Deal all,
I follow the tutorial to build the membrane-water system. And tleap can read the final structure. Then, I put a protein in the membrane-water system (the protien locates in the water not the membrane). And I use chimera to do it. But when I use the tleap to read the complex, it shows:
Error: Comparing atoms
.R<OL 3>.A<C13 11>,
.R<OL 3>.A<H2R 9>,
.R<OL 3>.A<H2S 10>, and
.R<PC 2>.A<C21 41>
to atoms
.R<OL 3>.A<C13 11>,
.R<PA 1>.A<C12 44>,
.R<OL 3>.A<H2S 10>, and
.R<PC 2>.A<C21 41>
This error may be due to faulty Connection atoms.
!FATAL ERROR----------------------------------------
!FATAL: In file [chirality.c], line 142
!FATAL: Message: Atom named C12 from PA did not match !
!
!ABORTING.
I do not understand the information above. It seems that the chimera modified the membrane automatically, and the result is not compatible with tleap. Is there any method or any software can avoid this problem?
Thanks!
xmgign.126.com
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Received on Sun Jun 02 2019 - 21:00:02 PDT
