Dear Sir
I have followed the tutorial "*A Tutorial on Alchemical Free Energy
Perturbation Calculations in NAMD" section 3 :**Mutation of tyrosine into
alanine"*
http://www.ks.uiuc.edu/Training/Tutorials/namd/FEP/tutorial-FEP.pdf
trying to calculate free energy perturbation for mutating protein.
I don't have idea how create hybrid topology file in amber.
Can you please guide me idea for preparation of topology file.
Best Regards
Aashish
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Received on Mon Sep 16 2019 - 09:00:02 PDT
