Re: [AMBER] DNA methylation parameters

From: Zhendong Li <>
Date: Tue, 1 Oct 2019 22:50:20 +0800 (CST)

Thank you very much.

At 2019-09-28 20:49:17, "David Case" <> wrote:
>On Mon, Sep 23, 2019, wrote:
>>I am trying to run MD simulation for methylated DNA/protein
>>system. However, I am having trouble in finding suitable parameters for
>>the methylcytosine (such as residue 5CM in pdb 5ef6). I know there are
>>many modified protein residues parameters for amber, so I want to ask if
>>there are any common modified DNA force filed parameters available, or I
>>need to do it myself?
>Please visit the contributed parameters database:
>and click on the "Nucleic Acids" tab.
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Received on Tue Oct 01 2019 - 08:00:02 PDT
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