If you have them, try to remove the part that compute the bridging h-bonds.
I had the same issue and this worked for me since I was not interested in
computing bridging Hbonds.
Best regards,
Stefano
Il giorno gio 13 giu 2019 alle ore 16:41 somdev pahari <
somdevpahari1.gmail.com> ha scritto:
> Dear AMBER community,
>
> I am using cpptraj.OMP for calculating hbond between lipid and water in my
> Desktop.
> Everything is running good but at the end I get something "Aborted (core
> dumped)"
> message. Though output files are created but do not cover my full
> trajectory.
> The cpptraj.OMP version is V4.14.0 (AmberTools V19.02) OpenMP.
> Here below I attach a file containing the message. Please take a look and
> give me your suggestions. Thanks in advance.
>
> Regards
> Somdev Pahari
> PhD Scholar
> NIT Rourkela
> Rourkela, Odisha
> India
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
________________________________________________________________
Stefano Motta PhD
Email: stefano.motta.unimib.it <s.motta17.campus.unimib.it>
*Field of study:* Molecular Modeling, and Proteins Molecular Dynamics
Università degli Studi di Milano Bicocca
Department of Earth and Environmental Sciences
Piazza dell'Ateneo Nuovo, 1 - 20126, Milano (Italy).
_________________________________________________________________
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jun 13 2019 - 09:00:02 PDT
