Hi Zhiyi,
I’m not exactly clear what happened to that file. However, we have migrated the functionality of those scripts into a more versatile Python package called pAPRika, which is located here: https://github.com/slochower/paprika <https://github.com/slochower/paprika>. There are some tutorials on the GitHub page, although they don’t cover the same host-guest complex as the AMBER tutorial. We are also in the midst of a refactoring effort that should make it easier to setup these types of calculations. In the meantime, feel free to file an Issue of GitHub if you have any trouble.
> On Jun 4, 2019, at 3:53 AM, Zhiyi Wu <zhiyi.wu.msdtc.ox.ac.uk> wrote:
>
> Hi amber users,
> It seems that the apr_preRun.tar.gz is missing from the amber apr tutorial (http://ambermd.org/tutorials/advanced/tutorial29/APR_section3.html).
> Kind regards,
> Zhiyi Wu
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Received on Wed Jun 19 2019 - 11:30:02 PDT
