[AMBER] MD Simulation in DMSO

From: Rodriguez, Yoel <yoel.rodriguez.mssm.edu>
Date: Mon, 24 Jun 2019 12:11:53 +0000

Hello Amber community,


I am reaching out to you because I would like to run an MD simulation in DMSO. The system is formed by a small peptide of 4 amino acids bound to small molecule.


Does someone have experience running MD simulation in DMSO? Any suggestion using implicit model to mimic DMSO as a solvent.


Feedback is really appreciated.


Thank you in advance.


Best,

Yoel


Yoel Rodríguez, Ph.D.

CUNY / MSSM
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Received on Mon Jun 24 2019 - 05:30:04 PDT
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