[AMBER] lipid order per leaflet

From: Violeta Burns Casamayor <vb0009.mix.wvu.edu>
Date: Tue, 3 Sep 2019 13:49:08 -0400


I'm trying to calculate the lipid order parameters of OL and of PA
separately and I wanted to split that calculation per leaflet (z>0 or z<0).
however, I can't seem to find the right mask to make it work.

This is what I have so far:
lipidorder out output-OL.dat scd ":OL.C12" ":OL.H2R" ":OL.H2S" ":OL.C13"
":OL.H3R" ":OL.H3S" ":OL.C14" ":OL.H4R" ":OL.H4S" ":OL.C15" ":OL.H5R"
":OL.H5S" ":OL.C16" ":OL.H6R" ":OL.H6S" ":OL.C17" ":OL.H7R" ":OL.H7S"
":OL.C18" ":OL.H8R" ":OL.H8S" ":OL.C19" ":OL.H9R" ":OL.H9R" ":OL.C110"
":OL.H10R" ":OL.H10R" ":OL.C111" ":OL.H11R" ":OL.H11S" ":OL.C112" ":OL.H12R"
":OL.H12S" ":OL.C113" ":OL.H13R" ":OL.H13S" ":OL.C114" ":OL.H14R" ":OL.H14S"
":OL.C115" ":OL.H15R" ":OL.H15S" ":OL.C116" ":OL.H16R" ":OL.H16S" ":OL.C117"
":OL.H17R" ":OL.H17S" ":OL.C118" ":OL.H18R" ":OL.H18S"

Any suggestions?


Violetta Burns
PhD student
Mertz Group
WVU Department of chemistry

"*Every great and deep difficulty bears in itself its own solution. It
forces us to change our thinking in order to find it." - Niels Bohr*

*“You do not really understand something unless you can explain it to your
grandmother.” - Albert Einstein*
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Received on Tue Sep 03 2019 - 11:00:03 PDT
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