[AMBER] Question about unusual RMSD behaviour

From: Amit Kumar <ak543714.gmail.com>
Date: Mon, 16 Sep 2019 18:49:48 +0530

Dear Amber users,
I ran a simulation of a fibrillar protein for few nanosecond (with and
without torsional restraint) using Amber16. I used implicit solvent (igb=5)
results when analysed in terms of RMSD, the RMSD value of the unrestrained
system was higher than the RMSD value of the restrained system. Is it
possible? Can you explain the phenomenon?
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Received on Mon Sep 16 2019 - 06:30:03 PDT
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