adaptive_qmmm (natom, unimaged_coords, force)                                                          1 Warning: Unused dummy argument ‘force’ at (1) [-Wunused-dummy-argument] qmmm_adaptive_module.F90:2046:50:    subroutine adaptive_qmmm (natom, unimaged_coords, force)                                                   1 Warning: Unused dummy argument ‘unimaged_coords’ at (1) [-Wunused-dummy-argument] [SANDER]  FC sinr_t.F90 sinr_t.F90:578:31:       integer :: ind,i,k,nL,ierr                                1 Warning: Unused variable ‘ierr’ declared at (1) [-Wunused-variable] sinr_t.F90:449:50:     subroutine sinr_write_vels(v,nsteps,istart,iend,tau,sd)                                                   1 Warning: Unused dummy argument ‘iend’ at (1) [-Wunused-dummy-argument] sinr_t.F90:449:45:     subroutine sinr_write_vels(v,nsteps,istart,iend,tau,sd)                                              1 Warning: Unused dummy argument ‘istart’ at (1) [-Wunused-dummy-argument] sinr_t.F90:359:39:     subroutine sinr_temp(v,m,istart,iend,sd)                                        1 Warning: Unused dummy argument ‘iend’ at (1) [-Wunused-dummy-argument] sinr_t.F90:359:34:     subroutine sinr_temp(v,m,istart,iend,sd)                                   1 Warning: Unused dummy argument ‘istart’ at (1) [-Wunused-dummy-argument] sinr_t.F90:56:37:       integer :: natom,nkija,mpic,ierr                                      1 Warning: Unused variable ‘ierr’ declared at (1) [-Wunused-variable] sinr_t.F90:56:32:       integer :: natom,nkija,mpic,ierr                                 1 Warning: Unused variable ‘mpic’ declared at (1) [-Wunused-variable] [SANDER]  FC runmd.F90 runmd.F90:4334:1:    write(fh_ek, '(I10,2(1x,F14.4))') nstep, ekph, ekph*onefac(1)  1 Warning: Nonconforming tab character at (1) [-Wtabs] runmd.F90:4775:1:    ekhf = ekhf / tspan  1 Warning: Nonconforming tab character at (1) [-Wtabs] runmd.F90:4776:1:    ekhf2 = ekhf2/tspan - ekhf*ekhf  1 Warning: Nonconforming tab character at (1) [-Wtabs] runmd.F90:4777:1:    ekhf2 = sqrt(ekhf2)  1 Warning: Nonconforming tab character at (1) [-Wtabs] runmd.F90:375:41:    _REAL_ :: x_centroid(3,natom) ! for PIMD                                          1 Warning: Unused variable ‘x_centroid’ declared at (1) [-Wunused-variable] runmd.F90:81:6:    use full_pimd_vars, only: totener,totenert,totenert2,mybeadid,xall       1 Warning: Unused module variable ‘xall’ which has been explicitly imported at (1) [-Wunused-variable] runmd.F90:227:0:    _REAL_ boltz, etlci, davalev, clfs, tkik, rndbim(3)  ^ Warning: ‘boltz’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC relaxmd.F90 [SANDER]  FC quench.F90 [SANDER]  FC binrestart.F90 binrestart.F90:17:48:     integer, save :: repidx_var_id, crdidx_var_id                                                 1 Warning: Unused PRIVATE module variable ‘crdidx_var_id’ declared at (1) [-Wunused-value] binrestart.F90:15:59:     integer, save :: remd_indices_var_id, remd_groups_var_id                                                            1 Warning: Unused PRIVATE module variable ‘remd_groups_var_id’ declared at (1) [-Wunused-value] binrestart.F90:15:39:     integer, save :: remd_indices_var_id, remd_groups_var_id                                        1 Warning: Unused PRIVATE module variable ‘remd_indices_var_id’ declared at (1) [-Wunused-value] binrestart.F90:17:33:     integer, save :: repidx_var_id, crdidx_var_id                                  1 Warning: Unused PRIVATE module variable ‘repidx_var_id’ declared at (1) [-Wunused-value] binrestart.F90:345:44:  subroutine read_nc_remd_types(filename,title,remd_types,remd_dimension)                                             1 Warning: Dummy argument ‘title’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument] binrestart.F90:308:48:  subroutine read_nc_remd_dimension(filename,title,remd_dimension)                                                 1 Warning: Dummy argument ‘title’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument] [SANDER]  FC getcor.F90 getcor.F90:45:52:     integer, dimension(:), allocatable :: lremd_types                                                     1 Warning: Unused variable ‘lremd_types’ declared at (1) [-Wunused-variable] [SANDER]  FC degcnt.F90 [SANDER]  FC decnvh.F90 [SANDER]  FC parallel.F90 [SANDER]  FC shake.F90 [SANDER]  FC rattle.F90 rattle.F90:198:6:     321 format(/5x,'Velocity resetting (RATTLEV) cannot be accomplished,', &       1 Warning: Label 321 at (1) defined but not used rattle.F90:34:41:     _REAL_ winvi,winvj,diff,rrpr,acor,xh,toler,rvdot, &                                          1 Warning: Unused variable ‘rrpr’ declared at (1) [-Wunused-variable] [SANDER]  FC ene.F90 [SANDER]  FC mdwrit.F90 mdwrit.F90:8:63:  subroutine mdwrit(nstep,nr,ntxo,ntb,x,v,tt,temp0, solvph, solve)                                                                1 Warning: Unused dummy argument ‘solve’ at (1) [-Wunused-dummy-argument] mdwrit.F90:8:56:  subroutine mdwrit(nstep,nr,ntxo,ntb,x,v,tt,temp0, solvph, solve)                                                         1 Warning: Unused dummy argument ‘solvph’ at (1) [-Wunused-dummy-argument] [SANDER]  FC minrit.F90 [SANDER]  FC set.F90 set.F90:281:47:       call read_nc_restart(filename,title1,1,nr,xc,xc,lremd_values,remd_dimension,restarttime)                                                1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coords’ and INTENT(OUT) argument ‘velo’ at (1) [SANDER]  FC dynlib.F90 [SANDER]  FC nmlsrc.F90 [SANDER]  FC ew_dipole_recip.F90 [SANDER]  FC pol_gauss.F90 pol_gauss.F90:748:21:           integer :: i                      1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] pol_gauss.F90:642:71: Warning: Unused variable ‘dx’ declared at (1) [-Wunused-variable] pol_gauss.F90:631:57:        subroutine Calc_b0_b1 (delr, b_exp, b0, b1, eed_cub)                                                          1 Warning: Unused dummy argument ‘eed_cub’ at (1) [-Wunused-dummy-argument] pol_gauss.F90:644:24:           INTEGER  :: ind                         1 Warning: Unused variable ‘ind’ declared at (1) [-Wunused-variable] pol_gauss.F90:534:26:                 delr, delr2, eelt, epol, dfx, dfy, dfz, dotjr, dotir, dotij, &                           1 Warning: Unused dummy argument ‘delr2’ at (1) [-Wunused-dummy-argument] pol_gauss.F90:533:72:        subroutine Calc_Dip_Gauss_Correc (i, j, delx, dely, delz, delr2inv, &                                                                         1 Warning: Unused dummy argument ‘delr2inv’ at (1) [-Wunused-dummy-argument] pol_gauss.F90:538:64:                 dphij_dx_cor, dphij_dy_cor, dphij_dz_cor, eed_cub)                                                                 1 Warning: Unused dummy argument ‘eed_cub’ at (1) [-Wunused-dummy-argument] pol_gauss.F90:534:32:                 delr, delr2, eelt, epol, dfx, dfy, dfz, dotjr, dotir, dotij, &                                 1 Warning: Unused dummy argument ‘eelt’ at (1) [-Wunused-dummy-argument] pol_gauss.F90:554:54:           _REAL_ :: b_exp, b0, b1, b2, b3, qq, term, termi, termj, termr                                                       1 Warning: Unused variable ‘qq’ declared at (1) [-Wunused-variable] pol_gauss.F90:497:76: Warning: Unused variable ‘dx’ declared at (1) [-Wunused-variable] pol_gauss.F90:467:76: Warning: Unused variable ‘dx’ declared at (1) [-Wunused-variable] pol_gauss.F90:439:71: Warning: Unused variable ‘dx’ declared at (1) [-Wunused-variable] pol_gauss.F90:303:63:           _REAL_  :: delx, dely, delz, delr2, delr, df,dfx,dfy,dfz                                                                1 Warning: Unused variable ‘df’ declared at (1) [-Wunused-variable] pol_gauss.F90:96:27:           integer :: i, r, a                            1 Warning: Unused variable ‘a’ declared at (1) [-Wunused-variable] pol_gauss.F90:96:24:           integer :: i, r, a                         1 Warning: Unused variable ‘r’ declared at (1) [-Wunused-variable] [SANDER]  FC spatial_recip.F90 [SANDER]  FC ew_force.F90 [SANDER]  FC ew_setup.F90 [SANDER]  FC ew_box.F90 [SANDER]  FC ew_fft.F90 [SANDER]  FC short_ene.F90 short_ene.F90:1935:0:        b3 = b3 * lambda7  ^ Warning: ‘lambda7’ may be used uninitialized in this function [-Wmaybe-uninitialized] short_ene.F90:1934:0:        b2 = b2 * lambda5  ^ Warning: ‘lambda5’ may be used uninitialized in this function [-Wmaybe-uninitialized] short_ene.F90:1933:0:        b1 = b1 * lambda3  ^ Warning: ‘lambda3’ may be used uninitialized in this function [-Wmaybe-uninitialized] ew_directe.h:80:0:     dfz = delz*df  ^ Warning: ‘df’ may be used uninitialized in this function [-Wmaybe-uninitialized] short_ene.F90:302:0:    _REAL_ delx,dely,delz,delr, delr2, cgi, cgj, delr2inv, r6, f6, f12, df, &  ^ note: ‘df’ was declared here [SANDER]  FC pcshift.F90 [SANDER]  FC align.F90 [SANDER]  FC csa.F90 [SANDER]  FC rfree.F90 [SANDER]  FC rgroup.F90 [SANDER]  FC amopen.F90 [SANDER]  FC debug.F90 [SANDER]  FC ew_recip_reg.F90 [SANDER]  FC ew_handle_dips.F90 [SANDER]  FC mexit.F90 [SANDER]  FC new_time.F90 [SANDER]  FC extra_pts.F90 extra_pts.F90:1792:0:        c3 = c3 * lambda7  ^ Warning: ‘lambda7’ may be used uninitialized in this function [-Wmaybe-uninitialized] extra_pts.F90:1791:0:        c2 = c2 * lambda5  ^ Warning: ‘lambda5’ may be used uninitialized in this function [-Wmaybe-uninitialized] extra_pts.F90:1790:0:        c1 = c1 * lambda3  ^ Warning: ‘lambda3’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC thermo_int.F90 [SANDER]  FC matinv.F90 [SANDER]  FC assert.F90 [SANDER]  FC erfcfun.F90 [SANDER]  FC prn_dipoles.F90 [SANDER]  FC iwrap2.F90 test -e qmmm_nml_module.o || touch qmmm_nml_module.o test -e qmmm_struct_module.o || touch qmmm_struct_module.o [SANDER]  FC qm_mm.F90 [SANDER]  FC qm_ewald.F90 [SANDER]  FC qmmm_vsolv.F90 qmmm_vsolv.F90:536:0:           vec3(1:3) = vec2(1:3) - vec1(1:3)  ^ Warning: ‘vec1[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] qmmm_vsolv.F90:536:0: Warning: ‘vec1[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] qmmm_vsolv.F90:536:0: Warning: ‘vec1[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN       -c -o qm2_read_adf_results.o qm2_read_adf_results.c gcc -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN       -c -o KFReader.o KFReader.c gcc -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN       -c -o ArrayList.o ArrayList.c [SANDER]  FC prn_qmmm_dipole.F90 [SANDER]  FC pimd_force.F90 [SANDER]  FC pimd_init.F90 [SANDER]  FC cmd_matrix.F90 make -C ../emil install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/emil' [EMIL]  CXX amberInterface.C [EMIL]  CXX amberNonbonds.C [EMIL]  CXX defineTopo.C [EMIL]  CXX forces.C [EMIL]  CXX initialise.C [EMIL]  CXX inout.C [EMIL]  CXX jonkerVolgenant.C [EMIL]  CXX lap.C [EMIL]  CXX linearAssignment.C [EMIL]  CXX mcMoves.C [EMIL]  CXX mtrand.C [EMIL]  CXX relocMove.C [EMIL]  CXX reportFreeEnergy.C [EMIL]  CXX setup.C [EMIL]  CXX softForce.C [EMIL]  CXX stepLambda.C [EMIL]  CXX swapMove.C [EMIL]  CXX tools.C [EMIL]  CXX wellMove.C [EMIL]  AR /mnt/c/Users/Alen/Documents/Research/amber18//lib/libemil.a ar: creating /mnt/c/Users/Alen/Documents/Research/amber18//lib/libemil.a make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/emil' cd ../sebomd && make sebomd.a make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sebomd'       [SEBOMD] [F90] [OPT] se_corrections_params.F90       [SEBOMD] [F90] [OPT] se_inter.F90       [SEBOMD] [F90] [OPT] se_corrections_tools.F90       [SEBOMD] [F90] [OPT] se_corrections_module.F90       [SEBOMD] [F77] [OPT] se_atmchg.F       [SEBOMD] [F90] [OPT] se_backinbox.F90       [SEBOMD] [F77] [OPT] se_balance.F       [SEBOMD] [F77] [OPT] block.F       [SEBOMD] [F77] [OPT] se_bond_order_wrapper.F       [SEBOMD] [F90] [OPT] se_bond_order_write.F90       [SEBOMD] [F77] [OPT] se_bpair.F       [SEBOMD] [F77] [OPT] se_bsort.F       [SEBOMD] [F77] [OPT] se_bspline.F       [SEBOMD] [F77] [OPT] se_clustsub.F       [SEBOMD] [F77] [OPT] se_debug.F       [SEBOMD] [F90] [OPT] se_deeprec.F90       [SEBOMD] [F77] [OPT] se_denful.F       [SEBOMD] [F77] [OPT] se_densub.F       [SEBOMD] [F77] [OPT] se_diag.F       [SEBOMD] [F77] [OPT] se_diagp.F       [SEBOMD] [F77] [OPT] se_diat.F       [SEBOMD] [F77] [OPT] se_dihedrpbc.F       [SEBOMD] [F77] [OPT] se_dipole.F       [SEBOMD] [F77] [OPT] se_dmxinter.F       [SEBOMD] [F77] [OPT] se_doferm.F       [SEBOMD] [F77] [OPT] se_doscf.F       [SEBOMD] [F77] [OPT] se_edriver.F       [SEBOMD] [F77] [OPT] se_elecsr.F       [SEBOMD] [F77] [OPT] se_energy.F       [SEBOMD] [F77] [OPT] se_escf.F       [SEBOMD] [F77] [OPT] se_esqr.F       [SEBOMD] [F77] [OPT] se_etimer.F       [SEBOMD] [F77] [OPT] se_fock.F       [SEBOMD] [F77] [OPT] se_fockpme.F       [SEBOMD] [F77] [OPT] se_fourier.F       [SEBOMD] [F77] [OPT] se_fshift.F       [SEBOMD] [F77] [OPT] se_gcart.F       [SEBOMD] [F77] [OPT] se_gdiat.F       [SEBOMD] [F77] [OPT] se_gensub.F       [SEBOMD] [F77] [OPT] se_getpar.F       [SEBOMD] [F77] [OPT] se_glbpnt.F       [SEBOMD] [F77] [OPT] se_goverlp.F       [SEBOMD] [F77] [OPT] se_grepul.F       [SEBOMD] [F77] [OPT] se_ijpair.F       [SEBOMD] [F90] [OPT] se_info_from_sander.F90       [SEBOMD] [F77] [OPT] se_initp.F       [SEBOMD] [F77] [OPT] se_mosub.F       [SEBOMD] [F77] [OPT] se_opnfil.F       [SEBOMD] [F77] [OPT] se_overlp.F       [SEBOMD] [F77] [OPT] se_pbcgcres.F       [SEBOMD] [F77] [OPT] se_pbcxyz.F       [SEBOMD] [F77] [OPT] se_pme_calcb.F       [SEBOMD] [F77] [OPT] se_pme_calcchg.F       [SEBOMD] [F77] [OPT] se_pme_calccm1.F       [SEBOMD] [F77] [OPT] se_pme_calcq.F       [SEBOMD] [F77] [OPT] se_pme_calctheta.F       [SEBOMD] [F77] [OPT] se_pme_derec.F       [SEBOMD] [F77] [OPT] se_pme_direct2.F       [SEBOMD] [F77] [OPT] se_pme_qm_direct.F       [SEBOMD] [F77] [OPT] se_pme_qm_recip.F       [SEBOMD] [F77] [OPT] se_pme_recip.F       [SEBOMD] [F77] [OPT] se_pme_setup.F       [SEBOMD] [F77] [OPT] se_pmix.F       [SEBOMD] [F77] [OPT] se_rdall.F       [SEBOMD] [F77] [OPT] se_rdelem.F       [SEBOMD] [F77] [OPT] se_rdnum.F       [SEBOMD] [F77] [OPT] se_rdtail.F       [SEBOMD] [F77] [OPT] se_repul.F       [SEBOMD] [F77] [OPT] se_resclustsub.F       [SEBOMD] [F77] [OPT] se_mpi_allreduce.F       [SEBOMD] [F90] [OPT] se_mpi_vars.F90       [SEBOMD] [F77] [OPT] sebomd.F       [SEBOMD] [F90] [OPT] se_corrections_info_from_sander.F90       [SEBOMD] [F77] [OPT] se_corrections.F       [SEBOMD] [F90] [OPT] se_init.F90       [SEBOMD] [F90] [OPT] se_switch.F90       [SEBOMD] [F77] [OPT] se_setbox.F       [SEBOMD] [F77] [OPT] se_setunit.F       [SEBOMD] [F77] [OPT] se_setup.F       [SEBOMD] [F90] [OPT] se_write_charges.F90       [SEBOMD] [F77] [OPT] se_sproc.F       [SEBOMD] [F77] [OPT] se_whatis.F       [SEBOMD] [F77] [OPT] se_wrtdmx.F       [SEBOMD] [AR] sebomd.a ar: creating sebomd.a make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sebomd' [SANDER]  FC lsc_init.F90 [SANDER]  FC lsc_xp.F90 test -e dispersion_cavity.o || touch dispersion_cavity.o test -e pbtimer_module.o || touch pbtimer_module.o [SANDER]  FC force.F90 cd ../lib && make sys.a make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' make[3]: 'sys.a' is up to date. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' cd ../blas && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' cd ../lapack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' cd ../arpack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' [SANDER]  FC nfe-read-pca.F90 if [ -n "-DRISMSANDER" ]; then \         cd ../rism && make librism; \ fi make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' [RISM] FC solvmdl_c.F90 [RISM] FC rism1d_potential_c.F90 [RISM] FC rism1d_kh_c.F90 [RISM] FC rism1d_hnc_c.F90 [RISM] FC rism1d_py_c.F90 [RISM] FC rism1d_mv0_c.F90 [RISM] FC rism1d_psen_c.F90 [RISM] FC rism1d_nub_c.F90 [RISM] FC rism1d_polyt_c.F90 [RISM] FC rism1d_devb_c.F90 [RISM] FC rism1d_closure_c.F90 [RISM] FC rism1d_c.F90 [RISM] FC pubfft.F90 [RISM] FC erfcfun.F90 [RISM] FC blend.F90 [RISM] FC getopts_c.F90 [RISM] FC dsi.F90 [RISM] FC dcpval.F90 [RISM] FC dqagie.F90 [RISM] FC dqelg.F90 [RISM] FC dqk15i.F90 [RISM] FC dqpsrt.F90 [RISM] FC d1mach.F90 [RISM] FC i1mach.F90 [RISM] FC xermsg.F90 [RISM] FC xerprn.F90 [RISM] FC xersve.F90 [RISM] FC xerhlt.F90 [RISM] FC xercnt.F90 [RISM] FC xgetua.F90 [RISM] FC fdump.F90 [RISM] FC j4save.F90 [RISM]  AR librism ar: creating /mnt/c/Users/Alen/Documents/Research/amber18//lib/librism.a make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' [SANDER]  CC Plumed.c [SANDER]  FC /mnt/c/Users/Alen/Documents/Research/amber18//bin/sander [SANDER]  FC nose_hoover_init_LES.F90 [SANDER]  FC mdfil.F90 [SANDER]  FC nonbond_list.F90 nonbond_list.F90:692:72:                         nghbptr, nghtran, tranvec, belly, ibelly, balance, &                                                                         1 Warning: Unused dummy argument ‘balance’ at (1) [-Wunused-dummy-argument] nonbond_list.F90:693:32:                         gridpairs, periodic, nogrdptrs)                                 1 Warning: Unused dummy argument ‘gridpairs’ at (1) [-Wunused-dummy-argument] [SANDER]  FC remd.F90 [SANDER]  FC egb.F90 [SANDER]  FC nmr.F90 [SANDER]  FC evb_pimd_init.F90 [SANDER]  FC multisander.F90 [SANDER]  FC bintraj.F90 bintraj.F90:123:65:                          .false., title, vel_ncid, vel_TimeVarID, ierr, &                                                                  1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coordvid’ and INTENT(OUT) argument ‘frcvid’ at (1) bintraj.F90:133:27:                             ierr, VelocVarID, vel_TimeVarID, &                            1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coordvid’ and INTENT(OUT) argument ‘celllengthvid’ at (1) bintraj.F90:159:64:                          .true., title, frc_ncid, frc_TimeVarID, ierr, &                                                                 1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coordvid’ and INTENT(OUT) argument ‘celllengthvid’ at (1) bintraj.F90:13:47:     integer :: remd_valuesVarID, remd_typesVarID, Cell_lengthVarID                                                1 Warning: Unused PRIVATE module variable ‘remd_typesvarid’ declared at (1) [-Wunused-value] [SANDER]  FC lmod.F90 [SANDER]  FC qm2_extern_module.F90 [SANDER]  FC ew_recip.F90 [SANDER]  FC sander.F90 [SANDER]  FC force.F90 [SANDER]  FC rdparm.F90 [SANDER]  FC mdread.F90 [SANDER]  FC locmem.F90 [SANDER]  FC md_scheme.F90 md_scheme.F90:65:22:      integer :: i, j, k, idof                       1 Warning: Unused variable ‘k’ declared at (1) [-Wunused-variable] [SANDER]  FC runmd.F90 runmd.F90:4334:1:    write(fh_ek, '(I10,2(1x,F14.4))') nstep, ekph, ekph*onefac(1)  1 Warning: Nonconforming tab character at (1) [-Wtabs] runmd.F90:4775:1:    ekhf = ekhf / tspan  1 Warning: Nonconforming tab character at (1) [-Wtabs] runmd.F90:4776:1:    ekhf2 = ekhf2/tspan - ekhf*ekhf  1 Warning: Nonconforming tab character at (1) [-Wtabs] runmd.F90:4777:1:    ekhf2 = sqrt(ekhf2)  1 Warning: Nonconforming tab character at (1) [-Wtabs] runmd.F90:375:41:    _REAL_ :: x_centroid(3,natom) ! for PIMD                                          1 Warning: Unused variable ‘x_centroid’ declared at (1) [-Wunused-variable] runmd.F90:81:6:    use full_pimd_vars, only: totener,totenert,totenert2,mybeadid,xall       1 Warning: Unused module variable ‘xall’ which has been explicitly imported at (1) [-Wunused-variable] runmd.F90:227:0:    _REAL_ boltz, etlci, davalev, clfs, tkik, rndbim(3)  ^ Warning: ‘boltz’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC degcnt.F90 [SANDER]  FC parallel.F90 [SANDER]  FC ene.F90 [SANDER]  FC dynlib.F90 [SANDER]  FC ew_force.F90 [SANDER]  FC binrestart.F90 binrestart.F90:17:48:     integer, save :: repidx_var_id, crdidx_var_id                                                 1 Warning: Unused PRIVATE module variable ‘crdidx_var_id’ declared at (1) [-Wunused-value] binrestart.F90:15:59:     integer, save :: remd_indices_var_id, remd_groups_var_id                                                            1 Warning: Unused PRIVATE module variable ‘remd_groups_var_id’ declared at (1) [-Wunused-value] binrestart.F90:15:39:     integer, save :: remd_indices_var_id, remd_groups_var_id                                        1 Warning: Unused PRIVATE module variable ‘remd_indices_var_id’ declared at (1) [-Wunused-value] binrestart.F90:17:33:     integer, save :: repidx_var_id, crdidx_var_id                                  1 Warning: Unused PRIVATE module variable ‘repidx_var_id’ declared at (1) [-Wunused-value] binrestart.F90:345:44:  subroutine read_nc_remd_types(filename,title,remd_types,remd_dimension)                                             1 Warning: Dummy argument ‘title’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument] binrestart.F90:308:48:  subroutine read_nc_remd_dimension(filename,title,remd_dimension)                                                 1 Warning: Dummy argument ‘title’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument] [SANDER]  FC ew_setup.F90 [SANDER]  FC short_ene.F90 short_ene.F90:1543:61:                           eedmeth, mpoltype, dxdr, eedvir, cn3, cn4, cn5)                                                              1 Warning: Unused dummy argument ‘cn3’ at (1) [-Wunused-dummy-argument] short_ene.F90:1543:66:                           eedmeth, mpoltype, dxdr, eedvir, cn3, cn4, cn5)                                                                   1 Warning: Unused dummy argument ‘cn4’ at (1) [-Wunused-dummy-argument] short_ene.F90:1543:71:                           eedmeth, mpoltype, dxdr, eedvir, cn3, cn4, cn5)                                                                        1 Warning: Unused dummy argument ‘cn5’ at (1) [-Wunused-dummy-argument] short_ene.F90:246:57:                       cache_z, cache_r2, cache_bckptr, cn3, cn4, cn5)                                                          1 Warning: Unused dummy argument ‘cn3’ at (1) [-Wunused-dummy-argument] short_ene.F90:246:62:                       cache_z, cache_r2, cache_bckptr, cn3, cn4, cn5)                                                               1 Warning: Unused dummy argument ‘cn4’ at (1) [-Wunused-dummy-argument] short_ene.F90:246:67:                       cache_z, cache_r2, cache_bckptr, cn3, cn4, cn5)                                                                    1 Warning: Unused dummy argument ‘cn5’ at (1) [-Wunused-dummy-argument] short_ene.F90:1935:0:        b3 = b3 * lambda7  ^ Warning: ‘lambda7’ may be used uninitialized in this function [-Wmaybe-uninitialized] short_ene.F90:1934:0:        b2 = b2 * lambda5  ^ Warning: ‘lambda5’ may be used uninitialized in this function [-Wmaybe-uninitialized] short_ene.F90:1933:0:        b1 = b1 * lambda3  ^ Warning: ‘lambda3’ may be used uninitialized in this function [-Wmaybe-uninitialized] ew_directe.h:80:0:     dfz = delz*df  ^ Warning: ‘df’ may be used uninitialized in this function [-Wmaybe-uninitialized] short_ene.F90:302:0:    _REAL_ delx,dely,delz,delr, delr2, cgi, cgj, delr2inv, r6, f6, f12, df, &  ^ note: ‘df’ was declared here [SANDER]  FC extra_pts.F90 extra_pts.F90:1792:0:        c3 = c3 * lambda7  ^ Warning: ‘lambda7’ may be used uninitialized in this function [-Wmaybe-uninitialized] extra_pts.F90:1791:0:        c2 = c2 * lambda5  ^ Warning: ‘lambda5’ may be used uninitialized in this function [-Wmaybe-uninitialized] extra_pts.F90:1790:0:        c1 = c1 * lambda3  ^ Warning: ‘lambda3’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC getcor.F90 getcor.F90:45:52:     integer, dimension(:), allocatable :: lremd_types                                                     1 Warning: Unused variable ‘lremd_types’ declared at (1) [-Wunused-variable] [SANDER]  FC mdwrit.F90 mdwrit.F90:8:63:  subroutine mdwrit(nstep,nr,ntxo,ntb,x,v,tt,temp0, solvph, solve)                                                                1 Warning: Unused dummy argument ‘solve’ at (1) [-Wunused-dummy-argument] mdwrit.F90:8:56:  subroutine mdwrit(nstep,nr,ntxo,ntb,x,v,tt,temp0, solvph, solve)                                                         1 Warning: Unused dummy argument ‘solvph’ at (1) [-Wunused-dummy-argument] [SANDER]  FC ew_box.F90 [SANDER]  FC minrit.F90 [SANDER]  FC set.F90 set.F90:281:47:       call read_nc_restart(filename,title1,1,nr,xc,xc,lremd_values,remd_dimension,restarttime)                                                1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coords’ and INTENT(OUT) argument ‘velo’ at (1) [SANDER]  FC qm_mm.F90 [SANDER]  FC pimd_force.F90 [SANDER]  FC pimd_init.F90 [SANDER]  FC cmd_matrix.F90 [SANDER]  FC /mnt/c/Users/Alen/Documents/Research/amber18//bin/sander.LES [SANDER]  FC ambmask.F90 [SANDER]  FC /mnt/c/Users/Alen/Documents/Research/amber18//bin/ambmask [SANDER]  FC charmm.F90 [SANDER]  FC nonbond_list.F90 nonbond_list.F90:692:72:                         nghbptr, nghtran, tranvec, belly, ibelly, balance, &                                                                         1 Warning: Unused dummy argument ‘balance’ at (1) [-Wunused-dummy-argument] nonbond_list.F90:693:32:                         gridpairs, periodic, nogrdptrs)                                 1 Warning: Unused dummy argument ‘gridpairs’ at (1) [-Wunused-dummy-argument] [SANDER]  FC rdparm.F90 [SANDER]  FC prmtop_type.F90 [SANDER]  FC cpparm.F90 [SANDER]  FC fastwt.F90 fastwt.F90:924:10:        iout)           1 Warning: Unused dummy argument ‘iout’ at (1) [-Wunused-dummy-argument] [SANDER]  FC set.F90 set.F90:281:47:       call read_nc_restart(filename,title1,1,nr,xc,xc,lremd_values,remd_dimension,restarttime)                                                1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coords’ and INTENT(OUT) argument ‘velo’ at (1) [SANDER]  FC dynlib.F90 [SANDER]  FC ew_setup.F90 [SANDER]  FC ew_box.F90 [SANDER]  FC debug.F90 [SANDER]  FC new_time.F90 [SANDER]  FC extra_pts.F90 extra_pts.F90:1792:0:        c3 = c3 * lambda7  ^ Warning: ‘lambda7’ may be used uninitialized in this function [-Wmaybe-uninitialized] extra_pts.F90:1791:0:        c2 = c2 * lambda5  ^ Warning: ‘lambda5’ may be used uninitialized in this function [-Wmaybe-uninitialized] extra_pts.F90:1790:0:        c1 = c1 * lambda3  ^ Warning: ‘lambda3’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC interface.F90 mdread2.F90:95:19:     logical newstyle                    1 Warning: Unused variable ‘newstyle’ declared at (1) [-Wunused-variable] mdread1.F90:112:37:     character(len=8) periodicPotential                                      1 Warning: Unused variable ‘periodicpotential’ declared at (1) [-Wunused-variable] mdread1.F90:62:7:     use sander_rism_interface, only: rismprm, rism_getPeriodicPotential        1 Warning: Unused module variable ‘rismprm’ which has been explicitly imported at (1) [-Wunused-variable] [SANDER]  FC qm_mm.F90 [SANDER]  CC fftw3_dummy.c [SANDER]  FC /mnt/c/Users/Alen/Documents/Research/amber18//lib/libsander.so [SANDER]  FC cpparm.F90 [SANDER]  FC nonbond_list.F90 nonbond_list.F90:692:72:                         nghbptr, nghtran, tranvec, belly, ibelly, balance, &                                                                         1 Warning: Unused dummy argument ‘balance’ at (1) [-Wunused-dummy-argument] nonbond_list.F90:693:32:                         gridpairs, periodic, nogrdptrs)                                 1 Warning: Unused dummy argument ‘gridpairs’ at (1) [-Wunused-dummy-argument] [SANDER]  FC rdparm.F90 [SANDER]  FC dynlib.F90 [SANDER]  FC ew_setup.F90 [SANDER]  FC extra_pts.F90 extra_pts.F90:1792:0:        c3 = c3 * lambda7  ^ Warning: ‘lambda7’ may be used uninitialized in this function [-Wmaybe-uninitialized] extra_pts.F90:1791:0:        c2 = c2 * lambda5  ^ Warning: ‘lambda5’ may be used uninitialized in this function [-Wmaybe-uninitialized] extra_pts.F90:1790:0:        c1 = c1 * lambda3  ^ Warning: ‘lambda3’ may be used uninitialized in this function [-Wmaybe-uninitialized] [SANDER]  FC ew_box.F90 [SANDER]  FC set.F90 set.F90:281:47:       call read_nc_restart(filename,title1,1,nr,xc,xc,lremd_values,remd_dimension,restarttime)                                                1 Warning: Same actual argument associated with INTENT(OUT) argument ‘coords’ and INTENT(OUT) argument ‘velo’ at (1) [SANDER]  FC qm_mm.F90 [SANDER]  FC interface.F90 mdread1.F90:112:37:     character(len=8) periodicPotential                                      1 Warning: Unused variable ‘periodicpotential’ declared at (1) [-Wunused-variable] mdread1.F90:62:7:     use sander_rism_interface, only: rismprm, rism_getPeriodicPotential        1 Warning: Unused module variable ‘rismprm’ which has been explicitly imported at (1) [-Wunused-variable] [SANDER]  FC /mnt/c/Users/Alen/Documents/Research/amber18//lib/libsanderles.so cd ../../../test/amd             && ln -s -f ../../bin/sander . cd ../../../test/chamber         && ln -s -f ../../bin/sander . cd ../../../test/nmropt          && ln -s -f ../../bin/sander . cd ../../../test/qmmm2           && ln -s -f ../../bin/sander . cd ../../../test/qmmm_DFTB       && ln -s -f ../../bin/sander . cd ../../../test/abfqmmm         && ln -s -f ../../bin/sander . cd ../../../test/rism3d          && ln -s -f ../../bin/sander . cd ../../../test/sander_pbsa_frc && ln -s -f ../../bin/sander . cd ../../../test/rism3d          && ln -s -f ../../bin/sander . make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sander' (cd nmr_aux && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux' cd prepare_input && make clean && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux/prepare_input' /bin/rm -f *.o make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux/prepare_input' make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux/prepare_input' [NMR_AUX]  CC makeDIST_RST.c [NMR_AUX]  CC makeDIST_RST [NMR_AUX]  CC makeANG_RST.c [NMR_AUX]  CC makeANG_RST [NMR_AUX]  CC nef_to_RST.c [NMR_AUX]  CC nef_to_RST make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux/prepare_input' cd fantasian && make clean && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux/fantasian' /bin/rm -f *.o  fantasian make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux/fantasian' make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux/fantasian' gfortran -DBINTRAJ -DEMIL    -c -O0 -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o fantasian.o fantasian.F cd ../../lib && make mexit.o make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' [LIB]  FC mexit.F make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' gfortran -DBINTRAJ -DEMIL    -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o fantasian fantasian.o ../../lib/random.o ../../lib/mexit.o mv fantasian /mnt/c/Users/Alen/Documents/Research/amber18//bin make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux/fantasian' cp senergy sviol sviol2 /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmr_aux' (cd nmode && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmode' [NMODE]  FC decomp.F90 [NMODE]  FC nmode.F90 nmode.F90:240:28:           call writlw(lworki,x(mcscr+4*ns3))                             1 Warning: Type mismatch in argument ‘iw’ at (1); passed REAL(8) to INTEGER(4) [NMODE]  FC alloc.F90 [NMODE]  FC angl.F90 [NMODE]  FC assert.F90 [NMODE]  FC bond.F90 [NMODE]  FC bresna.F90 [NMODE]  FC cdiv.F90 [NMODE]  FC chck.F90 [NMODE]  FC chdir.F90 [NMODE]  FC chlamba.F90 [NMODE]  FC debug.F90 [NMODE]  FC difang.F90 [NMODE]  FC difbon.F90 [NMODE]  FC dihdup.F90 [NMODE]  FC dihed.F90 [NMODE]  FC dirch.F90 [NMODE]  FC dsort.F90 [NMODE]  FC eigout.F90 [NMODE]  FC ephi.F90 [NMODE]  FC eprnt.F90 [NMODE]  FC errstp.F90 [NMODE]  FC findl.F90 [NMODE]  FC forces.F90 [NMODE]  FC getcor.F90 [NMODE]  FC getf.F90 [NMODE]  FC getm.F90 [NMODE]  FC getref.F90 [NMODE]  FC grdmax.F90 [NMODE]  FC level.F90 [NMODE]  FC lmdout.F90 [NMODE]  FC lmode.F90 [NMODE]  FC makel.F90 [NMODE]  FC movecm.F90 [NMODE]  FC mweight.F90 [NMODE]  FC mweit.F90 [NMODE]  FC new_stuff.F90 [NMODE]  FC nmdfil.F90 [NMODE]  FC nonbon.F90 [NMODE]  FC nonbon1.F90 [NMODE]  FC norm.F90 [NMODE]  FC norml.F90 [NMODE]  FC nrch.F90 [NMODE]  FC oseen.F90 [NMODE]  FC pairr.F90 [NMODE]  FC pairw.F90 [NMODE]  FC percon.F90 [NMODE]  FC pload.F90 [NMODE]  FC putvar.F90 [NMODE]  FC rdinp.F90 [NMODE]  FC rdparm.F90 [NMODE]  FC remrot.F90 [NMODE]  FC resdis.F90 [NMODE]  FC savec.F90 [NMODE]  FC savei.F90 [NMODE]  FC savet.F90 [NMODE]  FC setang.F90 [NMODE]  FC setatm.F90 [NMODE]  FC setbon.F90 [NMODE]  FC setcor.F90 [NMODE]  FC setdih.F90 [NMODE]  FC setgam.F90 [NMODE]  FC setgr.F90 [NMODE]  FC setvar.F90 [NMODE]  FC spsort.F90 [NMODE]  FC thermo.F90 [NMODE]  FC timit.F90 [NMODE]  FC traco.F90 [NMODE]  FC tsearch.F90 [NMODE]  FC tstate.F90 [NMODE]  FC xconst.F90 [NMODE]  FC zerout.F90 [NMODE]  FC zxcgr.F90 [NMODE]  FC mexit.F90 cd ../lib && make rfree.o   matinv.o nxtsec.o amopen.o rgroup.o make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' [LIB]  FC rfree.F [LIB]  FC matinv.F make[3]: 'nxtsec.o' is up to date. [LIB]  FC amopen.F [LIB]  FC rgroup.F make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' cd ../lib && make sys.a make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' make[3]: 'sys.a' is up to date. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' cd ../blas && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/blas' cd ../lapack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lapack' cd ../arpack && make install make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/arpack' [NMODE]  FC /mnt/c/Users/Alen/Documents/Research/amber18//bin/nmode [NMODE]  FC lmanal.F90 [NMODE]  FC distr.F90 [NMODE]  FC lmfil.F90 [NMODE]  FC count.F90 [NMODE]  FC fluct.F90 [NMODE]  FC lmdin.F90 [NMODE]  FC fileio.F90 [NMODE]  FC corfl.F90 [NMODE]  FC corfv.F90 [NMODE]  FC rdparml.F90 [NMODE]  CC ../lib/binpos.c [NMODE]  FC /mnt/c/Users/Alen/Documents/Research/amber18//bin/lmanal make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nmode' make build_cpptraj libcpptraj make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src' (cd cpptraj && make install) make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj' cd src && make install make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src' CXX SpaceGroup.cpp CXX Action.cpp CXX ActionFrameCounter.cpp CXX ActionList.cpp CXX Action_Align.cpp CXX Action_Angle.cpp CXX Action_AreaPerMol.cpp CXX Action_AtomMap.cpp CXX Action_AtomicCorr.cpp CXX Action_AtomicFluct.cpp CXX Action_AutoImage.cpp CXX Action_Average.cpp CXX Action_Bounds.cpp CXX Action_Box.cpp CXX Action_Center.cpp CXX Action_Channel.cpp CXX Action_CheckChirality.cpp CXX Action_CheckStructure.cpp CXX Action_Closest.cpp CXX Action_ClusterDihedral.cpp CXX Action_Contacts.cpp CXX Action_CreateCrd.cpp CXX Action_CreateReservoir.cpp CXX Action_DNAionTracker.cpp CXX Action_DSSP.cpp CXX Action_Density.cpp CXX Action_Diffusion.cpp CXX Action_Dihedral.cpp CXX Action_Dipole.cpp CXX Action_Distance.cpp CXX Action_DistRmsd.cpp CXX Action_Energy.cpp CXX Action_FilterByData.cpp CXX Action_FixAtomOrder.cpp CXX Action_FixImagedBonds.cpp CXX Action_GIST.cpp CXX Action_Grid.cpp CXX Action_GridFreeEnergy.cpp CXX Action_HydrogenBond.cpp CXX Action_Image.cpp CXX Action_InfraredSpectrum.cpp CXX Action_Jcoupling.cpp CXX Action_LESsplit.cpp CXX Action_LIE.cpp CXX Action_LipidOrder.cpp CXX Action_MakeStructure.cpp CXX Action_Mask.cpp CXX Action_Matrix.cpp CXX Action_MinImage.cpp CXX Action_Molsurf.cpp CXX Action_MultiDihedral.cpp CXX Action_MultiVector.cpp CXX Action_NAstruct.cpp CXX Action_NativeContacts.cpp CXX Action_NMRrst.cpp CXX Action_OrderParameter.cpp CXX Action_Outtraj.cpp CXX Action_PairDist.cpp CXX Action_Pairwise.cpp CXX Action_Principal.cpp CXX Action_Projection.cpp CXX Action_Pucker.cpp CXX Action_Radgyr.cpp CXX Action_Radial.cpp CXX Action_RandomizeIons.cpp CXX Action_Remap.cpp CXX Action_ReplicateCell.cpp CXX Action_Rmsd.cpp CXX Action_Rotate.cpp CXX Action_RunningAvg.cpp CXX Action_STFC_Diffusion.cpp CXX Action_Scale.cpp CXX Action_SetVelocity.cpp CXX Action_Spam.cpp CXX Action_Strip.cpp CXX Action_Surf.cpp CXX Action_SymmetricRmsd.cpp CXX Action_Temperature.cpp CXX Action_Translate.cpp CXX Action_Unstrip.cpp CXX Action_Unwrap.cpp CXX Action_Vector.cpp CXX Action_VelocityAutoCorr.cpp CXX Action_Volmap.cpp CXX Action_Volume.cpp CXX Action_Watershell.cpp CXX Action_XtalSymm.cpp CXX AnalysisList.cpp CXX Analysis_AmdBias.cpp CXX Analysis_AutoCorr.cpp CXX Analysis_Average.cpp CXX Analysis_Clustering.cpp CXX Analysis_Corr.cpp CXX Analysis_ConstantPHStats.cpp CXX Analysis_CrankShaft.cpp CXX Analysis_CrdFluct.cpp CXX Analysis_CrossCorr.cpp CXX Analysis_CurveFit.cpp CXX Analysis_Divergence.cpp CXX Analysis_FFT.cpp CXX Analysis_HausdorffDistance.cpp CXX Analysis_Hist.cpp CXX Analysis_Integrate.cpp CXX Analysis_IRED.cpp CXX Analysis_KDE.cpp CXX Analysis_Lifetime.cpp CXX Analysis_LowestCurve.cpp CXX Analysis_Matrix.cpp CXX Analysis_MeltCurve.cpp CXX Analysis_Modes.cpp CXX Analysis_Multicurve.cpp CXX Analysis_MultiHist.cpp CXX Analysis_Overlap.cpp CXX Analysis_PhiPsi.cpp CXX Analysis_Regression.cpp CXX Analysis_RemLog.cpp CXX Analysis_Rms2d.cpp CXX Analysis_RmsAvgCorr.cpp CXX Analysis_Rotdif.cpp CXX Analysis_RunningAvg.cpp CXX Analysis_Spline.cpp CXX Analysis_State.cpp CXX Analysis_Statistics.cpp CXX Analysis_TI.cpp CXX Analysis_Timecorr.cpp CXX Analysis_VectorMath.cpp CXX Analysis_Wavelet.cpp CXX ArgList.cpp CXX Array1D.cpp CXX AssociatedData.cpp CXX Atom.cpp CXX AtomMap.cpp CXX AtomMask.cpp CXX AtomType.cpp CXX AtomTypeArray.cpp CXX AxisType.cpp CXX BondSearch.cpp CXX Box.cpp CXX BufferedFrame.cpp CXX BufferedLine.cpp CXX ByteRoutines.cpp CXX CharMask.cpp CXX CIFfile.cpp CXX ClusterDist.cpp CXX ClusterList.cpp CXX ClusterMap.cpp CXX ClusterMatrix.cpp CXX ClusterNode.cpp CXX ClusterSieve.cpp CXX Cluster_DBSCAN.cpp CXX Cluster_DPeaks.cpp CXX Cluster_HierAgglo.cpp CXX Cluster_Kmeans.cpp CXX Cluster_ReadInfo.cpp CXX Cmd.cpp CXX CmdInput.cpp CXX CmdList.cpp CXX ComplexArray.cpp CXX Constraints.cpp CXX Control.cpp CXX CoordinateInfo.cpp CXX Corr.cpp CXX Cph.cpp CXX CpptrajFile.cpp CXX CpptrajState.cpp CXX CpptrajStdio.cpp CXX CurveFit.cpp CXX DataFile.cpp CXX DataFileList.cpp CXX DataIO.cpp CXX DataIO_CCP4.cpp CXX DataIO_CharmmFastRep.cpp CXX DataIO_CharmmOutput.cpp CXX DataIO_CharmmRepLog.cpp CXX DataIO_CharmmRtfPrm.cpp CXX DataIO_Cmatrix.cpp CXX DataIO_Cpout.cpp CXX DataIO_Evecs.cpp CXX DataIO_Gnuplot.cpp CXX DataIO_Grace.cpp CXX DataIO_OpenDx.cpp CXX DataIO_Mdout.cpp CXX DataIO_NC_Cmatrix.cpp CXX DataIO_RemLog.cpp CXX DataIO_Std.cpp CXX DataIO_VecTraj.cpp CXX DataIO_Xplor.cpp CXX DataIO_XVG.cpp CXX DataSet.cpp CXX DataSetList.cpp CXX DataSet_1D.cpp CXX DataSet_3D.cpp CXX DataSet_Cmatrix.cpp CXX DataSet_Cmatrix_DISK.cpp CXX DataSet_Cmatrix_MEM.cpp CXX DataSet_Cmatrix_NOMEM.cpp CXX DataSet_Coords.cpp CXX DataSet_Coords_CRD.cpp CXX DataSet_Coords_REF.cpp CXX DataSet_Coords_TRJ.cpp CXX DataSet_GridDbl.cpp CXX DataSet_GridFlt.cpp CXX DataSet_Mat3x3.cpp CXX DataSet_MatrixDbl.cpp CXX DataSet_MatrixFlt.cpp CXX DataSet_Mesh.cpp CXX DataSet_Modes.cpp CXX DataSet_Parameters.cpp CXX DataSet_pH.cpp CXX DataSet_PHREMD_Explicit.cpp CXX DataSet_PHREMD_Implicit.cpp CXX DataSet_RemLog.cpp CXX DataSet_Topology.cpp CXX DataSet_Vector.cpp CXX DataSet_double.cpp CXX DataSet_float.cpp CXX DataSet_integer_disk.cpp CXX DataSet_integer_mem.cpp CXX DataSet_string.cpp CXX Deprecated.cpp CXX DihedralSearch.cpp CXX DistRoutines.cpp CXX Energy.cpp CXX EnsembleIn.cpp CXX EnsembleIn_Multi.cpp CXX EnsembleIn_Single.cpp CXX EnsembleNavigator.cpp CXX EnsembleOut.cpp CXX EnsembleOut_Multi.cpp CXX EnsembleOut_Single.cpp CXX EnsembleOutList.cpp CXX Ewald.cpp CXX Ewald_ParticleMesh.cpp In file included from Ewald_ParticleMesh.h:5:0,                  from Ewald_ParticleMesh.cpp:4: helpme_standalone.h: In instantiation of ‘void helpme::BSpline::update(short int, Real, short int, short int) [with Real = double]’: helpme_standalone.h:2546:13:   required from ‘void helpme::PMEInstance::filterAtomsAndBuildSplineCache(int, const RealMat&) [with Real = double; helpme::PMEInstance::RealMat = helpme::Matrix]’ helpme_standalone.h:4205:39:   required from ‘Real helpme::PMEInstance::computeERec(int, const RealMat&, const RealMat&) [with Real = double; helpme::PMEInstance::RealMat = helpme::Matrix]’ Ewald_ParticleMesh.cpp:191:63:   required from here helpme_standalone.h:2159:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]          if (splines_.nRows() < derivativeLevel + 1 || splines_.nCols() != order)                               ^ helpme_standalone.h:2159:72: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]          if (splines_.nRows() < derivativeLevel + 1 || splines_.nCols() != order)                                                                         ^ CXX Ewald_Regular.cpp CXX Exec_Analyze.cpp CXX Exec_Calc.cpp CXX Exec_CatCrd.cpp CXX Exec_Change.cpp CXX Exec_ClusterMap.cpp CXX Exec_CombineCoords.cpp CXX Exec_Commands.cpp CXX Exec_CompareTop.cpp CXX Exec_CrdAction.cpp CXX Exec_CrdOut.cpp CXX Exec_CreateSet.cpp CXX Exec_DataFile.cpp CXX Exec_DataFilter.cpp CXX Exec_DataSetCmd.cpp CXX Exec_GenerateAmberRst.cpp CXX Exec_Help.cpp CXX Exec_LoadCrd.cpp CXX Exec_LoadTraj.cpp CXX Exec_ParallelAnalysis.cpp CXX Exec_ParmBox.cpp CXX Exec_ParmSolvent.cpp CXX Exec_ParmStrip.cpp CXX Exec_ParmWrite.cpp CXX Exec_PermuteDihedrals.cpp CXX Exec_Precision.cpp CXX Exec_PrintData.cpp CXX Exec_ReadData.cpp CXX Exec_ReadEnsembleData.cpp CXX Exec_ReadInput.cpp CXX Exec_RotateDihedral.cpp CXX Exec_RunAnalysis.cpp CXX Exec_ScaleDihedralK.cpp CXX Exec_SequenceAlign.cpp CXX Exec_SortEnsembleData.cpp CXX Exec_SplitCoords.cpp CXX Exec_System.cpp CXX Exec_Top.cpp CXX Exec_Traj.cpp CXX Exec_UpdateParameters.cpp CXX Exec_ViewRst.cpp CXX File_TempName.cpp CXX FileIO_Bzip2.cpp CXX FileIO_Gzip.cpp CXX FileIO_Mpi.cpp CXX FileIO_MpiShared.cpp CXX FileIO_Std.cpp CXX FileName.cpp CXX FileTypes.cpp CXX Frame.cpp CXX GridAction.cpp CXX HistBin.cpp CXX Hungarian.cpp CXX ImageRoutines.cpp CXX InputTrajCommon.cpp CXX KDE.cpp CXX MapAtom.cpp CXX MaskArray.cpp CXX MaskToken.cpp CXX Matrix_3x3.cpp CXX MetaData.cpp CXX Mol.cpp CXX Mol2File.cpp CXX NameType.cpp CXX NC_Cmatrix.cpp CXX NC_Routines.cpp CXX NetcdfFile.cpp CXX OutputTrajCommon.cpp CXX PDBfile.cpp CXX PairList.cpp CXX Parallel.cpp CXX ParallelNetcdf.cpp CXX ParmFile.cpp CXX Parm_Amber.cpp CXX Parm_CharmmPsf.cpp CXX Parm_CIF.cpp CXX Parm_Gromacs.cpp CXX Parm_Mol2.cpp CXX Parm_PDB.cpp CXX Parm_SDF.cpp CXX Parm_Tinker.cpp CXX ProgressBar.cpp CXX ProgressTimer.cpp CXX PubFFT.cpp CXX Random.cpp CXX Range.cpp CXX RPNcalc.cpp CXX ReferenceAction.cpp CXX RemdReservoirNC.cpp CXX Residue.cpp CXX SDFfile.cpp CXX SimplexMin.cpp CXX Spline.cpp CXX StringRoutines.cpp CXX StructureCheck.cpp CXX StructureMapper.cpp CXX SymmetricRmsdCalc.cpp CXX TextFormat.cpp CXX Timer.cpp CXX TinkerFile.cpp CXX TopInfo.cpp CXX Topology.cpp CXX TorsionRoutines.cpp CXX Traj_AmberCoord.cpp CXX Traj_AmberNetcdf.cpp CXX Traj_AmberRestart.cpp CXX Traj_AmberRestartNC.cpp CXX Traj_Binpos.cpp CXX Traj_CharmmCor.cpp CXX Traj_CharmmDcd.cpp CXX Traj_CharmmRestart.cpp CXX Traj_CIF.cpp CXX Traj_Conflib.cpp CXX Traj_GmxTrX.cpp CXX Traj_GmxXtc.cpp CXX Traj_Gro.cpp CXX Traj_Mol2File.cpp CXX Traj_NcEnsemble.cpp CXX Traj_PDBfile.cpp CXX Traj_SDF.cpp CXX Traj_SQM.cpp CXX Traj_Tinker.cpp CXX Traj_XYZ.cpp CXX TrajectoryFile.cpp CXX TrajectoryIO.cpp CXX TrajFrameCounter.cpp CXX TrajinList.cpp CXX Trajin_Multi.cpp CXX Trajin_Single.cpp CXX TrajIOarray.cpp CXX Trajout_Single.cpp CXX TrajoutList.cpp CXX VariableArray.cpp CXX Vec3.cpp CXX ViewRst.cpp CXX Action_Esander.cpp CXX Command.cpp CXX Cpptraj.cpp CXX Energy_Sander.cpp CXX ReadLine.cpp CXX main.cpp CC molsurf.c cd readline && make all make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src/readline' CC bind.c bind.c: In function ‘rl_translate_keyseq’: bind.c:445:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]    for (i = l = 0; c = seq[i]; i++)    ^ bind.c: In function ‘rl_parse_and_bind’: bind.c:1188:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]        for (i = 1; c = string[i]; i++)        ^ bind.c:1279:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]        for (passc = 0; c = string[i]; i++)        ^ bind.c: In function ‘rl_function_dumper’: bind.c:2051:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]    for (i = 0; name = names[i]; i++)    ^ CC callback.c CC compat.c CC complete.c complete.c: In function ‘fnwidth’: complete.c:604:12: warning: implicit declaration of function ‘wcwidth’ [-Wimplicit-function-declaration]         w = wcwidth (wc);             ^ complete.c: In function ‘_rl_find_completion_word’: complete.c:886:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]        while (rl_point = MB_PREVCHAR (rl_line_buffer, rl_point, MB_FIND_ANY))        ^ complete.c: In function ‘rl_completion_matches’: complete.c:1805:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]    while (string = (*entry_function) (text, matches))    ^ complete.c: In function ‘rl_username_completion_function’: complete.c:1856:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]    while (entry = getpwent ())    ^ CC display.c display.c: In function ‘rl_redisplay’: display.c:714:15: warning: implicit declaration of function ‘wcwidth’ [-Wimplicit-function-declaration]         temp = wcwidth (wc);                ^ display.c:829:8: warning: ‘wc_width’ may be used uninitialized in this function [-Wmaybe-uninitialized]         for (i = 0; i < wc_width; i++)         ^ display.c:462:38: warning: ‘n0’ may be used uninitialized in this function [-Wmaybe-uninitialized]    int newlines, lpos, temp, modmark, n0, num;                                       ^ CC funmap.c CC histexpand.c histexpand.c: In function ‘get_history_event’: histexpand.c:206:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]    for (local_index = i; c = string[i]; i++)    ^ histexpand.c: In function ‘history_expand_internal’: histexpand.c:696:41: warning: variable ‘ws’ set but not used [-Wunused-but-set-variable]       int delimiter, failed, si, l_temp, ws, we;                                          ^ CC histfile.c histfile.c: In function ‘history_truncate_file’: histfile.c:401:7: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result]        write (file, bp, chars_read - (bp - buffer));        ^ CC history.c CC histsearch.c CC input.c input.c: In function ‘rl_read_key’: input.c:423:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]        if (c = _rl_next_macro_key ())        ^ CC isearch.c isearch.c: In function ‘rl_search_history’: isearch.c:620:7: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]    int c, r;        ^ isearch.c: In function ‘_rl_isearch_callback’: isearch.c:658:7: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]    int c, r;        ^ CC keymaps.c CC kill.c CC macro.c CC mbutil.c mbutil.c: In function ‘_rl_find_next_mbchar_internal’: mbutil.c:118:12: warning: implicit declaration of function ‘wcwidth’ [-Wimplicit-function-declaration]         if (wcwidth (wc) == 0)             ^ CC misc.c CC nls.c CC parens.c parens.c: In function ‘rl_insert_close’: parens.c:118:36: warning: variable ‘ready’ set but not used [-Wunused-but-set-variable]        int orig_point, match_point, ready;                                     ^ CC readline.c readline.c: In function ‘readline_internal_char’: readline.c:450:21: warning: variable ‘eof_found’ set but not used [-Wunused-but-set-variable]    static int lastc, eof_found;                      ^ readline.c: At top level: readline.c:1078:1: warning: ‘reset_default_bindings’ defined but not used [-Wunused-function]  reset_default_bindings ()  ^ CC rltty.c CC savestring.c CC search.c CC shell.c CC signals.c CC termcap.c termcap.c: In function ‘memory_out’: termcap.c:95:3: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result]    write (2, "virtual memory exhausted\n", 25);    ^ CC terminal.c CC text.c text.c: In function ‘_rl_overwrite_char’: text.c:814:7: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]    int k;        ^ CC tilde.c tilde.c: In function ‘tilde_expand’: tilde.c:199:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]    if (result = strchr (string, '~'))    ^ CC tparam.c tparam.c: In function ‘memory_out’: tparam.c:51:3: warning: implicit declaration of function ‘write’ [-Wimplicit-function-declaration]    write (2, "virtual memory exhausted\n", 25);    ^ CC undo.c undo.c: In function ‘_rl_copy_undo_list’: undo.c:157:16: warning: ‘roving’ may be used uninitialized in this function [-Wmaybe-uninitialized]    roving->next = 0;                 ^ CC util.c CC version.c version.c:2:14: warning: ‘version_string’ defined but not used [-Wunused-variable]  static char *version_string = "\n$Version: GNU termcap 1.3.1 $\n";               ^ CC vi_mode.c CC xmalloc.c /bin/rm -f libreadline.a ar cqs libreadline.a bind.o callback.o compat.o complete.o display.o funmap.o histexpand.o histfile.o history.o histsearch.o input.o isearch.o keymaps.o kill.o macro.o mbutil.o misc.o nls.o parens.o readline.o rltty.o savestring.o search.o shell.o signals.o termcap.o terminal.o text.o tilde.o tparam.o undo.o util.o version.o vi_mode.o xmalloc.o make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src/readline' cd xdrfile && make all make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src/xdrfile' CC xdrfile.c CC xdr_seek.c CC xdrfile_trr.c CC xdrfile_xtc.c /bin/rm -f libxdrfile.a ar cqs libxdrfile.a xdrfile.o xdr_seek.o xdrfile_trr.o xdrfile_xtc.o make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src/xdrfile' Skipping bundled ARPACK build g++ -o cpptraj SpaceGroup.o Action.o ActionFrameCounter.o ActionList.o Action_Align.o Action_Angle.o Action_AreaPerMol.o Action_AtomMap.o Action_AtomicCorr.o Action_AtomicFluct.o Action_AutoImage.o Action_Average.o Action_Bounds.o Action_Box.o Action_Center.o Action_Channel.o Action_CheckChirality.o Action_CheckStructure.o Action_Closest.o Action_ClusterDihedral.o Action_Contacts.o Action_CreateCrd.o Action_CreateReservoir.o Action_DNAionTracker.o Action_DSSP.o Action_Density.o Action_Diffusion.o Action_Dihedral.o Action_Dipole.o Action_Distance.o Action_DistRmsd.o Action_Energy.o Action_FilterByData.o Action_FixAtomOrder.o Action_FixImagedBonds.o Action_GIST.o Action_Grid.o Action_GridFreeEnergy.o Action_HydrogenBond.o Action_Image.o Action_InfraredSpectrum.o Action_Jcoupling.o Action_LESsplit.o Action_LIE.o Action_LipidOrder.o Action_MakeStructure.o Action_Mask.o Action_Matrix.o Action_MinImage.o Action_Molsurf.o Action_MultiDihedral.o Action_MultiVector.o Action_NAstruct.o Action_NativeContacts.o Action_NMRrst.o Action_OrderParameter.o Action_Outtraj.o Action_PairDist.o Action_Pairwise.o Action_Principal.o Action_Projection.o Action_Pucker.o Action_Radgyr.o Action_Radial.o Action_RandomizeIons.o Action_Remap.o Action_ReplicateCell.o Action_Rmsd.o Action_Rotate.o Action_RunningAvg.o Action_STFC_Diffusion.o Action_Scale.o Action_SetVelocity.o Action_Spam.o Action_Strip.o Action_Surf.o Action_SymmetricRmsd.o Action_Temperature.o Action_Translate.o Action_Unstrip.o Action_Unwrap.o Action_Vector.o Action_VelocityAutoCorr.o Action_Volmap.o Action_Volume.o Action_Watershell.o Action_XtalSymm.o AnalysisList.o Analysis_AmdBias.o Analysis_AutoCorr.o Analysis_Average.o Analysis_Clustering.o Analysis_Corr.o Analysis_ConstantPHStats.o Analysis_CrankShaft.o Analysis_CrdFluct.o Analysis_CrossCorr.o Analysis_CurveFit.o Analysis_Divergence.o Analysis_FFT.o Analysis_HausdorffDistance.o Analysis_Hist.o Analysis_Integrate.o Analysis_IRED.o Analysis_KDE.o Analysis_Lifetime.o Analysis_LowestCurve.o Analysis_Matrix.o Analysis_MeltCurve.o Analysis_Modes.o Analysis_Multicurve.o Analysis_MultiHist.o Analysis_Overlap.o Analysis_PhiPsi.o Analysis_Regression.o Analysis_RemLog.o Analysis_Rms2d.o Analysis_RmsAvgCorr.o Analysis_Rotdif.o Analysis_RunningAvg.o Analysis_Spline.o Analysis_State.o Analysis_Statistics.o Analysis_TI.o Analysis_Timecorr.o Analysis_VectorMath.o Analysis_Wavelet.o ArgList.o Array1D.o AssociatedData.o Atom.o AtomMap.o AtomMask.o AtomType.o AtomTypeArray.o AxisType.o BondSearch.o Box.o BufferedFrame.o BufferedLine.o ByteRoutines.o CharMask.o CIFfile.o ClusterDist.o ClusterList.o ClusterMap.o ClusterMatrix.o ClusterNode.o ClusterSieve.o Cluster_DBSCAN.o Cluster_DPeaks.o Cluster_HierAgglo.o Cluster_Kmeans.o Cluster_ReadInfo.o Cmd.o CmdInput.o CmdList.o ComplexArray.o Constraints.o Control.o CoordinateInfo.o Corr.o Cph.o CpptrajFile.o CpptrajState.o CpptrajStdio.o CurveFit.o DataFile.o DataFileList.o DataIO.o DataIO_CCP4.o DataIO_CharmmFastRep.o DataIO_CharmmOutput.o DataIO_CharmmRepLog.o DataIO_CharmmRtfPrm.o DataIO_Cmatrix.o DataIO_Cpout.o DataIO_Evecs.o DataIO_Gnuplot.o DataIO_Grace.o DataIO_OpenDx.o DataIO_Mdout.o DataIO_NC_Cmatrix.o DataIO_RemLog.o DataIO_Std.o DataIO_VecTraj.o DataIO_Xplor.o DataIO_XVG.o DataSet.o DataSetList.o DataSet_1D.o DataSet_3D.o DataSet_Cmatrix.o DataSet_Cmatrix_DISK.o DataSet_Cmatrix_MEM.o DataSet_Cmatrix_NOMEM.o DataSet_Coords.o DataSet_Coords_CRD.o DataSet_Coords_REF.o DataSet_Coords_TRJ.o DataSet_GridDbl.o DataSet_GridFlt.o DataSet_Mat3x3.o DataSet_MatrixDbl.o DataSet_MatrixFlt.o DataSet_Mesh.o DataSet_Modes.o DataSet_Parameters.o DataSet_pH.o DataSet_PHREMD_Explicit.o DataSet_PHREMD_Implicit.o DataSet_RemLog.o DataSet_Topology.o DataSet_Vector.o DataSet_double.o DataSet_float.o DataSet_integer_disk.o DataSet_integer_mem.o DataSet_string.o Deprecated.o DihedralSearch.o DistRoutines.o Energy.o EnsembleIn.o EnsembleIn_Multi.o EnsembleIn_Single.o EnsembleNavigator.o EnsembleOut.o EnsembleOut_Multi.o EnsembleOut_Single.o EnsembleOutList.o Ewald.o Ewald_ParticleMesh.o Ewald_Regular.o Exec_Analyze.o Exec_Calc.o Exec_CatCrd.o Exec_Change.o Exec_ClusterMap.o Exec_CombineCoords.o Exec_Commands.o Exec_CompareTop.o Exec_CrdAction.o Exec_CrdOut.o Exec_CreateSet.o Exec_DataFile.o Exec_DataFilter.o Exec_DataSetCmd.o Exec_GenerateAmberRst.o Exec_Help.o Exec_LoadCrd.o Exec_LoadTraj.o Exec_ParallelAnalysis.o Exec_ParmBox.o Exec_ParmSolvent.o Exec_ParmStrip.o Exec_ParmWrite.o Exec_PermuteDihedrals.o Exec_Precision.o Exec_PrintData.o Exec_ReadData.o Exec_ReadEnsembleData.o Exec_ReadInput.o Exec_RotateDihedral.o Exec_RunAnalysis.o Exec_ScaleDihedralK.o Exec_SequenceAlign.o Exec_SortEnsembleData.o Exec_SplitCoords.o Exec_System.o Exec_Top.o Exec_Traj.o Exec_UpdateParameters.o Exec_ViewRst.o File_TempName.o FileIO_Bzip2.o FileIO_Gzip.o FileIO_Mpi.o FileIO_MpiShared.o FileIO_Std.o FileName.o FileTypes.o Frame.o GridAction.o HistBin.o Hungarian.o ImageRoutines.o InputTrajCommon.o KDE.o MapAtom.o MaskArray.o MaskToken.o Matrix_3x3.o MetaData.o Mol.o Mol2File.o NameType.o NC_Cmatrix.o NC_Routines.o NetcdfFile.o OutputTrajCommon.o PDBfile.o PairList.o Parallel.o ParallelNetcdf.o ParmFile.o Parm_Amber.o Parm_CharmmPsf.o Parm_CIF.o Parm_Gromacs.o Parm_Mol2.o Parm_PDB.o Parm_SDF.o Parm_Tinker.o ProgressBar.o ProgressTimer.o PubFFT.o Random.o Range.o RPNcalc.o ReferenceAction.o RemdReservoirNC.o Residue.o SDFfile.o SimplexMin.o Spline.o StringRoutines.o StructureCheck.o StructureMapper.o SymmetricRmsdCalc.o TextFormat.o Timer.o TinkerFile.o TopInfo.o Topology.o TorsionRoutines.o Traj_AmberCoord.o Traj_AmberNetcdf.o Traj_AmberRestart.o Traj_AmberRestartNC.o Traj_Binpos.o Traj_CharmmCor.o Traj_CharmmDcd.o Traj_CharmmRestart.o Traj_CIF.o Traj_Conflib.o Traj_GmxTrX.o Traj_GmxXtc.o Traj_Gro.o Traj_Mol2File.o Traj_NcEnsemble.o Traj_PDBfile.o Traj_SDF.o Traj_SQM.o Traj_Tinker.o Traj_XYZ.o TrajectoryFile.o TrajectoryIO.o TrajFrameCounter.o TrajinList.o Trajin_Multi.o Trajin_Single.o TrajIOarray.o Trajout_Single.o TrajoutList.o VariableArray.o Vec3.o ViewRst.o Action_Esander.o Command.o Cpptraj.o Energy_Sander.o ReadLine.o main.o molsurf.o   readline/libreadline.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libarpack.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/liblapack.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libblas.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libfftw3.a -lgfortran /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libnetcdf.a -lbz2 -lz xdrfile/libxdrfile.a mv cpptraj "/mnt/c/Users/Alen/Documents/Research/amber18//bin" make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj' (cd cpptraj && make libcpptraj) make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj' cd src && make libcpptraj make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src' g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBPME -DHAVE_FFTWD=1 -DBUILDTYPE='"AmberTools"' -DAT_VERSION_STRING='"V19.00"' -DBINTRAJ -DHASBZ2 -DHASGZ -DFFTW_FFT -DLIBCPPTRAJ -I/mnt/c/Users/Alen/Documents/Research/amber18//include -Ireadline -Ixdrfile -Wall  -O3  -fPIC   -std=gnu++11  -c -o Action_Esander.LIBCPPTRAJ.o Action_Esander.cpp g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBPME -DHAVE_FFTWD=1 -DBUILDTYPE='"AmberTools"' -DAT_VERSION_STRING='"V19.00"' -DBINTRAJ -DHASBZ2 -DHASGZ -DFFTW_FFT -DLIBCPPTRAJ -I/mnt/c/Users/Alen/Documents/Research/amber18//include -Ireadline -Ixdrfile -Wall  -O3  -fPIC   -std=gnu++11  -c -o Command.LIBCPPTRAJ.o Command.cpp g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBPME -DHAVE_FFTWD=1 -DBUILDTYPE='"AmberTools"' -DAT_VERSION_STRING='"V19.00"' -DBINTRAJ -DHASBZ2 -DHASGZ -DFFTW_FFT -DLIBCPPTRAJ -I/mnt/c/Users/Alen/Documents/Research/amber18//include -Ireadline -Ixdrfile -Wall  -O3  -fPIC   -std=gnu++11  -c -o Cpptraj.LIBCPPTRAJ.o Cpptraj.cpp g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBPME -DHAVE_FFTWD=1 -DBUILDTYPE='"AmberTools"' -DAT_VERSION_STRING='"V19.00"' -DBINTRAJ -DHASBZ2 -DHASGZ -DFFTW_FFT -DLIBCPPTRAJ -I/mnt/c/Users/Alen/Documents/Research/amber18//include -Ireadline -Ixdrfile -Wall  -O3  -fPIC   -std=gnu++11  -c -o Energy_Sander.LIBCPPTRAJ.o Energy_Sander.cpp g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DLIBPME -DHAVE_FFTWD=1 -DBUILDTYPE='"AmberTools"' -DAT_VERSION_STRING='"V19.00"' -DBINTRAJ -DHASBZ2 -DHASGZ -DFFTW_FFT -DLIBCPPTRAJ -I/mnt/c/Users/Alen/Documents/Research/amber18//include -Ireadline -Ixdrfile -Wall  -O3  -fPIC   -std=gnu++11  -c -o ReadLine.LIBCPPTRAJ.o ReadLine.cpp Skipping bundled ARPACK build g++ -shared -o "/mnt/c/Users/Alen/Documents/Research/amber18//lib"/libcpptraj.so SpaceGroup.o Action.o ActionFrameCounter.o ActionList.o Action_Align.o Action_Angle.o Action_AreaPerMol.o Action_AtomMap.o Action_AtomicCorr.o Action_AtomicFluct.o Action_AutoImage.o Action_Average.o Action_Bounds.o Action_Box.o Action_Center.o Action_Channel.o Action_CheckChirality.o Action_CheckStructure.o Action_Closest.o Action_ClusterDihedral.o Action_Contacts.o Action_CreateCrd.o Action_CreateReservoir.o Action_DNAionTracker.o Action_DSSP.o Action_Density.o Action_Diffusion.o Action_Dihedral.o Action_Dipole.o Action_Distance.o Action_DistRmsd.o Action_Energy.o Action_FilterByData.o Action_FixAtomOrder.o Action_FixImagedBonds.o Action_GIST.o Action_Grid.o Action_GridFreeEnergy.o Action_HydrogenBond.o Action_Image.o Action_InfraredSpectrum.o Action_Jcoupling.o Action_LESsplit.o Action_LIE.o Action_LipidOrder.o Action_MakeStructure.o Action_Mask.o Action_Matrix.o Action_MinImage.o Action_Molsurf.o Action_MultiDihedral.o Action_MultiVector.o Action_NAstruct.o Action_NativeContacts.o Action_NMRrst.o Action_OrderParameter.o Action_Outtraj.o Action_PairDist.o Action_Pairwise.o Action_Principal.o Action_Projection.o Action_Pucker.o Action_Radgyr.o Action_Radial.o Action_RandomizeIons.o Action_Remap.o Action_ReplicateCell.o Action_Rmsd.o Action_Rotate.o Action_RunningAvg.o Action_STFC_Diffusion.o Action_Scale.o Action_SetVelocity.o Action_Spam.o Action_Strip.o Action_Surf.o Action_SymmetricRmsd.o Action_Temperature.o Action_Translate.o Action_Unstrip.o Action_Unwrap.o Action_Vector.o Action_VelocityAutoCorr.o Action_Volmap.o Action_Volume.o Action_Watershell.o Action_XtalSymm.o AnalysisList.o Analysis_AmdBias.o Analysis_AutoCorr.o Analysis_Average.o Analysis_Clustering.o Analysis_Corr.o Analysis_ConstantPHStats.o Analysis_CrankShaft.o Analysis_CrdFluct.o Analysis_CrossCorr.o Analysis_CurveFit.o Analysis_Divergence.o Analysis_FFT.o Analysis_HausdorffDistance.o Analysis_Hist.o Analysis_Integrate.o Analysis_IRED.o Analysis_KDE.o Analysis_Lifetime.o Analysis_LowestCurve.o Analysis_Matrix.o Analysis_MeltCurve.o Analysis_Modes.o Analysis_Multicurve.o Analysis_MultiHist.o Analysis_Overlap.o Analysis_PhiPsi.o Analysis_Regression.o Analysis_RemLog.o Analysis_Rms2d.o Analysis_RmsAvgCorr.o Analysis_Rotdif.o Analysis_RunningAvg.o Analysis_Spline.o Analysis_State.o Analysis_Statistics.o Analysis_TI.o Analysis_Timecorr.o Analysis_VectorMath.o Analysis_Wavelet.o ArgList.o Array1D.o AssociatedData.o Atom.o AtomMap.o AtomMask.o AtomType.o AtomTypeArray.o AxisType.o BondSearch.o Box.o BufferedFrame.o BufferedLine.o ByteRoutines.o CharMask.o CIFfile.o ClusterDist.o ClusterList.o ClusterMap.o ClusterMatrix.o ClusterNode.o ClusterSieve.o Cluster_DBSCAN.o Cluster_DPeaks.o Cluster_HierAgglo.o Cluster_Kmeans.o Cluster_ReadInfo.o Cmd.o CmdInput.o CmdList.o ComplexArray.o Constraints.o Control.o CoordinateInfo.o Corr.o Cph.o CpptrajFile.o CpptrajState.o CpptrajStdio.o CurveFit.o DataFile.o DataFileList.o DataIO.o DataIO_CCP4.o DataIO_CharmmFastRep.o DataIO_CharmmOutput.o DataIO_CharmmRepLog.o DataIO_CharmmRtfPrm.o DataIO_Cmatrix.o DataIO_Cpout.o DataIO_Evecs.o DataIO_Gnuplot.o DataIO_Grace.o DataIO_OpenDx.o DataIO_Mdout.o DataIO_NC_Cmatrix.o DataIO_RemLog.o DataIO_Std.o DataIO_VecTraj.o DataIO_Xplor.o DataIO_XVG.o DataSet.o DataSetList.o DataSet_1D.o DataSet_3D.o DataSet_Cmatrix.o DataSet_Cmatrix_DISK.o DataSet_Cmatrix_MEM.o DataSet_Cmatrix_NOMEM.o DataSet_Coords.o DataSet_Coords_CRD.o DataSet_Coords_REF.o DataSet_Coords_TRJ.o DataSet_GridDbl.o DataSet_GridFlt.o DataSet_Mat3x3.o DataSet_MatrixDbl.o DataSet_MatrixFlt.o DataSet_Mesh.o DataSet_Modes.o DataSet_Parameters.o DataSet_pH.o DataSet_PHREMD_Explicit.o DataSet_PHREMD_Implicit.o DataSet_RemLog.o DataSet_Topology.o DataSet_Vector.o DataSet_double.o DataSet_float.o DataSet_integer_disk.o DataSet_integer_mem.o DataSet_string.o Deprecated.o DihedralSearch.o DistRoutines.o Energy.o EnsembleIn.o EnsembleIn_Multi.o EnsembleIn_Single.o EnsembleNavigator.o EnsembleOut.o EnsembleOut_Multi.o EnsembleOut_Single.o EnsembleOutList.o Ewald.o Ewald_ParticleMesh.o Ewald_Regular.o Exec_Analyze.o Exec_Calc.o Exec_CatCrd.o Exec_Change.o Exec_ClusterMap.o Exec_CombineCoords.o Exec_Commands.o Exec_CompareTop.o Exec_CrdAction.o Exec_CrdOut.o Exec_CreateSet.o Exec_DataFile.o Exec_DataFilter.o Exec_DataSetCmd.o Exec_GenerateAmberRst.o Exec_Help.o Exec_LoadCrd.o Exec_LoadTraj.o Exec_ParallelAnalysis.o Exec_ParmBox.o Exec_ParmSolvent.o Exec_ParmStrip.o Exec_ParmWrite.o Exec_PermuteDihedrals.o Exec_Precision.o Exec_PrintData.o Exec_ReadData.o Exec_ReadEnsembleData.o Exec_ReadInput.o Exec_RotateDihedral.o Exec_RunAnalysis.o Exec_ScaleDihedralK.o Exec_SequenceAlign.o Exec_SortEnsembleData.o Exec_SplitCoords.o Exec_System.o Exec_Top.o Exec_Traj.o Exec_UpdateParameters.o Exec_ViewRst.o File_TempName.o FileIO_Bzip2.o FileIO_Gzip.o FileIO_Mpi.o FileIO_MpiShared.o FileIO_Std.o FileName.o FileTypes.o Frame.o GridAction.o HistBin.o Hungarian.o ImageRoutines.o InputTrajCommon.o KDE.o MapAtom.o MaskArray.o MaskToken.o Matrix_3x3.o MetaData.o Mol.o Mol2File.o NameType.o NC_Cmatrix.o NC_Routines.o NetcdfFile.o OutputTrajCommon.o PDBfile.o PairList.o Parallel.o ParallelNetcdf.o ParmFile.o Parm_Amber.o Parm_CharmmPsf.o Parm_CIF.o Parm_Gromacs.o Parm_Mol2.o Parm_PDB.o Parm_SDF.o Parm_Tinker.o ProgressBar.o ProgressTimer.o PubFFT.o Random.o Range.o RPNcalc.o ReferenceAction.o RemdReservoirNC.o Residue.o SDFfile.o SimplexMin.o Spline.o StringRoutines.o StructureCheck.o StructureMapper.o SymmetricRmsdCalc.o TextFormat.o Timer.o TinkerFile.o TopInfo.o Topology.o TorsionRoutines.o Traj_AmberCoord.o Traj_AmberNetcdf.o Traj_AmberRestart.o Traj_AmberRestartNC.o Traj_Binpos.o Traj_CharmmCor.o Traj_CharmmDcd.o Traj_CharmmRestart.o Traj_CIF.o Traj_Conflib.o Traj_GmxTrX.o Traj_GmxXtc.o Traj_Gro.o Traj_Mol2File.o Traj_NcEnsemble.o Traj_PDBfile.o Traj_SDF.o Traj_SQM.o Traj_Tinker.o Traj_XYZ.o TrajectoryFile.o TrajectoryIO.o TrajFrameCounter.o TrajinList.o Trajin_Multi.o Trajin_Single.o TrajIOarray.o Trajout_Single.o TrajoutList.o VariableArray.o Vec3.o ViewRst.o molsurf.o Action_Esander.LIBCPPTRAJ.o Command.LIBCPPTRAJ.o Cpptraj.LIBCPPTRAJ.o Energy_Sander.LIBCPPTRAJ.o ReadLine.LIBCPPTRAJ.o   /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libarpack.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/liblapack.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libblas.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libfftw3.a -lgfortran /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libnetcdf.a -lbz2 -lz xdrfile/libxdrfile.a make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj' make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src' (cd ambpdb && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/ambpdb' [AMBPDB]  CXX AmbPDB.cpp [AMBPDB]  CXX ambpdb mv ambpdb /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/ambpdb' (cd sff && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sff' [SFF]  FLEX mm_options.l gcc -MM conjgrad.c lmodC.c memutil.c nblist.c newton.c nmode.c prm.c rand2.c sasad.c sff.c xminC.c AmberNetcdf.c ptrajmask.c lex.mmo.c > depend [SFF]  CC conjgrad.c [SFF]  CC lmodC.c [SFF]  CC memutil.c [SFF]  CC nblist.c [SFF]  CC newton.c [SFF]  CC nmode.c nmode.c: In function ‘setgam’: nmode.c:1030:8: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]         fscanf(ffp, "%s", str);         ^ nmode.c:1032:8: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]         fscanf(ffp, "%s \n", str);         ^ [SFF]  CC prm.c prm.c: In function ‘wrparm’: prm.c:2022:19: warning: embedded ‘\0’ in format [-Wformat-contains-nul]                    "%%VERSION  VERSION_STAMP = V0001.000  DATE = %m/%d/%y  %H:%M:%S\0",                    ^ prm.c: In function ‘copyparm’: prm.c:2715:22: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘char (*)[6]’ [-Wformat=]        sprintf(e_msg, "copyparm AtomNames %s", prm->AtomNames);                       ^ prm.c:2726:22: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘char (*)[6]’ [-Wformat=]        sprintf(e_msg, "copyparm ResNames %s", prm->ResNames);                       ^ prm.c:2780:22: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘char (*)[6]’ [-Wformat=]        sprintf(e_msg, "copyparm AtomType %s", prm->AtomType);                       ^ prm.c:2786:22: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘char (*)[6]’ [-Wformat=]        sprintf(e_msg, "copyparm AtomTree %s", prm->AtomTree);                       ^ prm.c: In function ‘rdparm’: prm.c:634:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]        fscanf(file,        ^ prm.c:681:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, "%d", &prm->Numextra);           ^ prm.c:787:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Charges[i]);           ^ prm.c:808:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %le", &prm->Masses[i]);           ^ prm.c:828:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d", &prm->Iac[i]);           ^ prm.c:845:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d", &prm->Iblo[i]);           ^ prm.c:862:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d", &prm->Cno[i]);           ^ prm.c:901:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d", &prm->Ipres[i]);           ^ prm.c:922:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Rk[i]);           ^ prm.c:943:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Req[i]);           ^ prm.c:964:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Tk[i]);           ^ prm.c:985:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Teq[i]);           ^ prm.c:1006:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Pk[i]);           ^ prm.c:1027:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Pn[i]);           ^ prm.c:1053:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Phase[i]);           ^ prm.c:1078:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]                 fscanf(file, " %lf", &prm->Scee[i]);                 ^ prm.c:1103:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]                 fscanf(file, " %lf", &prm->Scnb[i]);                 ^ prm.c:1125:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]                 fscanf(file, " %d", &prm->AtomicNum[i]);                 ^ prm.c:1155:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Solty[i]);           ^ prm.c:1177:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Cn1[i]);           ^ prm.c:1199:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->Cn2[i]);           ^ prm.c:1222:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d %d %d",           ^ prm.c:1245:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d %d %d",           ^ prm.c:1269:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d %d %d %d",           ^ prm.c:1295:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d %d %d %d",           ^ prm.c:1322:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d %d %d %d %d",           ^ prm.c:1350:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d %d %d %d %d",           ^ prm.c:1373:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d", &prm->ExclAt[i]);           ^ prm.c:1391:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->HB12[i]);           ^ prm.c:1412:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &prm->HB10[i]);           ^ prm.c:1434:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf", &H[i]);           ^ prm.c:1487:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d", &prm->TreeJoin[i]);           ^ prm.c:1506:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d", &prm->AtomRes[i]);           ^ prm.c:1543:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d %d %d", &prm->Iptres, &prm->Nspm, &prm->Nspsol);           ^ prm.c:1556:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]              fscanf(file, " %d", &prm->Boundary[i]);              ^ prm.c:1568:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf %lf %lf %lf",           ^ prm.c:1592:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %d ", &prm->Natcap);           ^ prm.c:1601:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file, " %lf %lf %lf %lf",           ^ prm.c:1627:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]              fscanf(file, " %lf", &prm->Rborn[i]);              ^ prm.c:1642:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]              fscanf(file, " %lf", &prm->Fs[i]);              ^ prm.c:1753:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]           fscanf(file,"%d%d",&prm->Ncomplex, &prm->Nstrand);           ^ prm.c:1774:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]                 fscanf(file, " %d", &prm->Ipstrand[i]);                 ^ prm.c:1783:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]                 fscanf(file, " %d", &prm->Ipcomplex[i]);                 ^ [SFF]  CC rand2.c [SFF]  CC sasad.c [SFF]  CC sff.c sff.c: In function ‘checkpoint’: sff.c:926:17: warning: embedded ‘\0’ in format [-Wformat-contains-nul]     sprintf(buf, "%d\0", iter);                  ^ sff.c: In function ‘mme_init_sff’: sff.c:1278:7: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]        asprintf( &ncfilename, "%s", ncname );        ^ [SFF]  CC xminC.c [SFF]  CC AmberNetcdf.c [SFF]  CC ptrajmask.c cd ../rism && \ make amber_rism_interface.NAB.o make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' [RISM] FC amber_rism_interface.F90 make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' [SFF]  AR libsff ar: creating /mnt/c/Users/Alen/Documents/Research/amber18//lib/libsff.a [SFF]  CC hcp_getpdb.c make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/sff' (cd pbsa && make -j1 libinstall ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/pbsa' [PBSA]  FC timer.F90 [PBSA]  FC density.F90 [PBSA]  FC sa_driver.F90 [PBSA]  FC memory_module.F90 [PBSA]  FC decomp.F90 [PBSA]  FC pb_force.F90 [PBSA]  FC pb_iimdrv.F90 [PBSA]  FC interpX.F90 [PBSA]  FC parms.F90 [PBSA]  FC pb_anaiim.F90 [PBSA]  FC decomp.F90 [PBSA]  FC pb_force.F90 [PBSA]  FC pb_iimdrv.F90 [PBSA]  FC pb_nhadrv.F90 [PBSA]  FC pb_augdrv.F90 [PBSA]  FC pb_p3m.F90 [PBSA]  FC pb_fdfrc.F90 [PBSA]  FC np_force.F90 [PBSA]  FC pb_read.F90 [PBSA]  FC curv.F90 [PBSA]  FC dsvdc.F90 [PBSA]  FC gen_dx_file.F90 [PBSA]  FC GrToPr.F90 [PBSA]  CC interface.c [PBSA]  FC miniop.F90 [PBSA]  FC myopen.F90 [PBSA]  FC pb_bldsys.F90 [PBSA]  FC pb_crgview.F90 [PBSA]  FC pb_direct.F90 [PBSA]  FC pb_lsolver.F90 [PBSA]  FC pb_nlsolver.F90 [PBSA]  FC pb_fddrv.F90 [PBSA]  FC pb_init.F90 [PBSA]  FC pb_list.F90 [PBSA]  FC pb_mpfrc.F90 [PBSA]  FC pbsaapi.F90 [PBSA]  FC pbsa_lib.F90 [PBSA]  FC pb_write.F90 [PBSA]  FC phidev.F90 [PBSA]  FC project.F90 [PBSA]  FC pythag.F90 [PBSA]  FC rfree.F90 [PBSA]  FC rgroup.F90 [PBSA]  FC svbksb.F90 [PBSA]  FC svdcmp.F90 [PBSA]  FC transf.F90 cd ../lib && make nxtsec.o random.o make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' make[3]: 'nxtsec.o' is up to date. make[3]: 'random.o' is up to date. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' [PBSA]  AR libpbsa.a ar: creating libpbsa.a /bin/mv libpbsa.a /mnt/c/Users/Alen/Documents/Research/amber18//lib make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/pbsa' (cd rism && make yes ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' [RISM]  AR librism [RISM] FC rism1d.F90 [RISM]  FC rism1d [RISM] FC rism3d.thermo.F90 [RISM]  FC rism3d.thermo [RISM] FC rism3d.orave.F90 [RISM]  FC rism3d.orave [RISM] FC volslice.F90 [RISM]  FC volslice /bin/mv rism1d rism3d.thermo  rism3d.orave \ /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' (cd nab && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nab' [NAB]  CC /mnt/c/Users/Alen/Documents/Research/amber18//bin/nab [NAB]  CC nab2c.c [NAB]  FLEX nablex.l [NAB]  BISON nabgrm.y nabgrm.y: warning: 3 shift/reduce conflicts [-Wconflicts-sr] [NAB]  CC cgen.c [NAB]  CC y.tab.c (cd semantics; make) make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nab/semantics' gcc -DDATDIR='"/mnt/c/Users/Alen/Documents/Research/amber18//dat"' -DATRFILE='"attribute.tab"' -DSYM_FILE='"../y.tab.h"' -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN      \            -o parse parse.c ./parse *.rules ./parse: 223 symbols. ./parse:  19 types, lastuser = 14, v_error = 14. ./parse:   9 classes. ./parse:   8 kinds. ./parse:   4 accesses. ./parse:  27 attributes. ./parse:  40 rules. ./parse:  40 used symbols. ./parse:  15 used types. ./parse:   7 used classes. ./parse:   7 used kinds. ./parse:   0 errors. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nab/semantics' mv semantics/checkexpr.c . [NAB]  CC checkexpr.c [NAB]  CC dumpnode.c [NAB]  CC errormsg.c [NAB]  CC fixexpr.c [NAB]  CC node.c [NAB]  CC symbol.c [NAB]  CC /mnt/c/Users/Alen/Documents/Research/amber18//bin/nab2c [NAB]  CC axis2frame.c [NAB]  CC bonded_atoms.c [NAB]  CC boundsutil.c boundsutil.c: In function ‘rd_bmat’: boundsutil.c:965:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]     fread( bp->b_bmat[ ai ], sizeof( REAL_T ), bp->b_natoms, bmfp );     ^ boundsutil.c:967:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]    fread( &nchiral, sizeof( int ), 1, bmfp );    ^ boundsutil.c:974:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]    fread( bp->b_chiral, sizeof( CHIRAL_T ), nchiral, bmfp );    ^ [NAB]  CC chirvol.c [NAB]  CC database.c [NAB]  CC deform_ener.c [NAB]  CC dump.c [NAB]  FLEX dg_options.l [NAB]  CC embed.c [NAB]  NAB fd_helix.nab [NAB]  CC frameutil.c [NAB]  CC getdist.c [NAB]  CC gsub.c [NAB]  CC hashutil.c [NAB]  CC jacobi.c [NAB]  CC match.c [NAB]  CC matop.c [NAB]  CC molio.c gcc -c -O3 -mtune=native  -fPIC  -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN      molio.c [NAB]  CC molsurf.c [NAB]  CC molutil.c [NAB]  CC pointutil.c [NAB]  CC prm.c [NAB]  CC regexp.c [NAB]  CC reslib.c [NAB]  CC select_atoms.c [NAB]  CC traceback.c [NAB]  CC mme_init.c [NAB]  CC stringutil.c [NAB]  CC temputil.c [NAB]  CC time.c [NAB]  CC tm_malloc.c [NAB]  NAB bdna.nab [NAB]  NAB dg_helix.nab [NAB]  NAB getchivol.nab [NAB]  NAB getseq_from_pdb.nab [NAB]  NAB getxyz_from_pdb.nab [NAB]  NAB getpdb_prm.nab [NAB]  NAB linkprot.nab [NAB]  NAB link_na.nab [NAB]  NAB na_anal.nab [NAB]  NAB setboundsfromdb.nab [NAB]  NAB setchiplane.nab [NAB]  NAB wc_basepair.nab [NAB]  NAB wc_complement.nab [NAB]  NAB wc_helix.nab [NAB]  CC libnab.a ar: creating libnab.a make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nab' (cd etc && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/etc' [ETC]  CC elsize.c [ETC]  CC elsize [ETC]  NAB molsurf gfortran -DBINTRAJ -DEMIL    -c -O0 -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o lapack.o lapack.F gfortran -DBINTRAJ -DEMIL    -c -O0 -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o resp.o resp.F [ETC]  FC resp gfortran -DBINTRAJ -DEMIL    -c -ffree-form -O0 -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o tinker_to_amber.o tinker_to_amber.F90 gfortran -DBINTRAJ -DEMIL    -c -O0 -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o cspline.o cspline.F [ETC]  FC tinker_to_amber gfortran -DBINTRAJ -DEMIL    -c -ffree-form -O0 -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o new_crd_to_dyn.o new_crd_to_dyn.F90 cd ../lib; make nxtsec.o make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' make[3]: 'nxtsec.o' is up to date. make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/lib' [ETC]  FC new_crd_to_dyn gfortran -DBINTRAJ -DEMIL    -c -ffree-form -O0 -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o new_to_old_crd.o new_to_old_crd.F90 [ETC]  FC new_to_old_crd gfortran -DBINTRAJ -DEMIL    -c -ffree-form -O0 -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o fix_new_inpcrd_vel.o fix_new_inpcrd_vel.F90 [ETC]  FC fix_new_inpcrd_vel /bin/mv elsize molsurf resp tinker_to_amber new_crd_to_dyn new_to_old_crd fix_new_inpcrd_vel /mnt/c/Users/Alen/Documents/Research/amber18//bin /bin/cp process_mdout.perl process_minout.perl mdout2pymbar.pl /mnt/c/Users/Alen/Documents/Research/amber18//bin /bin/cp sgldinfo.sh sgldwt.sh /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/etc' (if [ yes = "yes" ]; then \         cd rism && make rism3d.snglpnt; \ fi;\ ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' flex rism_options.l [RISM]  CC rism3d.snglpnt make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/rism' (cd mdgx && make yes ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/mdgx' [MDGX]  CC  CompFrc.c [MDGX]  CC  BSpline.c [MDGX]  CC  Grid.c [MDGX]  CC  Random.c [MDGX]  CC  mdgxVector.c [MDGX]  CC  Matrix.c [MDGX]  CC  ChargeMap.c [MDGX]  CC  pmeRecip.c [MDGX]  CC  mleRecip.c [MDGX]  CC  pmeDirect.c [MDGX]  CC  CrdManip.c [MDGX]  CC  CellManip.c [MDGX]  CC  Topology.c [MDGX]  CC  Trajectory.c [MDGX]  CC  SpecialMath.c [MDGX]  CC  Nonbonded.c [MDGX]  CC  Bonded.c [MDGX]  CC  Parse.c Parse.c: In function ‘ReadNamelistLine’: Parse.c:725:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, MAXLINE, inp);    ^ [MDGX]  CC  Command.c Command.c: In function ‘CheckProgramExistence’: Command.c:1532:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]    system(syscall);    ^ [MDGX]  CC  Constraints.c [MDGX]  CC  Thermostats.c [MDGX]  CC  Barostats.c [MDGX]  CC  Integrator.c [MDGX]  CC  Timings.c [MDGX]  CC  Manual.c [MDGX]  CC  VirtualSites.c [MDGX]  CC  Buckingham.c [MDGX]  CC  ThermoDyn.c [MDGX]  CC  ChargeFit.c ChargeFit.c: In function ‘ReadEPotGrid’: ChargeFit.c:293:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, 128, inp);      ^ ChargeFit.c:312:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, MAXLINE, inp);    ^ ChargeFit.c:314:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, MAXLINE, inp);    ^ ChargeFit.c:316:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, MAXLINE, inp);    ^ ChargeFit.c:322:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, MAXLINE, inp);      ^ ChargeFit.c:414:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]     fscanf(inp, "%f", &ftmp[k]);     ^ [MDGX]  CC  ParamOut.c [MDGX]  CC  ParamRead.c [MDGX]  CC  ParamFit.c [MDGX]  CC  IPolQ.c IPolQ.c: In function ‘PerformIPolQ’: IPolQ.c:2423:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]      system(syscall);      ^ IPolQ.c: In function ‘ManageQMCalc’: IPolQ.c:2045:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]    system(syscall);    ^ IPolQ.c:2047:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(inp, "%s", pwd);    ^ IPolQ.c:2050:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]    system(syscall);    ^ IPolQ.c:2186:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]    system(syscall);    ^ IPolQ.c: In function ‘WriteGaussianInput’: IPolQ.c:1680:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]     fgets(line, 128, vacinp);     ^ IPolQ.c:1683:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]     fgets(line, 128, vacinp);     ^ IPolQ.c: In function ‘ReadOrcaVpot’: IPolQ.c:1922:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]      fscanf(inp, "%d", &i);      ^ IPolQ.c:1937:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]      fscanf(inp, "%d", &npt);      ^ IPolQ.c:1939:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]        fscanf(inp, "%lf%lf%lf%lf\n", &ptx, &pty, &ptz, &val);        ^ IPolQ.c:2014:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]      system(finame);      ^ [MDGX]  CC  ConfigSamp.c [MDGX]  CC  SinglePointEval.c [MDGX]  CC  LoopBuilder.c LoopBuilder.c: In function ‘EvenCircle’: LoopBuilder.c:105:5: warning: implicit declaration of function ‘SetDVec’ [-Wimplicit-function-declaration]      SetDVec(frc.data, 3*npts, 0.0);      ^ LoopBuilder.c: In function ‘CalcPath’: LoopBuilder.c:274:5: warning: implicit declaration of function ‘ReflectDVec’ [-Wimplicit-function-declaration]      ReflectDVec(path->xcoef, pathV, 3*nk);      ^ LoopBuilder.c: In function ‘DetectMobileAtoms’: LoopBuilder.c:453:5: warning: implicit declaration of function ‘IVec2VecAdd’ [-Wimplicit-function-declaration]      IVec2VecAdd(lpbinp->movable, amask, tp->natom);      ^ LoopBuilder.c:456:22: warning: implicit declaration of function ‘ISum’ [-Wimplicit-function-declaration]    lpbinp->allmove = (ISum(lpbinp->movable, tp->natom) == tp->natom) ? 1 : 0;                       ^ LoopBuilder.c: In function ‘LoopBuilder’: LoopBuilder.c:477:3: warning: implicit declaration of function ‘GetPrmTop’ [-Wimplicit-function-declaration]    GetPrmTop(tp, tj, 1);    ^ LoopBuilder.c:492:3: warning: implicit declaration of function ‘DestroyCoord’ [-Wimplicit-function-declaration]    DestroyCoord(&tc);    ^ [MDGX]  CC  Restraints.c Restraints.c: In function ‘ReadRestraintGrid’: Restraints.c:48:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, 128, inp);    ^ Restraints.c:49:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, 128, inp);    ^ Restraints.c:52:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, 128, inp);      ^ Restraints.c:54:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, 128, inp);    ^ Restraints.c:64:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, 128, inp);    ^ Restraints.c:93:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, 128, inp);    ^ Restraints.c:99:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]      fscanf(inp, "%d", &i);      ^ Restraints.c:107:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]   fscanf(inp, "%E", &rgrd.map[j][i][k]);   ^ Restraints.c:113:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(inp, "%d", &i);    ^ [MDGX]  CC  Debug.c Debug.c: In function ‘CellChecksum’: Debug.c:935:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]        system(syscall);        ^ Debug.c:944:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]      system(syscall);      ^ [MDGX]  CC  BroadcastCommand.c [MDGX]  CC  MPIMap.c [MDGX]  CC  MPITypeCast.c [MDGX]  CC  ptrajmask.c [MDGX]  CC  AmberNetcdf.c [MDGX]  CC  mdgx.c [MDGX]  CC  /mnt/c/Users/Alen/Documents/Research/amber18//bin/mdgx [MDGX]  CC  Wrappers.c [MDGX]  CC  /mnt/c/Users/Alen/Documents/Research/amber18//lib/libmdgx.so make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/mdgx' (cd xtalutil && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/xtalutil' [XTALUTIL]  CC AddToBox.c AddToBox.c: In function ‘main’: AddToBox.c:381:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]      system(syscall);      ^ [XTALUTIL]  CC crdmanip.c [XTALUTIL]  CC grid.c [XTALUTIL]  CC listRead.c [XTALUTIL]  CC matrix.c [XTALUTIL]  CC pdbRead.c [XTALUTIL]  CC QuatAlign.c [XTALUTIL]  CC ran2.c [XTALUTIL]  CC topRead.c topRead.c: In function ‘GetPrmTop’: topRead.c:30:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(tp->vstamp, 128, inp);      ^ topRead.c:34:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]      fscanf(inp,      ^ topRead.c:110:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(tp->RadSet, 128, inp);      ^ topRead.c:175:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]          fscanf(inp, "%d%d%d", &tp->iptres, &tp->nspm, &tp->nspsol);          ^ topRead.c:182:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]          fscanf(inp, "%lf%lf%lf%lf", &tp->smbx.beta, &tp->smbx.x,          ^ topRead.c: In function ‘GetRst’: topRead.c:204:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, MAXLINE, inp);      ^ topRead.c:205:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, MAXLINE, inp);      ^ topRead.c:219:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]          fscanf(inp, "%lf", &tc->loc[i]);          ^ topRead.c:224:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]              fscanf(inp, "%lf", &tc->vel[i]);              ^ topRead.c:229:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]              fscanf(inp, "%lf", &tc->box[i]);              ^ topRead.c: In function ‘ReadToFlag’: topRead.c:260:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]              fgets(line, MAXLINE, inp);              ^ topRead.c: In function ‘LoadInteger’: topRead.c:312:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]          fscanf(inp, "%d", &s[i]);          ^ topRead.c: In function ‘LoadDouble’: topRead.c:328:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]          fscanf(inp, "%lf", &s[i]);          ^ [XTALUTIL]  CC vector.c [XTALUTIL]  CC AddToBox [XTALUTIL]  CC ChBox.c ChBox.c: In function ‘main’: ChBox.c:84:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, 128, inp);    ^ ChBox.c:85:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(inp, "%d", &natm);    ^ ChBox.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, MAXLINE, inp);    ^ ChBox.c:94:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, MAXLINE, inp);      ^ [XTALUTIL]  CC ChBox [XTALUTIL]  CC PropPDB.c [XTALUTIL]  CC PropPDB [XTALUTIL]  CC UnitCell.c [XTALUTIL]  CC UnitCell [XTALUTIL]  CC CheckMD.c [XTALUTIL]  CC CheckMD mv AddToBox ChBox PropPDB UnitCell CheckMD /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/xtalutil' (cd saxs && make install ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/saxs' [SAXS]  CXX saxs_rism.cpp [SAXS]  CXX lebedev.cpp [SAXS]  CXX atm_f.cpp [SAXS]  CXX dx.cpp [SAXS]  CXX f_calc.cpp [SAXS]  CXX IO.cpp [SAXS]  CXX pdb.cpp [SAXS]  CXX vol_decomp.cpp [SAXS]  CXX saxs_rism [SAXS]  CXX saxs_md.cpp [SAXS]  CXX saxs_md [SAXS]  CXX libsaxs_rism.so [SAXS]  CXX libsaxs_md.so make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/saxs' (cd mm_pbsa && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/mm_pbsa' gfortran -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include     -c -o make_crd_hg.o make_crd_hg.F gfortran -DBINTRAJ -DEMIL    -fPIC    -I/mnt/c/Users/Alen/Documents/Research/amber18//include -I/mnt/c/Users/Alen/Documents/Research/amber18//include    -o /mnt/c/Users/Alen/Documents/Research/amber18//bin/make_crd_hg make_crd_hg.o \         ../lib/amopen.o ../lib/mexit.o /mnt/c/Users/Alen/Documents/Research/amber18//bin/nab  -o /mnt/c/Users/Alen/Documents/Research/amber18//bin/mm_pbsa_nabnmode mm_pbsa_nabnmode.nab cp mm_pbsa.pl mm_pbsa_statistics.pl /mnt/c/Users/Alen/Documents/Research/amber18//bin cp *.pm /mnt/c/Users/Alen/Documents/Research/amber18//lib/perl/mm_pbsa/ make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/mm_pbsa' (cd FEW && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW' gcc miscellaneous/draw_membrane2.c -lm -o miscellaneous/draw_membrane2 miscellaneous/draw_membrane2.c: In function ‘main’: miscellaneous/draw_membrane2.c:213:12: warning: format ‘%i’ expects argument of type ‘int *’, but argument 4 has type ‘float *’ [-Wformat=]  fscanf(in, "%6s %i %5s %5s %4s %6s %4s %i %5s %i %4s %7s \n",s,&tmp,s,s,s,s,s,&tmp,s,&dim3,s,s);             ^ miscellaneous/draw_membrane2.c:213:12: warning: format ‘%i’ expects argument of type ‘int *’, but argument 10 has type  float *’ [-Wformat=] miscellaneous/draw_membrane2.c:317:12: warning: format ‘%i’ expects argument of type ‘int *’, but argument 4 has type ‘float *’ [-Wformat=]  fscanf(in, "%6s %i %5s %5s %4s %6s %4s %i %5s %i %4s %7s \n",s,&tmp,s,s,s,s,s,&tmp,s, &tmp,s,s);             ^ miscellaneous/draw_membrane2.c:317:12: warning: format ‘%i’ expects argument of type ‘int *’, but argument 10 has type  float *’ [-Wformat=] miscellaneous/draw_membrane2.c:317:12: warning: format ‘%i’ expects argument of type ‘int *’, but argument 12 has type  float *’ [-Wformat=] miscellaneous/draw_membrane2.c:377:12: warning: format ‘%i’ expects argument of type ‘int *’, but argument 4 has type ‘float *’ [-Wformat=]  fscanf(in, "%6s %i %5s %5s %4s %6s %4s %i %5s %i %4s %7s \n",s,&tmp,s,s,s,s,s,&tmp,s, &tmp,s,s);             ^ miscellaneous/draw_membrane2.c:377:12: warning: format ‘%i’ expects argument of type ‘int *’, but argument 10 has type  float *’ [-Wformat=] miscellaneous/draw_membrane2.c:377:12: warning: format ‘%i’ expects argument of type ‘int *’, but argument 12 has type  float *’ [-Wformat=] AMBER_PREFIX=/mnt/c/Users/Alen/Documents/Research/amber18/ AMBER_SOURCE=/mnt/c/Users/Alen/Documents/Research/amber18/ /bin/sh setup.sh Checking if your kit is complete... Looks good Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.33 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::File::VRML Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::File::SMARTS 0.21 not found. Warning: prerequisite Chemistry::File::SMILES 0.43 not found. Warning: prerequisite Chemistry::InternalCoords 0.18 not found. Warning: prerequisite Chemistry::Mol 0.33 not found. Warning: prerequisite Chemistry::Pattern 0.25 not found. Warning: prerequisite Chemistry::Ring 0.18 not found. Warning: prerequisite Math::VectorReal 1.00 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::3DBuilder Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Math::VectorReal 1 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::Mol Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::3DBuilder 0.1 not found. Warning: prerequisite Chemistry::Bond::Find 0.21 not found. Warning: prerequisite Chemistry::File::SMARTS 0.11 not found. Warning: prerequisite Chemistry::Isotope 0.1 not found. Warning: prerequisite Chemistry::Mol 0.3 not found. Warning: prerequisite Chemistry::Pattern 0.21 not found. Warning: prerequisite Math::VectorReal 1 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::Mok Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Bond::Find 0.21 not found. Warning: prerequisite Chemistry::Canonicalize 0.10 not found. Warning: prerequisite Chemistry::Mol 0.30 not found. Warning: prerequisite Chemistry::Ring 0.15 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::File::SMILES Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::File::SMILES 0.41 not found. Warning: prerequisite Chemistry::Mol 0.24 not found. Warning: prerequisite Chemistry::Pattern 0.25 not found. Warning: prerequisite Chemistry::Ring 0.16 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::File::SMARTS Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::MacroMol 0.05 not found. Warning: prerequisite Chemistry::Mol 0.30 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::File::PDB Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.24 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::Pattern Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::File::PDB 0.21 not found. Warning: prerequisite Chemistry::MacroMol 0.05 not found. Warning: prerequisite Chemistry::Mol 0.24 not found. Warning: prerequisite Chemistry::Pattern 0.20 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::MidasPattern Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.35 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::File::MDLMol Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Bond::Find 0.2 not found. Warning: prerequisite Chemistry::Canonicalize 0.1 not found. Warning: prerequisite Chemistry::Mol 0.25 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::InternalCoords Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.24 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::MacroMol Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.24 not found. Warning: prerequisite Statistics::Regression 0.15 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::Ring Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.24 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::Canonicalize Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.24 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::Bond::Find Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Bond::Find 0.21 not found. Warning: prerequisite Chemistry::Canonicalize 0.10 not found. Warning: prerequisite Chemistry::Mol 0.26 not found. Warning: prerequisite Chemistry::Ring 0.15 not found. Warning: prerequisite Parse::Yapp 0 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::File::SLN Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.24 not found. Warning: prerequisite Chemistry::Pattern 0.20 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::FormulaPattern Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::InternalCoords 0.15 not found. Warning: prerequisite Chemistry::Mol 0.25 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::File::Mopac Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::Mol 0.24 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::File::XYZ Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Chemistry::Isotope Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Warning: prerequisite Chemistry::File::SMILES 0.42 not found. Warning: prerequisite Chemistry::Mol 0.26 not found. Warning: prerequisite Chemistry::Pattern 0.25 not found. Generating a Unix-style Makefile Writing Makefile for Chemistry::Reaction Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Math::VectorReal Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Statistics::Regression Writing MYMETA.yml and MYMETA.json Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Parse::Yapp Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for PerlMol Writing MYMETA.yml and MYMETA.json make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500' cp PerlMol.pm blib/lib/PerlMol.pm make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-VRML-0.10' cp lib/Chemistry/File/VRML.pm ../blib/lib/Chemistry/File/VRML.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-VRML-0.10' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-3DBuilder-0.10' cp lib/Chemistry/3DBuilder.pm ../blib/lib/Chemistry/3DBuilder.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-3DBuilder-0.10' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Mol-0.35' cp File.pm ../blib/lib/Chemistry/File.pm cp Atom.pm ../blib/lib/Chemistry/Atom.pm cp Obj.pm ../blib/lib/Chemistry/Obj.pm cp File/Formula.pm ../blib/lib/Chemistry/File/Formula.pm cp Tutorial.pod ../blib/lib/Chemistry/Tutorial.pod cp Bond.pm ../blib/lib/Chemistry/Bond.pm cp File/Dumper.pm ../blib/lib/Chemistry/File/Dumper.pm cp Mol.pm ../blib/lib/Chemistry/Mol.pm Manifying 8 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Mol-0.35' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Mok-0.25' cp lib/Chemistry/Mok.pm ../blib/lib/Chemistry/Mok.pm cp mok ../blib/script/mok "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- ../blib/script/mok Manifying 1 pod document Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Mok-0.25' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SMILES-0.44' cp write.pl ../blib/lib/Chemistry/File/write.pl cp SMILES.pm ../blib/lib/Chemistry/File/SMILES.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SMILES-0.44' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SMARTS-0.22' cp SMARTS.pm ../blib/lib/Chemistry/File/SMARTS.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SMARTS-0.22' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-PDB-0.21' cp PDB.pm ../blib/lib/Chemistry/File/PDB.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-PDB-0.21' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Pattern-0.26' cp Pattern/Bond.pm ../blib/lib/Chemistry/Pattern/Bond.pm cp Pattern.pm ../blib/lib/Chemistry/Pattern.pm cp Pattern/Atom.pm ../blib/lib/Chemistry/Pattern/Atom.pm Manifying 3 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Pattern-0.26' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-MidasPattern-0.11' cp lib/Chemistry/MidasPattern.pm ../blib/lib/Chemistry/MidasPattern.pm cp lib/Chemistry/File/MidasPattern.pm ../blib/lib/Chemistry/File/MidasPattern.pm Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-MidasPattern-0.11' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-MDLMol-0.20' cp SDF.pm ../blib/lib/Chemistry/File/SDF.pm cp MDLMol.pm ../blib/lib/Chemistry/File/MDLMol.pm Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-MDLMol-0.20' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-InternalCoords-0.18' cp InternalCoords.pm ../blib/lib/Chemistry/InternalCoords.pm cp InternalCoords/Builder.pm ../blib/lib/Chemistry/InternalCoords/Builder.pm Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-InternalCoords-0.18' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-MacroMol-0.06' cp Domain.pm ../blib/lib/Chemistry/Domain.pm cp MacroMol.pm ../blib/lib/Chemistry/MacroMol.pm Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-MacroMol-0.06' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Ring-0.19' cp lib/Chemistry/Ring/Find.pm ../blib/lib/Chemistry/Ring/Find.pm cp lib/Chemistry/Ring.pm ../blib/lib/Chemistry/Ring.pm Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Ring-0.19' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Canonicalize-0.10' cp Canonicalize.pm ../blib/lib/Chemistry/Canonicalize.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Canonicalize-0.10' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Bond-Find-0.21' cp Find.pm ../blib/lib/Chemistry/Bond/Find.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Bond-Find-0.21' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SLN-0.11' cp lib/Chemistry/File/SLN.pm ../blib/lib/Chemistry/File/SLN.pm cp lib/Chemistry/File/SLN/Parser.pm ../blib/lib/Chemistry/File/SLN/Parser.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SLN-0.11' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-FormulaPattern-0.10' cp lib/Chemistry/File/FormulaPattern.pm ../blib/lib/Chemistry/File/FormulaPattern.pm cp lib/Chemistry/FormulaPattern.pm ../blib/lib/Chemistry/FormulaPattern.pm Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-FormulaPattern-0.10' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-Mopac-0.15' cp Mopac.pm ../blib/lib/Chemistry/File/Mopac.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-Mopac-0.15' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-XYZ-0.11' cp XYZ.pm ../blib/lib/Chemistry/File/XYZ.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-XYZ-0.11' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Isotope-0.11' cp lib/Chemistry/Isotope.pm ../blib/lib/Chemistry/Isotope.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Isotope-0.11' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Reaction-0.02' cp lib/Chemistry/Reaction.pm ../blib/lib/Chemistry/Reaction.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Reaction-0.02' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Math-VectorReal-1.02' cp synopsis.pl ../blib/lib/Math/synopsis.pl cp VectorReal.pm ../blib/lib/Math/VectorReal.pm cp vector_test.pl ../blib/lib/Math/vector_test.pl cp matrix_test.pl ../blib/lib/Math/matrix_test.pl Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Math-VectorReal-1.02' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Statistics-Regression-0.15' cp Regression.pm ../blib/lib/Statistics/Regression.pm Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Statistics-Regression-0.15' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Parse-Yapp-1.05' cp lib/Parse/Yapp/Lalr.pm ../blib/lib/Parse/Yapp/Lalr.pm cp lib/Parse/Yapp/Parse.pm ../blib/lib/Parse/Yapp/Parse.pm cp lib/Parse/Yapp/Output.pm ../blib/lib/Parse/Yapp/Output.pm cp lib/Parse/Yapp/Options.pm ../blib/lib/Parse/Yapp/Options.pm cp lib/Parse/Yapp/Driver.pm ../blib/lib/Parse/Yapp/Driver.pm cp lib/Parse/Yapp/Grammar.pm ../blib/lib/Parse/Yapp/Grammar.pm cp lib/Parse/Yapp.pm ../blib/lib/Parse/Yapp.pm cp yapp ../blib/script/yapp "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- ../blib/script/yapp Manifying 1 pod document Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Parse-Yapp-1.05' Manifying 1 pod document make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500' make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-VRML-0.10' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-VRML-0.10' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-3DBuilder-0.10' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-3DBuilder-0.10' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Mol-0.35' Manifying 8 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Mol-0.35' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Mok-0.25' Manifying 1 pod document Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Mok-0.25' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SMILES-0.44' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SMILES-0.44' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SMARTS-0.22' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SMARTS-0.22' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-PDB-0.21' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-PDB-0.21' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Pattern-0.26' Manifying 3 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Pattern-0.26' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-MidasPattern-0.11' Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-MidasPattern-0.11' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-MDLMol-0.20' Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-MDLMol-0.20' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-InternalCoords-0.18' Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-InternalCoords-0.18' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-MacroMol-0.06' Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-MacroMol-0.06' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Ring-0.19' Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Ring-0.19' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Canonicalize-0.10' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Canonicalize-0.10' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Bond-Find-0.21' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Bond-Find-0.21' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SLN-0.11' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-SLN-0.11' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-FormulaPattern-0.10' Manifying 2 pod documents make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-FormulaPattern-0.10' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-Mopac-0.15' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-Mopac-0.15' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-XYZ-0.11' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-File-XYZ-0.11' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Isotope-0.11' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Isotope-0.11' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Reaction-0.02' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Chemistry-Reaction-0.02' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Math-VectorReal-1.02' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Math-VectorReal-1.02' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Statistics-Regression-0.15' Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Statistics-Regression-0.15' make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Parse-Yapp-1.05' Manifying 1 pod document Manifying 1 pod document make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500/Parse-Yapp-1.05' Manifying 1 pod document Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/PerlMol.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/3DBuilder.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Atom.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Bond.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Canonicalize.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Domain.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/FormulaPattern.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/InternalCoords.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Isotope.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/MacroMol.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/MidasPattern.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Mok.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Mol.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Obj.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Pattern.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Reaction.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Ring.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Tutorial.pod Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Bond/Find.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/Dumper.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/Formula.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/FormulaPattern.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/MDLMol.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/MidasPattern.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/Mopac.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/PDB.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/SDF.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/SLN.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/SMARTS.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/SMILES.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/VRML.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/write.pl Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/XYZ.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/File/SLN/Parser.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/InternalCoords/Builder.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Pattern/Atom.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Pattern/Bond.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Chemistry/Ring/Find.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Math/matrix_test.pl Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Math/synopsis.pl Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Math/VectorReal.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Math/vector_test.pl Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Parse/Yapp.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Parse/Yapp/Driver.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Parse/Yapp/Grammar.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Parse/Yapp/Lalr.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Parse/Yapp/Options.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Parse/Yapp/Output.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Parse/Yapp/Parse.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/share/perl/5.22.1/Statistics/Regression.pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man1/mok.1p Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man1/yapp.1p Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::3DBuilder.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Atom.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Bond.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Bond::Find.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Canonicalize.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Domain.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::Dumper.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::Formula.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::FormulaPattern.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::MDLMol.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::MidasPattern.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::Mopac.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::PDB.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::SDF.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::SLN.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::SMARTS.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::SMILES.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::VRML.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::File::XYZ.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::FormulaPattern.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::InternalCoords.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::InternalCoords::Builder.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Isotope.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::MacroMol.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::MidasPattern.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Mok.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Mol.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Obj.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Pattern.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Pattern::Atom.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Pattern::Bond.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Reaction.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Ring.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Ring::Find.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Chemistry::Tutorial.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Math::VectorReal.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Parse::Yapp.3 Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/PerlMol.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/man/man3/Statistics::Regression.3pm Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/bin/mok Installing /mnt/c/Users/Alen/Documents/Research/amber18/lib/perl/bin/yapp Appending installation info to /mnt/c/Users/Alen/Documents/Research/amber18//lib/perl//lib/x86_64-linux-gnu/perl/5.22.1/perllocal.pod make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW/additional_libs/PerlMol-0.3500' cp -f /mnt/c/Users/Alen/Documents/Research/amber18//AmberTools/src/FEW/FEW.pl /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/FEW' (cd amberlite && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/amberlite' /mnt/c/Users/Alen/Documents/Research/amber18//bin/nab -o /mnt/c/Users/Alen/Documents/Research/amber18//bin/ffgbsa ffgbsa.nab /mnt/c/Users/Alen/Documents/Research/amber18//bin/nab -o /mnt/c/Users/Alen/Documents/Research/amber18//bin/minab minab.nab /mnt/c/Users/Alen/Documents/Research/amber18//bin/nab -o /mnt/c/Users/Alen/Documents/Research/amber18//bin/mdnab mdnab.nab (if [ "no" = "no" ]; then \         /mnt/c/Users/Alen/Documents/Research/amber18//bin/amber.python setup.py install -f --prefix=/mnt/c/Users/Alen/Documents/Research/amber18/ ;\ fi;\ ) running install running build running build_scripts creating build creating build/scripts-2.7 copying and adjusting pymdpbsa -> build/scripts-2.7 copying and adjusting pytleap -> build/scripts-2.7 running install_scripts copying build/scripts-2.7/pymdpbsa -> /mnt/c/Users/Alen/Documents/Research/amber18//bin copying build/scripts-2.7/pytleap -> /mnt/c/Users/Alen/Documents/Research/amber18//bin changing mode of /mnt/c/Users/Alen/Documents/Research/amber18//bin/pymdpbsa to 777 changing mode of /mnt/c/Users/Alen/Documents/Research/amber18//bin/pytleap to 777 running install_egg_info Writing /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/AmberLite-16.0-py2.7.egg-info make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/amberlite' (cd paramfit && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/paramfit' [PARAMFIT]  CC calc_r_squared.c [PARAMFIT]  CC create_input.c [PARAMFIT]  CC defaults.c [PARAMFIT]  CC elements.c [PARAMFIT]  CC error_messages.c [PARAMFIT]  CC eval_amber_std.c [PARAMFIT]  CC file_io.c file_io.c: In function ‘read_job_control_file’: file_io.c:91:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, longest_line+1, fptr);      ^ file_io.c: In function ‘read_parameter_file_v2’: file_io.c:166:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, 127, fptr);      ^ file_io.c:174:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line,127,fptr);    ^ file_io.c:195:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line,127,fptr);      ^ file_io.c:200:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, 127, fptr);      ^ file_io.c:208:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line, 127, fptr);    ^ file_io.c:231:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line,127,fptr);      ^ file_io.c:236:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line, 127, fptr);      ^ file_io.c:244:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line,127,fptr);    ^ file_io.c:272:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line,127,fptr);      ^ file_io.c: In function ‘read_parameter_file’: file_io.c:309:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(line,127,fptr);    ^ file_io.c:325:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line,127,fptr);      ^ file_io.c:341:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(line,127,fptr);      ^ file_io.c:361:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]        fgets(line,127,fptr);        ^ [PARAMFIT]  CC fitting_control.c [PARAMFIT]  CC help_functions.c [PARAMFIT]  CC mem_alloc.c mem_alloc.c: In function ‘alloc_coords’: mem_alloc.c:229:12: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]      printf("ERROR! Failed to allocate %d bytes for coords_data\n",c->num_coords*sizeof(coords_struct));             ^ [PARAMFIT]  CC misc_utils.c [PARAMFIT]  CC options_summary.c [PARAMFIT]  CC parameter_optimiser.c [PARAMFIT]  CC param_summary.c [PARAMFIT]  CC print_program_info.c [PARAMFIT]  CC process_command_line.c [PARAMFIT]  CC process_job_control_setting.c [PARAMFIT]  CC process_prmtop.c process_prmtop.c: In function ‘process_single_prmtop’: process_prmtop.c:314:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]        scanf("%c",&response);        ^ process_prmtop.c:323:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]          scanf("%c", &response);          ^ process_prmtop.c:330:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]          scanf("%c", &response);          ^ process_prmtop.c:339:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]        scanf("%c",&response);        ^ process_prmtop.c:346:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]          scanf("%c", &response);          ^ process_prmtop.c:353:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]          scanf("%c", &response);          ^ process_prmtop.c:361:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]        scanf("%c",&response);        ^ process_prmtop.c:370:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]          scanf("%c", &response);          ^ process_prmtop.c:377:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]          scanf("%c", &response);          ^ process_prmtop.c:384:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]          scanf("%c", &response);          ^ process_prmtop.c:502:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]              scanf("%c",&response);              ^ process_prmtop.c:513:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]              scanf("%c",&response);              ^ process_prmtop.c:615:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]              scanf("%c",&response);              ^ process_prmtop.c:626:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]              scanf("%c",&response);              ^ process_prmtop.c:738:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]              scanf("%c",&response);              ^ process_prmtop.c:751:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]              scanf("%c",&response);              ^ process_prmtop.c:863:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]              scanf("%c",&response);              ^ process_prmtop.c:875:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]              scanf("%c",&response);              ^ process_prmtop.c: In function ‘set_dihedral_fit’: process_prmtop.c:1265:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]          scanf("%c",&response);          ^ process_prmtop.c:1284:11: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]            scanf("%c",&response);            ^ process_prmtop.c:1305:11: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]            scanf("%c",&response);            ^ [PARAMFIT]  CC read_prmtop.c read_prmtop.c: In function ‘read_single_prmtop’: read_prmtop.c:273:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NTOTAT);    ^ read_prmtop.c:274:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NTYPES);    ^ read_prmtop.c:277:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NBONH);  /*Number of bonds involving Hydrogen*/    ^ read_prmtop.c:278:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NBONA);  /*Number of bonds not involving Hydrogen*/    ^ read_prmtop.c:281:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NTHETH);  /*Number of angles involving Hydrogen*/    ^ read_prmtop.c:282:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NTHETA);  /*Number of angles not involving Hydrogen*/    ^ read_prmtop.c:285:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NPHIH);  /*Number of dihedrals involving Hydrogen*/    ^ read_prmtop.c:286:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NPHIA);  /*Number of dihedrals not involving Hydrogen*/    ^ read_prmtop.c:289:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->JHPARM);    ^ read_prmtop.c:290:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->JPARM);    ^ read_prmtop.c:291:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NEXT);    ^ read_prmtop.c:292:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NTOTRS);    ^ read_prmtop.c:293:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MBONA);    ^ read_prmtop.c:294:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MTHETS);    ^ read_prmtop.c:295:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MPHIA);    ^ read_prmtop.c:297:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MUMBND);  /*Number of unique bond types*/    ^ read_prmtop.c:300:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MUMANG);  /*Number of unique angle types*/    ^ read_prmtop.c:303:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MPTRA);  /*Number of unique dihedral types*/    ^ read_prmtop.c:306:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NATYP);    ^ read_prmtop.c:307:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NHB);    ^ read_prmtop.c:308:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->IFPERT);    ^ read_prmtop.c:309:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NBPER);    ^ read_prmtop.c:310:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NGPER);    ^ read_prmtop.c:311:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NDPER);    ^ read_prmtop.c:312:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MBPER);    ^ read_prmtop.c:313:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MGPER);    ^ read_prmtop.c:314:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->MDPER);    ^ read_prmtop.c:315:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->IFBOX);    ^ read_prmtop.c:316:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NMXRS);    ^ read_prmtop.c:317:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->IFCAP);    ^ read_prmtop.c:318:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]    fscanf(fptr,"%d",&parm_data->NUMEXTRA);    ^ [PARAMFIT]  CC simplex.c [PARAMFIT]  CC write_input.c write_input.c: In function ‘write_input_gaussian’: write_input.c:62:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]      fread(buffer, size, 1, header);      ^ write_input.c: In function ‘write_input_gamess’: write_input.c:386:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]      fread(buffer, size, 1, header);      ^ [PARAMFIT]  CC genetic_algorithm.c [PARAMFIT]  CC bounds_check.c [PARAMFIT]  CC eval_amber_forces.c [PARAMFIT]  CC dihedral_fitting.c [PARAMFIT]  CC wizard.c wizard.c: In function ‘job_control_wizard’: wizard.c:40:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(save, 100, stdin);    ^ wizard.c:83:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(save, 100, stdin);      ^ wizard.c:87:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]        fgets(save, 100, stdin);        ^ wizard.c:99:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(save, 100, stdin);      ^ wizard.c:103:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]        fgets(save, 100,stdin);        ^ wizard.c:112:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(save, 100, stdin);      ^ wizard.c:116:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]        fgets(save, 100, stdin);        ^ wizard.c:147:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(save, 100, stdin);      ^ wizard.c:151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]        fgets(save, 100, stdin);        ^ wizard.c:175:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]        fgets(save, 100, stdin);        ^ wizard.c:179:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]          fgets(save, 100, stdin);          ^ wizard.c:257:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]       fgets(save, 100, stdin);       ^ wizard.c:261:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]       fgets(save, 100,stdin);       ^ wizard.c:270:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]       fgets(save, 100, stdin);       ^ wizard.c:274:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]         fgets(save, 100, stdin);         ^ wizard.c:358:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]     fgets(save, 100, stdin);     ^ wizard.c:362:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]       fgets(save, 100, stdin);       ^ wizard.c:374:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]     fgets(save, 100, stdin);     ^ wizard.c:378:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]       fgets(save, 100, stdin);       ^ wizard.c: In function ‘get_option’: wizard.c:418:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(raw, 10, stdin);    ^ wizard.c:425:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(raw, 10, stdin);      ^ wizard.c: In function ‘get_float’: wizard.c:439:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]    fgets(raw, 100, stdin);    ^ wizard.c:445:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]      fgets(raw, 100, stdin);      ^ [PARAMFIT]  CC read_mdcrd.c [PARAMFIT]  CC read_energy.c [PARAMFIT]  CC paramfit /bin/mv paramfit /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/paramfit' (cd cphstats && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cphstats' [CPHSTATS]  CXX main.cpp [CPHSTATS]  CXX cpin.cpp [CPHSTATS]  FC parse_cpin.F90 [CPHSTATS]  CXX string_manip.cpp [CPHSTATS]  CXX cloptions.cpp [CPHSTATS]  CXX test.cpp [CPHSTATS]  CXX cpout.cpp [CPHSTATS]  CXX prottraj.cpp [CPHSTATS]  CXX utilities.cpp [CPHSTATS]  CXX conprob.cpp [CPHSTATS]  CXX cphstats [CPHSTATS]  CXX main.cpp [CPHSTATS]  CXX cpin.cpp [CPHSTATS]  FC parse_cpin.F90 [CPHSTATS]  CXX string_manip.cpp [CPHSTATS]  CXX cloptions.cpp [CPHSTATS]  CXX test.cpp [CPHSTATS]  CXX cpout.cpp [CPHSTATS]  CXX prottraj.cpp [CPHSTATS]  CXX utilities.cpp [CPHSTATS]  CXX conprob.cpp [CPHSTATS]  CXX cestats /bin/mv cphstats /mnt/c/Users/Alen/Documents/Research/amber18//bin /bin/mv cestats /mnt/c/Users/Alen/Documents/Research/amber18//bin make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cphstats' (cd nfe-umbrella-slice && make install) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nfe-umbrella-slice' [NFE]  CXX umbrella.cc [NFE]  CXX dimension.cc [NFE]  CXX utils.cc [NFE]  CXX main.cc [NFE]  CXX nfe-umbrella-slice make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/nfe-umbrella-slice' (if [ "no" = "no" ]; then \         make python_serial ;\ fi;\ ) make[2]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src' (cd parmed && PYTHONPATH=/mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages /mnt/c/Users/Alen/Documents/Research/amber18//bin/amber.python setup.py install -f --prefix=/mnt/c/Users/Alen/Documents/Research/amber18/ > build.log) /mnt/c/Users/Alen/Documents/Research/amber18/miniconda/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_suite'   warnings.warn(msg) cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ (cd mmpbsa_py && make install) make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/mmpbsa_py' /mnt/c/Users/Alen/Documents/Research/amber18//bin/nab -o /mnt/c/Users/Alen/Documents/Research/amber18//bin/mmpbsa_py_nabnmode mmpbsa_entropy.nab /mnt/c/Users/Alen/Documents/Research/amber18//bin/nab -o /mnt/c/Users/Alen/Documents/Research/amber18//bin/mmpbsa_py_energy mmpbsa_energy.nab /mnt/c/Users/Alen/Documents/Research/amber18//bin/amber.python setup.py install -f --prefix=/mnt/c/Users/Alen/Documents/Research/amber18/ --install-scripts=/mnt/c/Users/Alen/Documents/Research/amber18//bin running install running build running build_py creating build creating build/lib creating build/lib/MMPBSA_mods copying MMPBSA_mods/alamdcrd.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/amber_outputs.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/API.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/calculation.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/commandlineparser.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/createinput.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/exceptions.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/fake_mpi.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/findprogs.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/infofile.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/input_parser.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/main.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/make_trajs.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/output_file.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/parm_setup.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/timer.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/utils.py -> build/lib/MMPBSA_mods copying MMPBSA_mods/__init__.py -> build/lib/MMPBSA_mods running build_scripts creating build/scripts-2.7 copying and adjusting MMPBSA.py -> build/scripts-2.7 copying and adjusting ante-MMPBSA.py -> build/scripts-2.7 running install_lib creating /mnt/c/Users/Alen/Documents/Research/amber18/lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/alamdcrd.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/amber_outputs.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/API.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/calculation.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/commandlineparser.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/createinput.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/exceptions.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/fake_mpi.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/findprogs.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/infofile.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/input_parser.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/main.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/make_trajs.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/output_file.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/parm_setup.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/timer.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/utils.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods copying build/lib/MMPBSA_mods/__init__.py -> /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/alamdcrd.py to alamdcrd.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/amber_outputs.py to amber_outputs.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/API.py to API.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/calculation.py to calculation.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/commandlineparser.py to commandlineparser.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/createinput.py to createinput.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/exceptions.py to exceptions.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/fake_mpi.py to fake_mpi.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/findprogs.py to findprogs.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/infofile.py to infofile.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/input_parser.py to input_parser.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/main.py to main.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/make_trajs.py to make_trajs.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/output_file.py to output_file.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/parm_setup.py to parm_setup.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/timer.py to timer.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/utils.py to utils.pyc byte-compiling /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA_mods/__init__.py to __init__.pyc running install_scripts copying build/scripts-2.7/ante-MMPBSA.py -> /mnt/c/Users/Alen/Documents/Research/amber18//bin copying build/scripts-2.7/MMPBSA.py -> /mnt/c/Users/Alen/Documents/Research/amber18//bin changing mode of /mnt/c/Users/Alen/Documents/Research/amber18//bin/ante-MMPBSA.py to 777 changing mode of /mnt/c/Users/Alen/Documents/Research/amber18//bin/MMPBSA.py to 777 running install_egg_info Writing /mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages/MMPBSA.py-16.0-py2.7.egg-info make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/mmpbsa_py' (cd pysander && make install > build.log) In file included from sander/src/pysandermodule.c:22:0: /mnt/c/Users/Alen/Documents/Research/amber18/include/sander.h:401:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]  static inline int is_setup() {                    ^ In file included from sanderles/src/pysandermodule.c:22:0: /mnt/c/Users/Alen/Documents/Research/amber18/include/sander.h:401:19: warning: function declaration isn’t a prototype [-Wstrict-prototypes]  static inline int is_setup() {                    ^ (cd pymsmt && PYTHONPATH=/mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages /mnt/c/Users/Alen/Documents/Research/amber18//bin/amber.python setup.py install -f --prefix=/mnt/c/Users/Alen/Documents/Research/amber18/ > build.log ) make libcpptraj make[3]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src' (cd cpptraj && make libcpptraj) make[4]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj' cd src && make libcpptraj make[5]: Entering directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src' Skipping bundled ARPACK build g++ -shared -o "/mnt/c/Users/Alen/Documents/Research/amber18//lib"/libcpptraj.so SpaceGroup.o Action.o ActionFrameCounter.o ActionList.o Action_Align.o Action_Angle.o Action_AreaPerMol.o Action_AtomMap.o Action_AtomicCorr.o Action_AtomicFluct.o Action_AutoImage.o Action_Average.o Action_Bounds.o Action_Box.o Action_Center.o Action_Channel.o Action_CheckChirality.o Action_CheckStructure.o Action_Closest.o Action_ClusterDihedral.o Action_Contacts.o Action_CreateCrd.o Action_CreateReservoir.o Action_DNAionTracker.o Action_DSSP.o Action_Density.o Action_Diffusion.o Action_Dihedral.o Action_Dipole.o Action_Distance.o Action_DistRmsd.o Action_Energy.o Action_FilterByData.o Action_FixAtomOrder.o Action_FixImagedBonds.o Action_GIST.o Action_Grid.o Action_GridFreeEnergy.o Action_HydrogenBond.o Action_Image.o Action_InfraredSpectrum.o Action_Jcoupling.o Action_LESsplit.o Action_LIE.o Action_LipidOrder.o Action_MakeStructure.o Action_Mask.o Action_Matrix.o Action_MinImage.o Action_Molsurf.o Action_MultiDihedral.o Action_MultiVector.o Action_NAstruct.o Action_NativeContacts.o Action_NMRrst.o Action_OrderParameter.o Action_Outtraj.o Action_PairDist.o Action_Pairwise.o Action_Principal.o Action_Projection.o Action_Pucker.o Action_Radgyr.o Action_Radial.o Action_RandomizeIons.o Action_Remap.o Action_ReplicateCell.o Action_Rmsd.o Action_Rotate.o Action_RunningAvg.o Action_STFC_Diffusion.o Action_Scale.o Action_SetVelocity.o Action_Spam.o Action_Strip.o Action_Surf.o Action_SymmetricRmsd.o Action_Temperature.o Action_Translate.o Action_Unstrip.o Action_Unwrap.o Action_Vector.o Action_VelocityAutoCorr.o Action_Volmap.o Action_Volume.o Action_Watershell.o Action_XtalSymm.o AnalysisList.o Analysis_AmdBias.o Analysis_AutoCorr.o Analysis_Average.o Analysis_Clustering.o Analysis_Corr.o Analysis_ConstantPHStats.o Analysis_CrankShaft.o Analysis_CrdFluct.o Analysis_CrossCorr.o Analysis_CurveFit.o Analysis_Divergence.o Analysis_FFT.o Analysis_HausdorffDistance.o Analysis_Hist.o Analysis_Integrate.o Analysis_IRED.o Analysis_KDE.o Analysis_Lifetime.o Analysis_LowestCurve.o Analysis_Matrix.o Analysis_MeltCurve.o Analysis_Modes.o Analysis_Multicurve.o Analysis_MultiHist.o Analysis_Overlap.o Analysis_PhiPsi.o Analysis_Regression.o Analysis_RemLog.o Analysis_Rms2d.o Analysis_RmsAvgCorr.o Analysis_Rotdif.o Analysis_RunningAvg.o Analysis_Spline.o Analysis_State.o Analysis_Statistics.o Analysis_TI.o Analysis_Timecorr.o Analysis_VectorMath.o Analysis_Wavelet.o ArgList.o Array1D.o AssociatedData.o Atom.o AtomMap.o AtomMask.o AtomType.o AtomTypeArray.o AxisType.o BondSearch.o Box.o BufferedFrame.o BufferedLine.o ByteRoutines.o CharMask.o CIFfile.o ClusterDist.o ClusterList.o ClusterMap.o ClusterMatrix.o ClusterNode.o ClusterSieve.o Cluster_DBSCAN.o Cluster_DPeaks.o Cluster_HierAgglo.o Cluster_Kmeans.o Cluster_ReadInfo.o Cmd.o CmdInput.o CmdList.o ComplexArray.o Constraints.o Control.o CoordinateInfo.o Corr.o Cph.o CpptrajFile.o CpptrajState.o CpptrajStdio.o CurveFit.o DataFile.o DataFileList.o DataIO.o DataIO_CCP4.o DataIO_CharmmFastRep.o DataIO_CharmmOutput.o DataIO_CharmmRepLog.o DataIO_CharmmRtfPrm.o DataIO_Cmatrix.o DataIO_Cpout.o DataIO_Evecs.o DataIO_Gnuplot.o DataIO_Grace.o DataIO_OpenDx.o DataIO_Mdout.o DataIO_NC_Cmatrix.o DataIO_RemLog.o DataIO_Std.o DataIO_VecTraj.o DataIO_Xplor.o DataIO_XVG.o DataSet.o DataSetList.o DataSet_1D.o DataSet_3D.o DataSet_Cmatrix.o DataSet_Cmatrix_DISK.o DataSet_Cmatrix_MEM.o DataSet_Cmatrix_NOMEM.o DataSet_Coords.o DataSet_Coords_CRD.o DataSet_Coords_REF.o DataSet_Coords_TRJ.o DataSet_GridDbl.o DataSet_GridFlt.o DataSet_Mat3x3.o DataSet_MatrixDbl.o DataSet_MatrixFlt.o DataSet_Mesh.o DataSet_Modes.o DataSet_Parameters.o DataSet_pH.o DataSet_PHREMD_Explicit.o DataSet_PHREMD_Implicit.o DataSet_RemLog.o DataSet_Topology.o DataSet_Vector.o DataSet_double.o DataSet_float.o DataSet_integer_disk.o DataSet_integer_mem.o DataSet_string.o Deprecated.o DihedralSearch.o DistRoutines.o Energy.o EnsembleIn.o EnsembleIn_Multi.o EnsembleIn_Single.o EnsembleNavigator.o EnsembleOut.o EnsembleOut_Multi.o EnsembleOut_Single.o EnsembleOutList.o Ewald.o Ewald_ParticleMesh.o Ewald_Regular.o Exec_Analyze.o Exec_Calc.o Exec_CatCrd.o Exec_Change.o Exec_ClusterMap.o Exec_CombineCoords.o Exec_Commands.o Exec_CompareTop.o Exec_CrdAction.o Exec_CrdOut.o Exec_CreateSet.o Exec_DataFile.o Exec_DataFilter.o Exec_DataSetCmd.o Exec_GenerateAmberRst.o Exec_Help.o Exec_LoadCrd.o Exec_LoadTraj.o Exec_ParallelAnalysis.o Exec_ParmBox.o Exec_ParmSolvent.o Exec_ParmStrip.o Exec_ParmWrite.o Exec_PermuteDihedrals.o Exec_Precision.o Exec_PrintData.o Exec_ReadData.o Exec_ReadEnsembleData.o Exec_ReadInput.o Exec_RotateDihedral.o Exec_RunAnalysis.o Exec_ScaleDihedralK.o Exec_SequenceAlign.o Exec_SortEnsembleData.o Exec_SplitCoords.o Exec_System.o Exec_Top.o Exec_Traj.o Exec_UpdateParameters.o Exec_ViewRst.o File_TempName.o FileIO_Bzip2.o FileIO_Gzip.o FileIO_Mpi.o FileIO_MpiShared.o FileIO_Std.o FileName.o FileTypes.o Frame.o GridAction.o HistBin.o Hungarian.o ImageRoutines.o InputTrajCommon.o KDE.o MapAtom.o MaskArray.o MaskToken.o Matrix_3x3.o MetaData.o Mol.o Mol2File.o NameType.o NC_Cmatrix.o NC_Routines.o NetcdfFile.o OutputTrajCommon.o PDBfile.o PairList.o Parallel.o ParallelNetcdf.o ParmFile.o Parm_Amber.o Parm_CharmmPsf.o Parm_CIF.o Parm_Gromacs.o Parm_Mol2.o Parm_PDB.o Parm_SDF.o Parm_Tinker.o ProgressBar.o ProgressTimer.o PubFFT.o Random.o Range.o RPNcalc.o ReferenceAction.o RemdReservoirNC.o Residue.o SDFfile.o SimplexMin.o Spline.o StringRoutines.o StructureCheck.o StructureMapper.o SymmetricRmsdCalc.o TextFormat.o Timer.o TinkerFile.o TopInfo.o Topology.o TorsionRoutines.o Traj_AmberCoord.o Traj_AmberNetcdf.o Traj_AmberRestart.o Traj_AmberRestartNC.o Traj_Binpos.o Traj_CharmmCor.o Traj_CharmmDcd.o Traj_CharmmRestart.o Traj_CIF.o Traj_Conflib.o Traj_GmxTrX.o Traj_GmxXtc.o Traj_Gro.o Traj_Mol2File.o Traj_NcEnsemble.o Traj_PDBfile.o Traj_SDF.o Traj_SQM.o Traj_Tinker.o Traj_XYZ.o TrajectoryFile.o TrajectoryIO.o TrajFrameCounter.o TrajinList.o Trajin_Multi.o Trajin_Single.o TrajIOarray.o Trajout_Single.o TrajoutList.o VariableArray.o Vec3.o ViewRst.o molsurf.o Action_Esander.LIBCPPTRAJ.o Command.LIBCPPTRAJ.o Cpptraj.LIBCPPTRAJ.o Energy_Sander.LIBCPPTRAJ.o ReadLine.LIBCPPTRAJ.o   /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libarpack.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/liblapack.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libblas.a /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libfftw3.a -lgfortran /mnt/c/Users/Alen/Documents/Research/amber18//lib64/libnetcdf.a -lbz2 -lz xdrfile/libxdrfile.a make[5]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj/src' make[4]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src/cpptraj' make[3]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src' (cd pytraj && AMBERHOME=/mnt/c/Users/Alen/Documents/Research/amber18/ AMBER_PREFIX=/mnt/c/Users/Alen/Documents/Research/amber18/ PYTHONPATH=/mnt/c/Users/Alen/Documents/Research/amber18//lib/python2.7/site-packages /mnt/c/Users/Alen/Documents/Research/amber18//bin/amber.python setup.py install -f --prefix=/mnt/c/Users/Alen/Documents/Research/amber18/ --disable-openmp > build.log ) Traceback (most recent call last):   File "setup.py", line 18, in     from setuptools import setup, Extension ImportError: No module named setuptools Makefile:505: recipe for target 'pytraj' failed make[2]: *** [pytraj] Error 1 make[2]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src' Makefile:26: recipe for target 'serial' failed make[1]: *** [serial] Error 2 make[1]: Leaving directory '/mnt/c/Users/Alen/Documents/Research/amber18/AmberTools/src' Makefile:7: recipe for target 'install' failed make: *** [install] Error 2 alen@DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$