Re: [AMBER] Problem in extracting pdb file from mdcrd file

From: Daniel Roe <>
Date: Wed, 16 Oct 2019 10:48:28 -0400


The default mode of PDB 'trajout' is to write multiple models to the
same file (the 'model' keyword). Specify 'multi' if you want each
frame to a separate file. See the manual for full details.


On Mon, Oct 14, 2019 at 4:07 AM Airy Sanjeev <> wrote:
> Dear Amber User,
> I tried to extract pdb file from a single mdcrd file but could not get
> multiple pdb files instead I got only one pdb file. I actually need 50 pdb
> files atleast. The trajectory file is 100 ns. A total of 50000 frames are
> there and I have used ntwx=1000. This was my input file. Kindly help me in
> this regard.
> --
> with best regards,
> Airy Sanjeev, PhD
> Post Doctoral Fellow
> Indian Institute of Technology Guwahati, Guwahati
> Assam-781039, India
> _______________________________________________
> AMBER mailing list

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Received on Wed Oct 16 2019 - 08:00:02 PDT
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