[AMBER] Problem with barostat during the production stage (membrane simulation)

From: Maria Bzówka <m.bzowka.tunnelinggroup.pl>
Date: Wed, 17 Jul 2019 15:10:52 +0200

Hi all,

I perform the production stage of the pure POPC bilayer simulation and I
have a problem with a barostat.

I wanted to use MC barostat during the production stage instead of
Berendsen which was used during the equilibration stages (I read that for
production the Berendsen barostat is not entirely correct since this
barostat does not produce the correct canonical distribution), but in my
production output files the pressure value is constantly 0. Below you can
find an example:
 NSTEP = 205000 TIME(PS) = 2635.000 TEMP(K) = 303.09 *PRESS =
  0.0*
 Etot = -28964.2861 EKtot = 21371.4375 EPtot =
 -50335.7236
 BOND = 1899.8493 ANGLE = 7324.5728 DIHED =
 7011.6402
 UB = 2984.2972 IMP = 76.6117 CMAP =
0.0000
 1-4 NB = 1026.6084 1-4 EEL = -14468.8318 VDWAALS =
-1572.3554
 EELEC = -54618.1160 EHBOND = 0.0000 RESTRAINT =
0.0000
 EKCMT = 0.0000 VIRIAL = 0.0000 VOLUME =
 307389.3952
                                                    SURFTEN =
0.0000
                                                    Density =
1.0143

Do you have any solution for this?

I attach my input file for the production stage.

Thank you in advance

Maria


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Received on Wed Jul 17 2019 - 06:30:07 PDT
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