[AMBER] could not find vdW (or other) parameters for type for virtually every amino acid atom

From: Dawid das <addiw7.googlemail.com>
Date: Tue, 8 Oct 2019 18:03:59 +0200

Dear Amber Users,

I am trying to generate topology and parameters files for a protein
containing my own amino acid (unit).

I attach my tleap.in, PDB and leap.log files together with some parameter
files I use as the input.

The issue is that I get an error saying that vdW parameters are missing
for virtually every atom even though I can see them correctly defined
in leaprc.ff99SBildn and parm99.dat. What could be the problem?

Best regards,
Dawid Grabarek

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Received on Tue Oct 08 2019 - 09:30:02 PDT
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