Dear Amber users,
I ran a simulation of a fibrillar protein for few nanosecond (with and
without torsional restraint) using Amber16. I used implicit solvent (igb=5)
results when analysed in terms of RMSD, the RMSD value of the unrestrained
system was higher than the RMSD value of the restrained system. Is it
possible? Can you explain the phenomenon?
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Sep 16 2019 - 06:30:03 PDT
