[AMBER] make install errors

From: Alen Ahmetovic <alen2.mail.usf.edu>
Date: Mon, 14 Oct 2019 22:28:33 -0400

Hi all,

I am trying to install Amber and Tools18 on my PC. I am running through
Ubuntu. When doing the installation, I keep getting stuck with the
following error:

make[5]: Leaving directory
make[4]: Leaving directory
make[3]: Leaving directory
(cd pytraj && AMBERHOME=/mnt/c/Users/Alen/Documents/Research/amber18/
/mnt/c/Users/Alen/Documents/Research/amber18//bin/amber.python setup.py
install -f --prefix=/mnt/c/Users/Alen/Documents/Research/amber18/
--disable-openmp > build.log )
Traceback (most recent call last):
  File "setup.py", line 18, in <module>
    from setuptools import setup, Extension
ImportError: No module named setuptools
Makefile:505: recipe for target 'pytraj' failed
make[2]: *** [pytraj] Error 1
make[2]: Leaving directory
Makefile:26: recipe for target 'serial' failed
make[1]: *** [serial] Error 2
make[1]: Leaving directory
Makefile:7: recipe for target 'install' failed
make: *** [install] Error 2

alen.DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ sudo
apt-get install python-setuptools
[sudo] password for alen:
Reading package lists... Done
Building dependency tree
Reading state information... Done
python-setuptools is already the newest version (20.7.0-1).
0 upgraded, 0 newly installed, 0 to remove and 119 not upgraded.

then I try:

alen.DESKTOP-9902UPO:/mnt/c/Users/Alen/Documents/Research/amber18$ python
./setup.py install
python: can't open file './setup.py': [Errno 2] No such file or directory

I have tried to do a clean install and still get the same error. I have
made all of the possible patch updates and relevant program downloads based
off the errors given throughout the process, and I still end up in the same
place. I don't have any coding experience other than what I've learned
using Amber and copy/pasting commands I find online to fix these problems,
otherwise I am totally lost. I added the last two commands to show that I
have the setuptools its telling me I don't have, and the fact that asking
it to specifically download setup.py does not work. What am I missing?

Does setuptools need to be in the proper directory for python within amber
to use it correctly? Currently it's in AMBERHOME/amber18/miniconda3.

Thanks in advance for your help.

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Received on Mon Oct 14 2019 - 19:30:01 PDT
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