Re: [AMBER] I add Ions to the system and they don't show up!!!

From: David Case <>
Date: Wed, 2 Oct 2019 01:07:05 +0000

On Tue, Oct 01, 2019, Parviz Seifpanahi Shabane wrote:

>Probelm is when I make PDB file fron file.crd and by "ambpdb"
>command I can not see any ions when I look at thesysteam by pymol or VMD!!!!
>what is the probelm?

Are the ions actually there in the PDB file? Sometimes the default
options in a visualization program don't show ions.


AMBER mailing list
Received on Tue Oct 01 2019 - 18:30:02 PDT
Custom Search