This script will download and install a version of Python compatible with every component of AmberTools and install all required and optional prerequisites. The Python distribution is downloaded for your operating system from Miniconda. Downloading Python 2.7 Miniconda Detected Linux kernel. Downloading the Linux installer Downloading the latest Miniconda distribution Detected 64-bit Linux --2019-05-28 14:17:56-- https://repo.continuum.io/miniconda/Miniconda2-4.5.12-Linux-x86_64.sh Resolving repo.continuum.io (repo.continuum.io)... 104.18.201.79, 104.18.200.79, 2606:4700::6812:c94f, ... Connecting to repo.continuum.io (repo.continuum.io)|104.18.201.79|:443... connected. 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.......... .......... .......... .......... 33% 60.4M 1s 14800K .......... .......... .......... .......... .......... 33% 72.2M 1s 14850K .......... .......... .......... .......... .......... 34% 78.6M 1s 14900K .......... .......... .......... .......... .......... 34% 97.3M 1s 14950K .......... .......... .......... .......... .......... 34% 88.8M 1s 15000K .......... .......... .......... .......... .......... 34% 97.3M 1s 15050K .......... .......... .......... .......... .......... 34% 96.1M 1s 15100K .......... .......... .......... .......... .......... 34% 94.3M 1s 15150K .......... .......... .......... .......... .......... 34% 45.6M 1s 15200K .......... .......... .......... .......... .......... 34% 53.9M 1s 15250K .......... .......... .......... .......... .......... 34% 41.5M 1s 15300K .......... .......... .......... .......... .......... 35% 69.4M 1s 15350K .......... .......... .......... .......... .......... 35% 82.2M 1s 15400K .......... .......... .......... .......... .......... 35% 55.9M 1s 15450K .......... .......... .......... .......... .......... 35% 64.1M 1s 15500K .......... .......... .......... .......... .......... 35% 55.0M 1s 15550K .......... .......... .......... .......... .......... 35% 38.2M 1s 15600K .......... .......... .......... .......... .......... 35% 47.7M 1s 15650K .......... .......... .......... .......... .......... 35% 43.8M 1s 15700K .......... .......... .......... .......... .......... 35% 52.1M 1s 15750K .......... .......... .......... .......... .......... 36% 47.3M 1s 15800K .......... .......... .......... .......... .......... 36% 60.2M 1s 15850K .......... .......... .......... .......... .......... 36% 60.5M 1s 15900K .......... .......... .......... .......... .......... 36% 60.7M 1s 15950K .......... .......... .......... .......... .......... 36% 50.4M 1s 16000K .......... .......... .......... .......... .......... 36% 62.8M 1s 16050K .......... .......... .......... .......... .......... 36% 60.7M 1s 16100K .......... .......... .......... .......... .......... 36% 61.1M 1s 16150K .......... .......... .......... .......... .......... 36% 55.8M 1s 16200K .......... .......... .......... .......... .......... 37% 59.5M 1s 16250K .......... .......... .......... .......... .......... 37% 65.9M 1s 16300K .......... .......... .......... .......... .......... 37% 47.9M 1s 16350K .......... .......... .......... .......... .......... 37% 46.8M 1s 16400K .......... .......... .......... .......... .......... 37% 61.3M 1s 16450K .......... .......... .......... .......... .......... 37% 59.2M 1s 16500K .......... .......... .......... .......... .......... 37% 64.3M 1s 16550K .......... .......... .......... .......... .......... 37% 47.1M 1s 16600K .......... .......... .......... .......... .......... 38% 61.6M 1s 16650K .......... .......... .......... .......... .......... 38% 57.1M 0s 16700K .......... .......... .......... .......... .......... 38% 55.7M 0s 16750K .......... .......... .......... .......... .......... 38% 46.3M 0s 16800K .......... .......... .......... .......... .......... 38% 64.5M 0s 16850K .......... .......... .......... .......... .......... 38% 63.9M 0s 16900K .......... .......... .......... .......... .......... 38% 55.7M 0s 16950K .......... .......... .......... .......... .......... 38% 6.92M 1s 17000K .......... .......... .......... .......... .......... 38% 55.2M 1s 17050K .......... .......... .......... .......... .......... 39% 57.7M 1s 17100K .......... .......... .......... .......... .......... 39% 61.5M 0s 17150K .......... .......... .......... .......... .......... 39% 49.6M 0s 17200K .......... .......... .......... .......... .......... 39% 51.4M 0s 17250K .......... .......... .......... .......... .......... 39% 56.7M 0s 17300K .......... .......... .......... .......... .......... 39% 60.5M 0s 17350K .......... .......... .......... .......... .......... 39% 45.9M 0s 17400K .......... .......... .......... .......... .......... 39% 56.0M 0s 17450K .......... .......... .......... .......... .......... 39% 78.2M 0s 17500K .......... .......... .......... .......... .......... 40% 79.0M 0s 17550K .......... .......... .......... .......... .......... 40% 66.0M 0s 17600K .......... .......... .......... .......... .......... 40% 77.1M 0s 17650K .......... .......... .......... .......... .......... 40% 77.6M 0s 17700K .......... .......... .......... .......... .......... 40% 79.3M 0s 17750K .......... .......... .......... .......... .......... 40% 71.0M 0s 17800K .......... .......... .......... .......... .......... 40% 78.0M 0s 17850K .......... .......... .......... .......... .......... 40% 78.7M 0s 17900K .......... .......... .......... .......... .......... 40% 76.5M 0s 17950K .......... .......... .......... .......... .......... 41% 62.7M 0s 18000K .......... .......... .......... .......... .......... 41% 77.9M 0s 18050K .......... .......... .......... .......... .......... 41% 75.1M 0s 18100K .......... .......... .......... .......... .......... 41% 73.8M 0s 18150K .......... .......... .......... .......... .......... 41% 67.3M 0s 18200K .......... .......... .......... .......... .......... 41% 112M 0s 18250K .......... .......... .......... .......... .......... 41% 106M 0s 18300K .......... .......... .......... .......... .......... 41% 99.8M 0s 18350K .......... .......... .......... .......... .......... 41% 51.4M 0s 18400K .......... .......... .......... .......... .......... 42% 48.3M 0s 18450K .......... .......... .......... .......... .......... 42% 64.3M 0s 18500K .......... .......... .......... .......... .......... 42% 55.2M 0s 18550K .......... .......... .......... .......... .......... 42% 49.5M 0s 18600K .......... .......... .......... .......... .......... 42% 78.5M 0s 18650K .......... .......... .......... .......... .......... 42% 55.1M 0s 18700K .......... .......... .......... .......... .......... 42% 58.2M 0s 18750K .......... .......... .......... .......... .......... 42% 45.5M 0s 18800K .......... .......... .......... .......... .......... 43% 58.6M 0s 18850K .......... .......... .......... .......... .......... 43% 64.3M 0s 18900K .......... .......... .......... .......... .......... 43% 48.2M 0s 18950K .......... .......... .......... .......... .......... 43% 52.3M 0s 19000K .......... .......... .......... .......... .......... 43% 77.2M 0s 19050K .......... .......... .......... .......... .......... 43% 55.2M 0s 19100K .......... .......... .......... .......... .......... 43% 55.1M 0s 19150K .......... .......... .......... .......... .......... 43% 6.35M 0s 19200K .......... .......... .......... .......... .......... 43% 87.5M 0s 19250K .......... .......... .......... .......... .......... 44% 89.1M 0s 19300K .......... .......... .......... .......... .......... 44% 84.9M 0s 19350K .......... .......... .......... .......... .......... 44% 79.6M 0s 19400K .......... 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54.9M 0s 20750K .......... .......... .......... .......... .......... 47% 51.8M 0s 20800K .......... .......... .......... .......... .......... 47% 61.5M 0s 20850K .......... .......... .......... .......... .......... 47% 61.3M 0s 20900K .......... .......... .......... .......... .......... 47% 61.5M 0s 20950K .......... .......... .......... .......... .......... 47% 54.8M 0s 21000K .......... .......... .......... .......... .......... 48% 64.4M 0s 21050K .......... .......... .......... .......... .......... 48% 69.8M 0s 21100K .......... .......... .......... .......... .......... 48% 54.1M 0s 21150K .......... .......... .......... .......... .......... 48% 6.24M 0s 21200K .......... .......... .......... .......... .......... 48% 51.8M 0s 21250K .......... .......... .......... .......... .......... 48% 62.1M 0s 21300K .......... .......... .......... .......... .......... 48% 64.5M 0s 21350K .......... .......... .......... .......... .......... 48% 55.8M 0s 21400K 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.......... 62% 76.5M 0s 27400K .......... .......... .......... .......... .......... 62% 78.8M 0s 27450K .......... .......... .......... .......... .......... 62% 86.1M 0s 27500K .......... .......... .......... .......... .......... 62% 87.7M 0s 27550K .......... .......... .......... .......... .......... 62% 75.7M 0s 27600K .......... .......... .......... .......... .......... 63% 81.8M 0s 27650K .......... .......... .......... .......... .......... 63% 82.7M 0s 27700K .......... .......... .......... .......... .......... 63% 84.4M 0s 27750K .......... .......... .......... .......... .......... 63% 68.3M 0s 27800K .......... .......... .......... .......... .......... 63% 63.0M 0s 27850K .......... .......... .......... .......... .......... 63% 72.8M 0s 27900K .......... .......... .......... .......... .......... 63% 73.6M 0s 27950K .......... .......... .......... .......... .......... 63% 68.7M 0s 28000K .......... .......... .......... .......... .......... 64% 88.3M 0s 28050K .......... .......... .......... .......... .......... 64% 89.7M 0s 28100K .......... .......... .......... .......... .......... 64% 116M 0s 28150K .......... .......... .......... .......... .......... 64% 89.8M 0s 28200K .......... .......... .......... .......... .......... 64% 105M 0s 28250K .......... .......... .......... .......... .......... 64% 113M 0s 28300K .......... .......... .......... .......... .......... 64% 108M 0s 28350K .......... .......... .......... .......... .......... 64% 84.5M 0s 28400K .......... .......... .......... .......... .......... 64% 7.06M 0s 28450K .......... .......... .......... .......... .......... 65% 76.4M 0s 28500K .......... .......... .......... .......... .......... 65% 88.3M 0s 28550K .......... .......... .......... .......... .......... 65% 79.2M 0s 28600K .......... .......... .......... .......... .......... 65% 89.4M 0s 28650K .......... .......... .......... .......... .......... 65% 80.6M 0s 28700K .......... .......... .......... .......... .......... 65% 84.6M 0s 28750K .......... .......... .......... .......... .......... 65% 28.5M 0s 28800K .......... .......... .......... .......... .......... 65% 73.0M 0s 28850K .......... .......... .......... .......... .......... 65% 86.2M 0s 28900K .......... .......... .......... .......... .......... 66% 81.4M 0s 28950K .......... .......... .......... .......... .......... 66% 78.1M 0s 29000K .......... .......... .......... .......... .......... 66% 84.1M 0s 29050K .......... .......... .......... .......... .......... 66% 85.2M 0s 29100K .......... .......... .......... .......... .......... 66% 84.1M 0s 29150K .......... .......... .......... .......... .......... 66% 72.1M 0s 29200K .......... .......... .......... .......... .......... 66% 105M 0s 29250K .......... .......... .......... .......... .......... 66% 88.9M 0s 29300K .......... .......... .......... .......... .......... 66% 105M 0s 29350K .......... .......... .......... .......... .......... 67% 92.5M 0s 29400K .......... .......... .......... .......... .......... 67% 107M 0s 29450K .......... .......... .......... .......... .......... 67% 108M 0s 29500K .......... .......... .......... .......... .......... 67% 106M 0s 29550K .......... .......... .......... .......... .......... 67% 62.4M 0s 29600K .......... .......... .......... .......... .......... 67% 64.3M 0s 29650K .......... .......... .......... .......... .......... 67% 55.4M 0s 29700K .......... .......... .......... .......... .......... 67% 63.9M 0s 29750K .......... .......... .......... .......... .......... 68% 40.5M 0s 29800K .......... .......... .......... .......... .......... 68% 80.5M 0s 29850K .......... .......... .......... .......... .......... 68% 55.0M 0s 29900K .......... .......... .......... .......... .......... 68% 66.1M 0s 29950K .......... .......... .......... .......... .......... 68% 50.6M 0s 30000K .......... .......... .......... .......... .......... 68% 55.4M 0s 30050K .......... .......... .......... .......... .......... 68% 54.5M 0s 30100K .......... .......... .......... .......... .......... 68% 62.2M 0s 30150K .......... .......... .......... .......... .......... 68% 4.52M 0s 30200K .......... .......... .......... .......... .......... 69% 96.9M 0s 30250K .......... .......... .......... .......... .......... 69% 92.0M 0s 30300K .......... .......... .......... .......... .......... 69% 93.0M 0s 30350K .......... .......... .......... .......... .......... 69% 81.1M 0s 30400K .......... .......... .......... .......... .......... 69% 97.1M 0s 30450K .......... .......... .......... .......... .......... 69% 98.5M 0s 30500K .......... .......... .......... .......... .......... 69% 99.9M 0s 30550K .......... .......... .......... .......... .......... 69% 87.2M 0s 30600K .......... .......... .......... .......... .......... 69% 97.1M 0s 30650K .......... .......... .......... .......... .......... 70% 98.0M 0s 30700K .......... .......... .......... .......... .......... 70% 88.5M 0s 30750K .......... .......... .......... .......... .......... 70% 69.3M 0s 30800K .......... .......... .......... .......... .......... 70% 83.1M 0s 30850K .......... .......... .......... .......... .......... 70% 86.6M 0s 30900K .......... .......... .......... .......... .......... 70% 82.4M 0s 30950K .......... .......... .......... .......... .......... 70% 75.1M 0s 31000K .......... .......... .......... .......... .......... 70% 84.9M 0s 31050K .......... .......... .......... .......... .......... 70% 84.2M 0s 31100K .......... .......... .......... .......... .......... 71% 84.9M 0s 31150K .......... .......... .......... .......... .......... 71% 70.5M 0s 31200K .......... .......... .......... .......... .......... 71% 81.2M 0s 31250K .......... .......... .......... .......... .......... 71% 81.5M 0s 31300K .......... .......... .......... .......... .......... 71% 81.2M 0s 31350K .......... .......... .......... .......... .......... 71% 74.6M 0s 31400K .......... .......... .......... .......... .......... 71% 83.7M 0s 31450K .......... .......... .......... .......... .......... 71% 82.2M 0s 31500K .......... .......... .......... .......... .......... 72% 81.0M 0s 31550K .......... .......... .......... .......... .......... 72% 79.2M 0s 31600K .......... .......... .......... .......... .......... 72% 111M 0s 31650K .......... .......... .......... .......... .......... 72% 7.95M 0s 31700K .......... .......... .......... .......... .......... 72% 126M 0s 31750K .......... .......... .......... .......... .......... 72% 54.2M 0s 31800K .......... .......... .......... .......... .......... 72% 47.9M 0s 31850K .......... .......... .......... .......... .......... 72% 116M 0s 31900K .......... .......... .......... .......... .......... 72% 62.2M 0s 31950K .......... .......... .......... .......... .......... 73% 41.7M 0s 32000K .......... .......... .......... .......... .......... 73% 53.0M 0s 32050K .......... .......... .......... .......... .......... 73% 61.7M 0s 32100K .......... .......... .......... .......... .......... 73% 61.4M 0s 32150K .......... .......... .......... .......... .......... 73% 55.8M 0s 32200K .......... .......... .......... .......... .......... 73% 62.8M 0s 32250K .......... .......... .......... .......... .......... 73% 62.2M 0s 32300K .......... .......... .......... .......... .......... 73% 61.3M 0s 32350K .......... .......... .......... .......... .......... 73% 52.7M 0s 32400K .......... .......... .......... .......... .......... 74% 63.7M 0s 32450K .......... .......... .......... .......... .......... 74% 62.8M 0s 32500K .......... .......... .......... .......... .......... 74% 69.7M 0s 32550K .......... .......... .......... .......... .......... 74% 68.2M 0s 32600K .......... .......... .......... .......... .......... 74% 76.0M 0s 32650K .......... .......... .......... .......... .......... 74% 74.1M 0s 32700K .......... .......... .......... .......... .......... 74% 79.4M 0s 32750K .......... .......... .......... .......... .......... 74% 64.1M 0s 32800K .......... .......... .......... .......... .......... 74% 73.2M 0s 32850K .......... .......... .......... .......... .......... 75% 76.7M 0s 32900K .......... .......... .......... .......... .......... 75% 77.0M 0s 32950K .......... .......... .......... .......... .......... 75% 69.0M 0s 33000K .......... .......... .......... .......... .......... 75% 77.1M 0s 33050K .......... .......... .......... .......... .......... 75% 75.3M 0s 33100K .......... .......... .......... .......... .......... 75% 76.1M 0s 33150K .......... .......... .......... .......... .......... 75% 64.0M 0s 33200K .......... .......... .......... .......... .......... 75% 75.7M 0s 33250K .......... .......... .......... .......... .......... 76% 110M 0s 33300K .......... .......... .......... .......... .......... 76% 113M 0s 33350K .......... .......... .......... .......... .......... 76% 98.0M 0s 33400K .......... .......... .......... .......... .......... 76% 69.8M 0s 33450K .......... .......... .......... .......... .......... 76% 48.8M 0s 33500K .......... .......... .......... .......... .......... 76% 61.4M 0s 33550K .......... .......... .......... .......... .......... 76% 51.0M 0s 33600K .......... .......... .......... .......... .......... 76% 6.99M 0s 33650K .......... .......... .......... .......... .......... 76% 45.5M 0s 33700K .......... .......... .......... .......... .......... 77% 52.9M 0s 33750K .......... .......... .......... .......... .......... 77% 54.0M 0s 33800K .......... .......... .......... .......... .......... 77% 62.4M 0s 33850K .......... .......... .......... .......... .......... 77% 65.0M 0s 33900K .......... .......... .......... .......... .......... 77% 66.3M 0s 33950K .......... .......... .......... .......... .......... 77% 43.3M 0s 34000K .......... .......... .......... .......... .......... 77% 49.9M 0s 34050K .......... .......... .......... .......... .......... 77% 54.1M 0s 34100K .......... .......... .......... .......... .......... 77% 54.2M 0s 34150K .......... .......... .......... .......... .......... 78% 55.1M 0s 34200K .......... .......... .......... .......... .......... 78% 62.6M 0s 34250K .......... .......... .......... .......... .......... 78% 59.5M 0s 34300K .......... .......... .......... .......... .......... 78% 61.9M 0s 34350K .......... .......... .......... .......... .......... 78% 52.9M 0s 34400K .......... .......... .......... .......... .......... 78% 61.6M 0s 34450K .......... .......... .......... .......... .......... 78% 60.8M 0s 34500K .......... .......... .......... .......... .......... 78% 61.8M 0s 34550K .......... .......... .......... .......... .......... 78% 66.2M 0s 34600K .......... .......... .......... .......... .......... 79% 87.5M 0s 34650K .......... .......... .......... .......... .......... 79% 85.4M 0s 34700K .......... .......... .......... .......... .......... 79% 94.2M 0s 34750K .......... .......... .......... .......... .......... 79% 81.1M 0s 34800K .......... .......... .......... .......... .......... 79% 95.1M 0s 34850K .......... .......... .......... .......... .......... 79% 97.5M 0s 34900K .......... .......... .......... .......... .......... 79% 98.4M 0s 34950K .......... .......... .......... .......... .......... 79% 86.2M 0s 35000K .......... .......... .......... .......... .......... 80% 96.6M 0s 35050K .......... .......... .......... .......... .......... 80% 97.3M 0s 35100K .......... .......... .......... .......... .......... 80% 97.7M 0s 35150K .......... .......... .......... .......... .......... 80% 71.7M 0s 35200K .......... .......... .......... .......... .......... 80% 8.05M 0s 35250K .......... .......... .......... .......... .......... 80% 123M 0s 35300K .......... .......... .......... .......... .......... 80% 124M 0s 35350K .......... 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.......... 82% 97.6M 0s 36050K .......... .......... .......... .......... .......... 82% 54.6M 0s 36100K .......... .......... .......... .......... .......... 82% 60.9M 0s 36150K .......... .......... .......... .......... .......... 82% 52.7M 0s 36200K .......... .......... .......... .......... .......... 82% 63.3M 0s 36250K .......... .......... .......... .......... .......... 82% 55.9M 0s 36300K .......... .......... .......... .......... .......... 82% 42.4M 0s 36350K .......... .......... .......... .......... .......... 83% 39.4M 0s 36400K .......... .......... .......... .......... .......... 83% 55.1M 0s 36450K .......... .......... .......... .......... .......... 83% 6.93M 0s 36500K .......... .......... .......... .......... .......... 83% 108M 0s 36550K .......... .......... .......... .......... .......... 83% 94.7M 0s 36600K .......... .......... .......... .......... .......... 83% 106M 0s 36650K .......... .......... .......... .......... .......... 83% 106M 0s 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PREFIX=/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda installing: python-2.7.15-h9bab390_6 ... Python 2.7.15 :: Anaconda, Inc. installing: ca-certificates-2018.03.07-0 ... installing: conda-env-2.6.0-1 ... installing: libgcc-ng-8.2.0-hdf63c60_1 ... installing: libstdcxx-ng-8.2.0-hdf63c60_1 ... installing: libffi-3.2.1-hd88cf55_4 ... installing: ncurses-6.1-he6710b0_1 ... installing: openssl-1.1.1a-h7b6447c_0 ... installing: yaml-0.1.7-had09818_2 ... installing: zlib-1.2.11-h7b6447c_3 ... installing: libedit-3.1.20170329-h6b74fdf_2 ... installing: readline-7.0-h7b6447c_5 ... installing: tk-8.6.8-hbc83047_0 ... installing: sqlite-3.26.0-h7b6447c_0 ... installing: asn1crypto-0.24.0-py27_0 ... installing: certifi-2018.11.29-py27_0 ... installing: chardet-3.0.4-py27_1 ... installing: enum34-1.1.6-py27_1 ... installing: futures-3.2.0-py27_0 ... installing: idna-2.8-py27_0 ... installing: ipaddress-1.0.22-py27_0 ... installing: pycosat-0.6.3-py27h14c3975_0 ... installing: pycparser-2.19-py27_0 ... installing: pysocks-1.6.8-py27_0 ... installing: ruamel_yaml-0.15.46-py27h14c3975_0 ... installing: six-1.12.0-py27_0 ... installing: cffi-1.11.5-py27he75722e_1 ... installing: setuptools-40.6.3-py27_0 ... installing: cryptography-2.4.2-py27h1ba5d50_0 ... installing: wheel-0.32.3-py27_0 ... installing: pip-18.1-py27_0 ... installing: pyopenssl-18.0.0-py27_0 ... installing: urllib3-1.24.1-py27_0 ... installing: requests-2.21.0-py27_0 ... installing: conda-4.5.12-py27_0 ... installation finished. Updating and installing required and optional packages... Collecting pip Using cached https://files.pythonhosted.org/packages/5c/e0/be401c003291b56efc55aeba6a80ab790d3d4cece2778288d65323009420/pip-19.1.1-py2.py3-none-any.whl Installing collected packages: pip Found existing installation: pip 18.1 Uninstalling pip-18.1: Successfully uninstalled pip-18.1 Successfully installed pip-19.1.1 Solving environment: ...working... done nomkl-3.0 | 48 KB | | 0% nomkl-3.0 | 48 KB | ########## | 100% ca-certificates-2019 | 126 KB | | 0% ca-certificates-2019 | 126 KB | ########## | 100% openssl-1.1.1b | 4.0 MB | | 0% openssl-1.1.1b | 4.0 MB | #######5 | 76% openssl-1.1.1b | 4.0 MB | #########8 | 98% openssl-1.1.1b | 4.0 MB | ########## | 100% conda-4.6.14 | 2.1 MB | | 0% conda-4.6.14 | 2.1 MB | #######7 | 77% conda-4.6.14 | 2.1 MB | ######### | 91% conda-4.6.14 | 2.1 MB | ########## | 100% certifi-2019.3.9 | 155 KB | | 0% certifi-2019.3.9 | 155 KB | ########## | 100% blas-1.0 | 48 KB | | 0% blas-1.0 | 48 KB | ########## | 100% ## Package Plan ## environment location: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda added / updated specs: - nomkl The following packages will be downloaded: package | build ---------------------------|----------------- nomkl-3.0 | 0 48 KB ca-certificates-2019.1.23 | 0 126 KB openssl-1.1.1b | h7b6447c_1 4.0 MB conda-4.6.14 | py27_0 2.1 MB certifi-2019.3.9 | py27_0 155 KB blas-1.0 | openblas 48 KB ------------------------------------------------------------ Total: 6.4 MB The following NEW packages will be INSTALLED: blas: 1.0-openblas nomkl: 3.0-0 The following packages will be UPDATED: ca-certificates: 2018.03.07-0 --> 2019.1.23-0 certifi: 2018.11.29-py27_0 --> 2019.3.9-py27_0 conda: 4.5.12-py27_0 --> 4.6.14-py27_0 openssl: 1.1.1a-h7b6447c_0 --> 1.1.1b-h7b6447c_1 Downloading and Extracting Packages Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata: ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda added / updated specs: - cython=0.29 - ipython - notebook - numpy - pytest - scipy The following packages will be downloaded: package | build ---------------------------|----------------- atomicwrites-1.3.0 | py27_1 13 KB attrs-19.1.0 | py27_1 56 KB backports-1.0 | py27_1 3 KB backports.shutil_get_terminal_size-1.0.0| py27_2 8 KB backports_abc-0.5 | py_0 13 KB bleach-3.1.0 | py27_0 228 KB configparser-3.7.4 | py27_0 41 KB cython-0.29.7 | py27he6710b0_0 2.1 MB decorator-4.4.0 | py27_1 18 KB defusedxml-0.6.0 | py_0 23 KB entrypoints-0.3 | py27_0 12 KB funcsigs-1.0.2 | py27h83f16ab_0 20 KB functools32-3.2.3.2 | py27_1 23 KB gmp-6.1.2 | h6c8ec71_1 744 KB ipykernel-4.10.0 | py27_0 145 KB ipython-5.8.0 | py27_0 1.0 MB ipython_genutils-0.2.0 | py27h89fb69b_0 38 KB jinja2-2.10.1 | py27_0 181 KB jsonschema-3.0.1 | py27_0 86 KB jupyter_client-5.2.4 | py27_0 125 KB jupyter_core-4.4.0 | py27_0 62 KB libgfortran-ng-7.3.0 | hdf63c60_0 1.3 MB libopenblas-0.3.3 | h5a2b251_3 7.6 MB libsodium-1.0.16 | h1bed415_0 302 KB markupsafe-1.1.1 | py27h7b6447c_0 29 KB mistune-0.8.4 | py27h7b6447c_0 53 KB more-itertools-5.0.0 | py27_0 86 KB nbconvert-5.5.0 | py_0 381 KB nbformat-4.4.0 | py27_0 139 KB notebook-5.7.8 | py27_0 7.2 MB numpy-1.16.3 | py27h99e49ec_0 49 KB numpy-base-1.16.3 | py27h2f8d375_0 4.3 MB pandoc-2.2.3.2 | 0 20.8 MB pandocfilters-1.4.2 | py27_1 13 KB pathlib2-2.3.3 | py27_0 31 KB pexpect-4.7.0 | py27_0 80 KB pickleshare-0.7.5 | py27_0 12 KB pluggy-0.11.0 | py_0 20 KB prometheus_client-0.6.0 | py27_0 69 KB prompt_toolkit-1.0.15 | py27h1b593e1_0 333 KB ptyprocess-0.6.0 | py27_0 22 KB py-1.8.0 | py27_0 137 KB pygments-2.4.0 | py_0 664 KB pyrsistent-0.14.11 | py27h7b6447c_0 88 KB pytest-4.5.0 | py27_0 358 KB python-dateutil-2.8.0 | py27_0 279 KB pyzmq-18.0.0 | py27he6710b0_0 463 KB scandir-1.10.0 | py27h7b6447c_0 32 KB scipy-1.2.1 | py27he2b7bc3_0 17.7 MB send2trash-1.5.0 | py27_0 16 KB simplegeneric-0.8.1 | py27_2 9 KB singledispatch-3.4.0.3 | py27_0 15 KB terminado-0.8.2 | py27_0 22 KB testpath-0.4.2 | py27_0 91 KB tornado-5.1.1 | py27h7b6447c_0 643 KB traitlets-4.3.2 | py27_0 128 KB wcwidth-0.1.7 | py27_0 25 KB webencodings-0.5.1 | py27_1 19 KB zeromq-4.3.1 | he6710b0_3 666 KB ------------------------------------------------------------ Total: 68.9 MB The following NEW packages will be INSTALLED: atomicwrites pkgs/main/linux-64::atomicwrites-1.3.0-py27_1 attrs pkgs/main/linux-64::attrs-19.1.0-py27_1 backports pkgs/main/linux-64::backports-1.0-py27_1 backports.shutil_~ pkgs/main/linux-64::backports.shutil_get_terminal_size-1.0.0-py27_2 backports_abc pkgs/main/noarch::backports_abc-0.5-py_0 bleach pkgs/main/linux-64::bleach-3.1.0-py27_0 configparser pkgs/main/linux-64::configparser-3.7.4-py27_0 cython pkgs/main/linux-64::cython-0.29.7-py27he6710b0_0 decorator pkgs/main/linux-64::decorator-4.4.0-py27_1 defusedxml pkgs/main/noarch::defusedxml-0.6.0-py_0 entrypoints pkgs/main/linux-64::entrypoints-0.3-py27_0 funcsigs pkgs/main/linux-64::funcsigs-1.0.2-py27h83f16ab_0 functools32 pkgs/main/linux-64::functools32-3.2.3.2-py27_1 gmp pkgs/main/linux-64::gmp-6.1.2-h6c8ec71_1 ipykernel pkgs/main/linux-64::ipykernel-4.10.0-py27_0 ipython pkgs/main/linux-64::ipython-5.8.0-py27_0 ipython_genutils pkgs/main/linux-64::ipython_genutils-0.2.0-py27h89fb69b_0 jinja2 pkgs/main/linux-64::jinja2-2.10.1-py27_0 jsonschema pkgs/main/linux-64::jsonschema-3.0.1-py27_0 jupyter_client pkgs/main/linux-64::jupyter_client-5.2.4-py27_0 jupyter_core pkgs/main/linux-64::jupyter_core-4.4.0-py27_0 libgfortran-ng pkgs/main/linux-64::libgfortran-ng-7.3.0-hdf63c60_0 libopenblas pkgs/main/linux-64::libopenblas-0.3.3-h5a2b251_3 libsodium pkgs/main/linux-64::libsodium-1.0.16-h1bed415_0 markupsafe pkgs/main/linux-64::markupsafe-1.1.1-py27h7b6447c_0 mistune pkgs/main/linux-64::mistune-0.8.4-py27h7b6447c_0 more-itertools pkgs/main/linux-64::more-itertools-5.0.0-py27_0 nbconvert pkgs/main/noarch::nbconvert-5.5.0-py_0 nbformat pkgs/main/linux-64::nbformat-4.4.0-py27_0 notebook pkgs/main/linux-64::notebook-5.7.8-py27_0 numpy pkgs/main/linux-64::numpy-1.16.3-py27h99e49ec_0 numpy-base pkgs/main/linux-64::numpy-base-1.16.3-py27h2f8d375_0 pandoc pkgs/main/linux-64::pandoc-2.2.3.2-0 pandocfilters pkgs/main/linux-64::pandocfilters-1.4.2-py27_1 pathlib2 pkgs/main/linux-64::pathlib2-2.3.3-py27_0 pexpect pkgs/main/linux-64::pexpect-4.7.0-py27_0 pickleshare pkgs/main/linux-64::pickleshare-0.7.5-py27_0 pluggy pkgs/main/noarch::pluggy-0.11.0-py_0 prometheus_client pkgs/main/linux-64::prometheus_client-0.6.0-py27_0 prompt_toolkit pkgs/main/linux-64::prompt_toolkit-1.0.15-py27h1b593e1_0 ptyprocess pkgs/main/linux-64::ptyprocess-0.6.0-py27_0 py pkgs/main/linux-64::py-1.8.0-py27_0 pygments pkgs/main/noarch::pygments-2.4.0-py_0 pyrsistent pkgs/main/linux-64::pyrsistent-0.14.11-py27h7b6447c_0 pytest pkgs/main/linux-64::pytest-4.5.0-py27_0 python-dateutil pkgs/main/linux-64::python-dateutil-2.8.0-py27_0 pyzmq pkgs/main/linux-64::pyzmq-18.0.0-py27he6710b0_0 scandir pkgs/main/linux-64::scandir-1.10.0-py27h7b6447c_0 scipy pkgs/main/linux-64::scipy-1.2.1-py27he2b7bc3_0 send2trash pkgs/main/linux-64::send2trash-1.5.0-py27_0 simplegeneric pkgs/main/linux-64::simplegeneric-0.8.1-py27_2 singledispatch pkgs/main/linux-64::singledispatch-3.4.0.3-py27_0 terminado pkgs/main/linux-64::terminado-0.8.2-py27_0 testpath pkgs/main/linux-64::testpath-0.4.2-py27_0 tornado pkgs/main/linux-64::tornado-5.1.1-py27h7b6447c_0 traitlets pkgs/main/linux-64::traitlets-4.3.2-py27_0 wcwidth pkgs/main/linux-64::wcwidth-0.1.7-py27_0 webencodings pkgs/main/linux-64::webencodings-0.5.1-py27_1 zeromq pkgs/main/linux-64::zeromq-4.3.1-he6710b0_3 Downloading and Extracting Packages pexpect-4.7.0 | 80 KB | | 0% pexpect-4.7.0 | 80 KB | #5 | 15% pexpect-4.7.0 | 80 KB | ########## | 100% traitlets-4.3.2 | 128 KB | | 0% 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scandir-1.10.0 | 32 KB | | 0% scandir-1.10.0 | 32 KB | ########## | 100% webencodings-0.5.1 | 19 KB | | 0% webencodings-0.5.1 | 19 KB | ########## | 100% ipython-5.8.0 | 1.0 MB | | 0% ipython-5.8.0 | 1.0 MB | #######9 | 80% ipython-5.8.0 | 1.0 MB | #########7 | 97% ipython-5.8.0 | 1.0 MB | ########## | 100% defusedxml-0.6.0 | 23 KB | | 0% defusedxml-0.6.0 | 23 KB | ########## | 100% zeromq-4.3.1 | 666 KB | | 0% zeromq-4.3.1 | 666 KB | ########2 | 83% zeromq-4.3.1 | 666 KB | ########## | 100% funcsigs-1.0.2 | 20 KB | | 0% funcsigs-1.0.2 | 20 KB | ########## | 100% libsodium-1.0.16 | 302 KB | | 0% libsodium-1.0.16 | 302 KB | ########## | 100% ipykernel-4.10.0 | 145 KB | | 0% ipykernel-4.10.0 | 145 KB | ########## | 100% functools32-3.2.3.2 | 23 KB | | 0% functools32-3.2.3.2 | 23 KB | ########## | 100% wcwidth-0.1.7 | 25 KB | | 0% wcwidth-0.1.7 | 25 KB | ########## | 100% py-1.8.0 | 137 KB | | 0% py-1.8.0 | 137 KB | ########## | 100% backports.shutil_get | 8 KB | | 0% backports.shutil_get | 8 KB | ########## | 100% pyzmq-18.0.0 | 463 KB | | 0% pyzmq-18.0.0 | 463 KB | #########8 | 98% pyzmq-18.0.0 | 463 KB | ########## | 100% atomicwrites-1.3.0 | 13 KB | | 0% atomicwrites-1.3.0 | 13 KB | ########## | 100% nbformat-4.4.0 | 139 KB | | 0% nbformat-4.4.0 | 139 KB | ########## | 100% attrs-19.1.0 | 56 KB | | 0% attrs-19.1.0 | 56 KB | ########## | 100% markupsafe-1.1.1 | 29 KB | | 0% markupsafe-1.1.1 | 29 KB | ########## | 100% pandoc-2.2.3.2 | 20.8 MB | | 0% pandoc-2.2.3.2 | 20.8 MB | #7 | 17% pandoc-2.2.3.2 | 20.8 MB | ###6 | 37% pandoc-2.2.3.2 | 20.8 MB | #####7 | 58% pandoc-2.2.3.2 | 20.8 MB | #######5 | 75% pandoc-2.2.3.2 | 20.8 MB | ########9 | 89% pandoc-2.2.3.2 | 20.8 MB | #########9 | 100% pandoc-2.2.3.2 | 20.8 MB | ########## | 100% cython-0.29.7 | 2.1 MB | | 0% cython-0.29.7 | 2.1 MB | #######7 | 78% cython-0.29.7 | 2.1 MB | #########7 | 98% cython-0.29.7 | 2.1 MB | ########## | 100% pytest-4.5.0 | 358 KB | | 0% pytest-4.5.0 | 358 KB | ########## | 100% mistune-0.8.4 | 53 KB | | 0% mistune-0.8.4 | 53 KB | ########## | 100% tornado-5.1.1 | 643 KB | | 0% tornado-5.1.1 | 643 KB | ########3 | 84% tornado-5.1.1 | 643 KB | ########## | 100% ptyprocess-0.6.0 | 22 KB | | 0% ptyprocess-0.6.0 | 22 KB | ########## | 100% jinja2-2.10.1 | 181 KB | | 0% jinja2-2.10.1 | 181 KB | ########## | 100% pyrsistent-0.14.11 | 88 KB | | 0% pyrsistent-0.14.11 | 88 KB | ########## | 100% send2trash-1.5.0 | 16 KB | | 0% send2trash-1.5.0 | 16 KB | ########## | 100% python-dateutil-2.8. | 279 KB | | 0% python-dateutil-2.8. | 279 KB | ########## | 100% ipython_genutils-0.2 | 38 KB | | 0% ipython_genutils-0.2 | 38 KB | ########## | 100% backports-1.0 | 3 KB | | 0% backports-1.0 | 3 KB | ########## | 100% jupyter_client-5.2.4 | 125 KB | | 0% jupyter_client-5.2.4 | 125 KB | ########## | 100% simplegeneric-0.8.1 | 9 KB | | 0% simplegeneric-0.8.1 | 9 KB | ########## | 100% libgfortran-ng-7.3.0 | 1.3 MB | | 0% libgfortran-ng-7.3.0 | 1.3 MB | ########2 | 82% libgfortran-ng-7.3.0 | 1.3 MB | ########## | 100% numpy-1.16.3 | 49 KB | | 0% numpy-1.16.3 | 49 KB | ########## | 100% terminado-0.8.2 | 22 KB | | 0% terminado-0.8.2 | 22 KB | ########## | 100% pandocfilters-1.4.2 | 13 KB | | 0% pandocfilters-1.4.2 | 13 KB | ########## | 100% prompt_toolkit-1.0.1 | 333 KB | | 0% prompt_toolkit-1.0.1 | 333 KB | ########9 | 89% prompt_toolkit-1.0.1 | 333 KB | ########## | 100% more-itertools-5.0.0 | 86 KB | | 0% more-itertools-5.0.0 | 86 KB | ########## | 100% configparser-3.7.4 | 41 KB | | 0% configparser-3.7.4 | 41 KB | ########## | 100% pathlib2-2.3.3 | 31 KB | | 0% pathlib2-2.3.3 | 31 KB | ########## | 100% jupyter_core-4.4.0 | 62 KB | | 0% jupyter_core-4.4.0 | 62 KB | ########## | 100% singledispatch-3.4.0 | 15 KB | | 0% singledispatch-3.4.0 | 15 KB | ########## | 100% testpath-0.4.2 | 91 KB | | 0% testpath-0.4.2 | 91 KB | ########## | 100% entrypoints-0.3 | 12 KB | | 0% entrypoints-0.3 | 12 KB | ########## | 100% gmp-6.1.2 | 744 KB | | 0% gmp-6.1.2 | 744 KB | ########5 | 86% gmp-6.1.2 | 744 KB | ########## | 100% notebook-5.7.8 | 7.2 MB | | 0% notebook-5.7.8 | 7.2 MB | ##### | 50% notebook-5.7.8 | 7.2 MB | #######6 | 77% notebook-5.7.8 | 7.2 MB | #########4 | 94% notebook-5.7.8 | 7.2 MB | ########## | 100% nbconvert-5.5.0 | 381 KB | | 0% nbconvert-5.5.0 | 381 KB | #########6 | 96% nbconvert-5.5.0 | 381 KB | ########## | 100% scipy-1.2.1 | 17.7 MB | | 0% scipy-1.2.1 | 17.7 MB | ## | 21% scipy-1.2.1 | 17.7 MB | ####4 | 44% scipy-1.2.1 | 17.7 MB | ######6 | 67% scipy-1.2.1 | 17.7 MB | ########1 | 81% scipy-1.2.1 | 17.7 MB | #########2 | 92% scipy-1.2.1 | 17.7 MB | ########## | 100% prometheus_client-0. | 69 KB | | 0% prometheus_client-0. | 69 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Collecting matplotlib Downloading https://files.pythonhosted.org/packages/32/6b/0368cfa5e1d1ae169ab7dc78addda3fd5e6262e48d7373a9114bac7caff7/matplotlib-2.2.4-cp27-cp27mu-manylinux1_x86_64.whl (12.8MB) Requirement already satisfied: python-dateutil>=2.1 in ./miniconda/lib/python2.7/site-packages (from matplotlib) (2.8.0) Collecting subprocess32 (from matplotlib) Downloading https://files.pythonhosted.org/packages/32/c8/564be4d12629b912ea431f1a50eb8b3b9d00f1a0b1ceff17f266be190007/subprocess32-3.5.4.tar.gz (97kB) Collecting cycler>=0.10 (from matplotlib) Downloading https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl Requirement already satisfied: six>=1.10 in ./miniconda/lib/python2.7/site-packages (from matplotlib) (1.12.0) Collecting backports.functools-lru-cache (from matplotlib) Downloading https://files.pythonhosted.org/packages/03/8e/2424c0e65c4a066e28f539364deee49b6451f8fcd4f718fefa50cc3dcf48/backports.functools_lru_cache-1.5-py2.py3-none-any.whl Collecting pytz (from matplotlib) Downloading https://files.pythonhosted.org/packages/3d/73/fe30c2daaaa0713420d0382b16fbb761409f532c56bdcc514bf7b6262bb6/pytz-2019.1-py2.py3-none-any.whl (510kB) Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib) Downloading https://files.pythonhosted.org/packages/dd/d9/3ec19e966301a6e25769976999bd7bbe552016f0d32b577dc9d63d2e0c49/pyparsing-2.4.0-py2.py3-none-any.whl (62kB) Requirement already satisfied: numpy>=1.7.1 in ./miniconda/lib/python2.7/site-packages (from matplotlib) (1.16.3) Collecting kiwisolver>=1.0.1 (from matplotlib) Downloading https://files.pythonhosted.org/packages/3d/78/cb9248b2289ec31e301137cedbe4ca503a74ca87f88cdbfd2f8be52323bf/kiwisolver-1.1.0-cp27-cp27mu-manylinux1_x86_64.whl (93kB) Requirement already satisfied: setuptools in ./miniconda/lib/python2.7/site-packages (from kiwisolver>=1.0.1->matplotlib) (40.6.3) Building wheels for collected packages: subprocess32 Building wheel for subprocess32 (setup.py): started Building wheel for subprocess32 (setup.py): finished with status 'error' ERROR: Complete output from command /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-M43fRx/subprocess32/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8ZkPLN --python-tag cp27: ERROR: running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-2.7 copying subprocess32.py -> build/lib.linux-x86_64-2.7 running build_ext running build_configure configure: loading site script /usr/share/site/x86_64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking sys/cdefs.h usability... yes checking sys/cdefs.h presence... yes checking for sys/cdefs.h... yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking sys/syscall.h usability... yes checking sys/syscall.h presence... yes checking for sys/syscall.h... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for pipe2... yes checking for setsid... yes checking whether dirfd is declared... yes configure: creating ./config.status config.status: creating _posixsubprocess_config.h building '_posixsubprocess32' extension creating build/temp.linux-x86_64-2.7 gcc -pthread -B /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat -Wl,--sysroot=/ -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7 -c _posixsubprocess.c -o build/temp.linux-x86_64-2.7/_posixsubprocess.o In file included from /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7/Python.h:8:0, from _posixsubprocess.c:16: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7/pyconfig.h:1223:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/sys/cdefs.h:23:0, from _posixsubprocess.c:12: /usr/include/features.h:266:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7/Python.h:8:0, from _posixsubprocess.c:16: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7/pyconfig.h:1245:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /usr/include/sys/cdefs.h:23:0, from _posixsubprocess.c:12: /usr/include/features.h:203:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 gcc -pthread -shared -B /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat -L/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/lib -Wl,-rpath=/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-2.7/_posixsubprocess.o -L/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/_posixsubprocess32.so /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: file not recognized: file format not recognized collect2: error: ld returned 1 exit status error: command 'gcc' failed with exit status 1 ---------------------------------------- ERROR: Failed building wheel for subprocess32 Running setup.py clean for subprocess32 Failed to build subprocess32 Installing collected packages: subprocess32, cycler, backports.functools-lru-cache, pytz, pyparsing, kiwisolver, matplotlib Running setup.py install for subprocess32: started Running setup.py install for subprocess32: finished with status 'error' ERROR: Complete output from command /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-M43fRx/subprocess32/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-XtRvcq/install-record.txt --single-version-externally-managed --compile: ERROR: running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 copying subprocess32.py -> build/lib.linux-x86_64-2.7 running build_ext running build_configure _posixsubprocess_config.h is already up to date. building '_posixsubprocess32' extension creating build/temp.linux-x86_64-2.7 gcc -pthread -B /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat -Wl,--sysroot=/ -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7 -c _posixsubprocess.c -o build/temp.linux-x86_64-2.7/_posixsubprocess.o In file included from /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7/Python.h:8:0, from _posixsubprocess.c:16: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7/pyconfig.h:1223:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/sys/cdefs.h:23:0, from _posixsubprocess.c:12: /usr/include/features.h:266:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7/Python.h:8:0, from _posixsubprocess.c:16: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/include/python2.7/pyconfig.h:1245:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 In file included from /usr/include/sys/cdefs.h:23:0, from _posixsubprocess.c:12: /usr/include/features.h:203:0: note: this is the location of the previous definition # define _XOPEN_SOURCE 700 gcc -pthread -shared -B /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat -L/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/lib -Wl,-rpath=/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-2.7/_posixsubprocess.o -L/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/_posixsubprocess32.so /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/compiler_compat/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: unable to initialize decompress status for section .debug_aranges /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o: file not recognized: file format not recognized collect2: error: ld returned 1 exit status error: command 'gcc' failed with exit status 1 ---------------------------------------- ERROR: Command "/apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-M43fRx/subprocess32/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-XtRvcq/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-M43fRx/subprocess32/ Collecting package metadata: ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda added / updated specs: - matplotlib The following packages will be downloaded: package | build ---------------------------|----------------- backports.functools_lru_cache-1.5| py27_1 9 KB cycler-0.10.0 | py27_0 13 KB dbus-1.13.6 | h746ee38_0 587 KB expat-2.2.6 | he6710b0_0 187 KB fontconfig-2.13.0 | h9420a91_0 291 KB freetype-2.9.1 | h8a8886c_1 822 KB glib-2.56.2 | hd408876_0 5.0 MB gst-plugins-base-1.14.0 | hbbd80ab_1 6.3 MB gstreamer-1.14.0 | hb453b48_1 3.8 MB icu-58.2 | h9c2bf20_1 22.5 MB jpeg-9b | h024ee3a_2 248 KB kiwisolver-1.1.0 | py27he6710b0_0 91 KB libpng-1.6.37 | hbc83047_0 364 KB libuuid-1.0.3 | h1bed415_2 16 KB libxcb-1.13 | h1bed415_1 502 KB libxml2-2.9.9 | he19cac6_0 2.0 MB matplotlib-2.2.3 | py27hb69df0a_0 6.5 MB pcre-8.43 | he6710b0_0 260 KB pyparsing-2.4.0 | py_0 58 KB pyqt-5.9.2 | py27h05f1152_2 5.4 MB pytz-2019.1 | py_0 236 KB qt-5.9.7 | h5867ecd_1 85.9 MB sip-4.19.8 | py27hf484d3e_0 291 KB subprocess32-3.5.3 | py27h7b6447c_0 44 KB xz-5.2.4 | h14c3975_4 366 KB ------------------------------------------------------------ Total: 141.7 MB The following NEW packages will be INSTALLED: backports.functoo~ pkgs/main/linux-64::backports.functools_lru_cache-1.5-py27_1 cycler pkgs/main/linux-64::cycler-0.10.0-py27_0 dbus pkgs/main/linux-64::dbus-1.13.6-h746ee38_0 expat pkgs/main/linux-64::expat-2.2.6-he6710b0_0 fontconfig pkgs/main/linux-64::fontconfig-2.13.0-h9420a91_0 freetype pkgs/main/linux-64::freetype-2.9.1-h8a8886c_1 glib pkgs/main/linux-64::glib-2.56.2-hd408876_0 gst-plugins-base pkgs/main/linux-64::gst-plugins-base-1.14.0-hbbd80ab_1 gstreamer pkgs/main/linux-64::gstreamer-1.14.0-hb453b48_1 icu pkgs/main/linux-64::icu-58.2-h9c2bf20_1 jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2 kiwisolver pkgs/main/linux-64::kiwisolver-1.1.0-py27he6710b0_0 libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0 libuuid pkgs/main/linux-64::libuuid-1.0.3-h1bed415_2 libxcb pkgs/main/linux-64::libxcb-1.13-h1bed415_1 libxml2 pkgs/main/linux-64::libxml2-2.9.9-he19cac6_0 matplotlib pkgs/main/linux-64::matplotlib-2.2.3-py27hb69df0a_0 pcre pkgs/main/linux-64::pcre-8.43-he6710b0_0 pyparsing pkgs/main/noarch::pyparsing-2.4.0-py_0 pyqt pkgs/main/linux-64::pyqt-5.9.2-py27h05f1152_2 pytz pkgs/main/noarch::pytz-2019.1-py_0 qt pkgs/main/linux-64::qt-5.9.7-h5867ecd_1 sip pkgs/main/linux-64::sip-4.19.8-py27hf484d3e_0 subprocess32 pkgs/main/linux-64::subprocess32-3.5.3-py27h7b6447c_0 xz pkgs/main/linux-64::xz-5.2.4-h14c3975_4 Downloading and Extracting Packages matplotlib-2.2.3 | 6.5 MB | | 0% matplotlib-2.2.3 | 6.5 MB | ####9 | 49% matplotlib-2.2.3 | 6.5 MB | #######5 | 76% matplotlib-2.2.3 | 6.5 MB | #########1 | 92% matplotlib-2.2.3 | 6.5 MB | ########## | 100% dbus-1.13.6 | 587 KB | | 0% dbus-1.13.6 | 587 KB | #########2 | 93% dbus-1.13.6 | 587 KB | ########## | 100% libuuid-1.0.3 | 16 KB | | 0% libuuid-1.0.3 | 16 KB | ########## | 100% sip-4.19.8 | 291 KB | | 0% sip-4.19.8 | 291 KB | ########## | 100% qt-5.9.7 | 85.9 MB | | 0% qt-5.9.7 | 85.9 MB | 4 | 4% qt-5.9.7 | 85.9 MB | 9 | 9% qt-5.9.7 | 85.9 MB | #3 | 14% qt-5.9.7 | 85.9 MB | #8 | 19% qt-5.9.7 | 85.9 MB | ##3 | 24% qt-5.9.7 | 85.9 MB | ##8 | 28% qt-5.9.7 | 85.9 MB | ###3 | 33% qt-5.9.7 | 85.9 MB | ###8 | 38% qt-5.9.7 | 85.9 MB | ####2 | 43% qt-5.9.7 | 85.9 MB | ####7 | 47% qt-5.9.7 | 85.9 MB | #####1 | 52% qt-5.9.7 | 85.9 MB | #####6 | 57% qt-5.9.7 | 85.9 MB | ######1 | 62% qt-5.9.7 | 85.9 MB | ######6 | 66% qt-5.9.7 | 85.9 MB | ####### | 71% qt-5.9.7 | 85.9 MB | #######5 | 76% qt-5.9.7 | 85.9 MB | #######8 | 79% qt-5.9.7 | 85.9 MB | ########1 | 81% qt-5.9.7 | 85.9 MB | ########3 | 83% qt-5.9.7 | 85.9 MB | ########4 | 84% qt-5.9.7 | 85.9 MB | ########5 | 85% qt-5.9.7 | 85.9 MB | 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85.9 MB | #########4 | 94% qt-5.9.7 | 85.9 MB | #########4 | 94% qt-5.9.7 | 85.9 MB | #########4 | 95% qt-5.9.7 | 85.9 MB | #########4 | 95% qt-5.9.7 | 85.9 MB | #########5 | 95% qt-5.9.7 | 85.9 MB | #########5 | 95% qt-5.9.7 | 85.9 MB | #########5 | 96% qt-5.9.7 | 85.9 MB | #########5 | 96% qt-5.9.7 | 85.9 MB | #########6 | 96% qt-5.9.7 | 85.9 MB | #########6 | 96% qt-5.9.7 | 85.9 MB | #########6 | 97% qt-5.9.7 | 85.9 MB | #########6 | 97% qt-5.9.7 | 85.9 MB | #########7 | 97% qt-5.9.7 | 85.9 MB | #########7 | 97% qt-5.9.7 | 85.9 MB | #########7 | 98% qt-5.9.7 | 85.9 MB | #########7 | 98% qt-5.9.7 | 85.9 MB | #########8 | 98% qt-5.9.7 | 85.9 MB | #########8 | 98% qt-5.9.7 | 85.9 MB | #########8 | 99% qt-5.9.7 | 85.9 MB | #########8 | 99% qt-5.9.7 | 85.9 MB | #########9 | 99% qt-5.9.7 | 85.9 MB | #########9 | 99% qt-5.9.7 | 85.9 MB | #########9 | 100% qt-5.9.7 | 85.9 MB | #########9 | 100% qt-5.9.7 | 85.9 MB | ########## | 100% pcre-8.43 | 260 KB | | 0% pcre-8.43 | 260 KB | ########## | 100% libxml2-2.9.9 | 2.0 MB | | 0% libxml2-2.9.9 | 2.0 MB | #######7 | 78% libxml2-2.9.9 | 2.0 MB | ########## | 100% subprocess32-3.5.3 | 44 KB | | 0% subprocess32-3.5.3 | 44 KB | ########## | 100% jpeg-9b | 248 KB | | 0% jpeg-9b | 248 KB | ########## | 100% gst-plugins-base-1.1 | 6.3 MB | | 0% gst-plugins-base-1.1 | 6.3 MB | #####6 | 56% gst-plugins-base-1.1 | 6.3 MB | #######5 | 76% gst-plugins-base-1.1 | 6.3 MB | #########2 | 93% gst-plugins-base-1.1 | 6.3 MB | ########## | 100% fontconfig-2.13.0 | 291 KB | | 0% fontconfig-2.13.0 | 291 KB | ########## | 100% libxcb-1.13 | 502 KB | | 0% libxcb-1.13 | 502 KB | ########6 | 86% libxcb-1.13 | 502 KB | ########## | 100% libpng-1.6.37 | 364 KB | | 0% libpng-1.6.37 | 364 KB | ########## | 100% backports.functools_ | 9 KB | | 0% backports.functools_ | 9 KB | ########## | 100% glib-2.56.2 | 5.0 MB | | 0% glib-2.56.2 | 5.0 MB | ######1 | 61% glib-2.56.2 | 5.0 MB | #######9 | 80% glib-2.56.2 | 5.0 MB | #########4 | 94% glib-2.56.2 | 5.0 MB | ########## | 100% gstreamer-1.14.0 | 3.8 MB | | 0% gstreamer-1.14.0 | 3.8 MB | #######5 | 75% gstreamer-1.14.0 | 3.8 MB | #########8 | 98% gstreamer-1.14.0 | 3.8 MB | ########## | 100% cycler-0.10.0 | 13 KB | | 0% cycler-0.10.0 | 13 KB | ########## | 100% expat-2.2.6 | 187 KB | | 0% expat-2.2.6 | 187 KB | ########## | 100% icu-58.2 | 22.5 MB | | 0% icu-58.2 | 22.5 MB | #2 | 13% icu-58.2 | 22.5 MB | ###1 | 31% icu-58.2 | 22.5 MB | ##### | 51% icu-58.2 | 22.5 MB | ######9 | 69% icu-58.2 | 22.5 MB | ########2 | 83% icu-58.2 | 22.5 MB | #########2 | 93% icu-58.2 | 22.5 MB | #########9 | 100% icu-58.2 | 22.5 MB | ########## | 100% pyparsing-2.4.0 | 58 KB | | 0% pyparsing-2.4.0 | 58 KB | ########## | 100% xz-5.2.4 | 366 KB | | 0% xz-5.2.4 | 366 KB | ########## | 100% pytz-2019.1 | 236 KB | | 0% pytz-2019.1 | 236 KB | #########5 | 95% pytz-2019.1 | 236 KB | ########## | 100% freetype-2.9.1 | 822 KB | | 0% freetype-2.9.1 | 822 KB | ########2 | 83% freetype-2.9.1 | 822 KB | ########## | 100% pyqt-5.9.2 | 5.4 MB | | 0% pyqt-5.9.2 | 5.4 MB | #####7 | 58% pyqt-5.9.2 | 5.4 MB | #######5 | 76% pyqt-5.9.2 | 5.4 MB | #########3 | 93% pyqt-5.9.2 | 5.4 MB | ########## | 100% kiwisolver-1.1.0 | 91 KB | | 0% kiwisolver-1.1.0 | 91 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Creating symlinks to /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/bin and /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/lib Done. Miniconda installed in /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda Cache location: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/pkgs Will remove the following tarballs: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/pkgs -------------------------------------------------------------- pandocfilters-1.4.2-py27_1.tar.bz2 13 KB matplotlib-2.2.3-py27hb69df0a_0.tar.bz2 6.5 MB python-2.7.15-h9bab390_6.tar.bz2 12.8 MB configparser-3.7.4-py27_0.tar.bz2 41 KB requests-2.21.0-py27_0.tar.bz2 84 KB nbconvert-5.5.0-py_0.tar.bz2 381 KB libxml2-2.9.9-he19cac6_0.tar.bz2 2.0 MB send2trash-1.5.0-py27_0.tar.bz2 16 KB backports.functools_lru_cache-1.5-py27_1.tar.bz2 9 KB bleach-3.1.0-py27_0.tar.bz2 228 KB tk-8.6.8-hbc83047_0.tar.bz2 3.1 MB wcwidth-0.1.7-py27_0.tar.bz2 25 KB openssl-1.1.1a-h7b6447c_0.tar.bz2 5.0 MB libgcc-ng-8.2.0-hdf63c60_1.tar.bz2 7.6 MB idna-2.8-py27_0.tar.bz2 133 KB pycparser-2.19-py27_0.tar.bz2 173 KB tornado-5.1.1-py27h7b6447c_0.tar.bz2 643 KB ipython_genutils-0.2.0-py27h89fb69b_0.tar.bz2 38 KB pathlib2-2.3.3-py27_0.tar.bz2 31 KB glib-2.56.2-hd408876_0.tar.bz2 5.0 MB jinja2-2.10.1-py27_0.tar.bz2 181 KB cython-0.29.7-py27he6710b0_0.tar.bz2 2.1 MB sqlite-3.26.0-h7b6447c_0.tar.bz2 1.9 MB jpeg-9b-h024ee3a_2.tar.bz2 248 KB pysocks-1.6.8-py27_0.tar.bz2 22 KB more-itertools-5.0.0-py27_0.tar.bz2 86 KB simplegeneric-0.8.1-py27_2.tar.bz2 9 KB python-dateutil-2.8.0-py27_0.tar.bz2 279 KB zeromq-4.3.1-he6710b0_3.tar.bz2 666 KB subprocess32-3.5.3-py27h7b6447c_0.tar.bz2 44 KB gst-plugins-base-1.14.0-hbbd80ab_1.tar.bz2 6.3 MB pluggy-0.11.0-py_0.tar.bz2 20 KB ncurses-6.1-he6710b0_1.tar.bz2 958 KB readline-7.0-h7b6447c_5.tar.bz2 392 KB libxcb-1.13-h1bed415_1.tar.bz2 502 KB jupyter_core-4.4.0-py27_0.tar.bz2 62 KB libpng-1.6.37-hbc83047_0.tar.bz2 364 KB markupsafe-1.1.1-py27h7b6447c_0.tar.bz2 29 KB libsodium-1.0.16-h1bed415_0.tar.bz2 302 KB backports_abc-0.5-py_0.tar.bz2 13 KB cryptography-2.4.2-py27h1ba5d50_0.tar.bz2 605 KB pandoc-2.2.3.2-0.tar.bz2 20.8 MB pyopenssl-18.0.0-py27_0.tar.bz2 80 KB pip-18.1-py27_0.tar.bz2 1.8 MB pycosat-0.6.3-py27h14c3975_0.tar.bz2 103 KB pygments-2.4.0-py_0.tar.bz2 664 KB icu-58.2-h9c2bf20_1.tar.bz2 22.5 MB blas-1.0-openblas.tar.bz2 48 KB fontconfig-2.13.0-h9420a91_0.tar.bz2 291 KB backports.shutil_get_terminal_size-1.0.0-py27_2.tar.bz2 8 KB pyzmq-18.0.0-py27he6710b0_0.tar.bz2 463 KB terminado-0.8.2-py27_0.tar.bz2 22 KB pcre-8.43-he6710b0_0.tar.bz2 260 KB chardet-3.0.4-py27_1.tar.bz2 180 KB numpy-base-1.16.3-py27h2f8d375_0.tar.bz2 4.3 MB gmp-6.1.2-h6c8ec71_1.tar.bz2 744 KB pytz-2019.1-py_0.tar.bz2 236 KB pyqt-5.9.2-py27h05f1152_2.tar.bz2 5.4 MB nbformat-4.4.0-py27_0.tar.bz2 139 KB cffi-1.11.5-py27he75722e_1.tar.bz2 209 KB ruamel_yaml-0.15.46-py27h14c3975_0.tar.bz2 241 KB libedit-3.1.20170329-h6b74fdf_2.tar.bz2 172 KB ptyprocess-0.6.0-py27_0.tar.bz2 22 KB openssl-1.1.1b-h7b6447c_1.tar.bz2 4.0 MB ca-certificates-2019.1.23-0.tar.bz2 126 KB cycler-0.10.0-py27_0.tar.bz2 13 KB certifi-2019.3.9-py27_0.tar.bz2 155 KB ipaddress-1.0.22-py27_0.tar.bz2 32 KB qt-5.9.7-h5867ecd_1.tar.bz2 85.9 MB pytest-4.5.0-py27_0.tar.bz2 358 KB scipy-1.2.1-py27he2b7bc3_0.tar.bz2 17.7 MB urllib3-1.24.1-py27_0.tar.bz2 147 KB conda-4.5.12-py27_0.tar.bz2 1.0 MB mistune-0.8.4-py27h7b6447c_0.tar.bz2 53 KB pyrsistent-0.14.11-py27h7b6447c_0.tar.bz2 88 KB singledispatch-3.4.0.3-py27_0.tar.bz2 15 KB funcsigs-1.0.2-py27h83f16ab_0.tar.bz2 20 KB nomkl-3.0-0.tar.bz2 48 KB expat-2.2.6-he6710b0_0.tar.bz2 187 KB yaml-0.1.7-had09818_2.tar.bz2 85 KB libstdcxx-ng-8.2.0-hdf63c60_1.tar.bz2 2.9 MB conda-env-2.6.0-1.tar.bz2 3 KB traitlets-4.3.2-py27_0.tar.bz2 128 KB prompt_toolkit-1.0.15-py27h1b593e1_0.tar.bz2 333 KB ipykernel-4.10.0-py27_0.tar.bz2 145 KB numpy-1.16.3-py27h99e49ec_0.tar.bz2 49 KB futures-3.2.0-py27_0.tar.bz2 24 KB jsonschema-3.0.1-py27_0.tar.bz2 86 KB freetype-2.9.1-h8a8886c_1.tar.bz2 822 KB libgfortran-ng-7.3.0-hdf63c60_0.tar.bz2 1.3 MB ipython-5.8.0-py27_0.tar.bz2 1.0 MB xz-5.2.4-h14c3975_4.tar.bz2 366 KB ca-certificates-2018.03.07-0.tar.bz2 124 KB testpath-0.4.2-py27_0.tar.bz2 91 KB libuuid-1.0.3-h1bed415_2.tar.bz2 16 KB atomicwrites-1.3.0-py27_1.tar.bz2 13 KB dbus-1.13.6-h746ee38_0.tar.bz2 587 KB certifi-2018.11.29-py27_0.tar.bz2 146 KB entrypoints-0.3-py27_0.tar.bz2 12 KB prometheus_client-0.6.0-py27_0.tar.bz2 69 KB enum34-1.1.6-py27_1.tar.bz2 57 KB jupyter_client-5.2.4-py27_0.tar.bz2 125 KB pyparsing-2.4.0-py_0.tar.bz2 58 KB functools32-3.2.3.2-py27_1.tar.bz2 23 KB backports-1.0-py27_1.tar.bz2 3 KB webencodings-0.5.1-py27_1.tar.bz2 19 KB libopenblas-0.3.3-h5a2b251_3.tar.bz2 7.6 MB notebook-5.7.8-py27_0.tar.bz2 7.2 MB zlib-1.2.11-h7b6447c_3.tar.bz2 120 KB attrs-19.1.0-py27_1.tar.bz2 56 KB wheel-0.32.3-py27_0.tar.bz2 34 KB sip-4.19.8-py27hf484d3e_0.tar.bz2 291 KB scandir-1.10.0-py27h7b6447c_0.tar.bz2 32 KB pexpect-4.7.0-py27_0.tar.bz2 80 KB decorator-4.4.0-py27_1.tar.bz2 18 KB py-1.8.0-py27_0.tar.bz2 137 KB kiwisolver-1.1.0-py27he6710b0_0.tar.bz2 91 KB defusedxml-0.6.0-py_0.tar.bz2 23 KB conda-4.6.14-py27_0.tar.bz2 2.1 MB setuptools-40.6.3-py27_0.tar.bz2 627 KB pickleshare-0.7.5-py27_0.tar.bz2 12 KB six-1.12.0-py27_0.tar.bz2 22 KB libffi-3.2.1-hd88cf55_4.tar.bz2 43 KB asn1crypto-0.24.0-py27_0.tar.bz2 155 KB gstreamer-1.14.0-hb453b48_1.tar.bz2 3.8 MB --------------------------------------------------- Total: 258.0 MB Removed pandocfilters-1.4.2-py27_1.tar.bz2 Removed matplotlib-2.2.3-py27hb69df0a_0.tar.bz2 Removed python-2.7.15-h9bab390_6.tar.bz2 Removed configparser-3.7.4-py27_0.tar.bz2 Removed requests-2.21.0-py27_0.tar.bz2 Removed nbconvert-5.5.0-py_0.tar.bz2 Removed libxml2-2.9.9-he19cac6_0.tar.bz2 Removed send2trash-1.5.0-py27_0.tar.bz2 Removed backports.functools_lru_cache-1.5-py27_1.tar.bz2 Removed bleach-3.1.0-py27_0.tar.bz2 Removed tk-8.6.8-hbc83047_0.tar.bz2 Removed wcwidth-0.1.7-py27_0.tar.bz2 Removed openssl-1.1.1a-h7b6447c_0.tar.bz2 Removed libgcc-ng-8.2.0-hdf63c60_1.tar.bz2 Removed idna-2.8-py27_0.tar.bz2 Removed pycparser-2.19-py27_0.tar.bz2 Removed tornado-5.1.1-py27h7b6447c_0.tar.bz2 Removed ipython_genutils-0.2.0-py27h89fb69b_0.tar.bz2 Removed pathlib2-2.3.3-py27_0.tar.bz2 Removed glib-2.56.2-hd408876_0.tar.bz2 Removed jinja2-2.10.1-py27_0.tar.bz2 Removed cython-0.29.7-py27he6710b0_0.tar.bz2 Removed sqlite-3.26.0-h7b6447c_0.tar.bz2 Removed jpeg-9b-h024ee3a_2.tar.bz2 Removed pysocks-1.6.8-py27_0.tar.bz2 Removed more-itertools-5.0.0-py27_0.tar.bz2 Removed simplegeneric-0.8.1-py27_2.tar.bz2 Removed python-dateutil-2.8.0-py27_0.tar.bz2 Removed zeromq-4.3.1-he6710b0_3.tar.bz2 Removed subprocess32-3.5.3-py27h7b6447c_0.tar.bz2 Removed gst-plugins-base-1.14.0-hbbd80ab_1.tar.bz2 Removed pluggy-0.11.0-py_0.tar.bz2 Removed ncurses-6.1-he6710b0_1.tar.bz2 Removed readline-7.0-h7b6447c_5.tar.bz2 Removed libxcb-1.13-h1bed415_1.tar.bz2 Removed jupyter_core-4.4.0-py27_0.tar.bz2 Removed libpng-1.6.37-hbc83047_0.tar.bz2 Removed markupsafe-1.1.1-py27h7b6447c_0.tar.bz2 Removed libsodium-1.0.16-h1bed415_0.tar.bz2 Removed backports_abc-0.5-py_0.tar.bz2 Removed cryptography-2.4.2-py27h1ba5d50_0.tar.bz2 Removed pandoc-2.2.3.2-0.tar.bz2 Removed pyopenssl-18.0.0-py27_0.tar.bz2 Removed pip-18.1-py27_0.tar.bz2 Removed pycosat-0.6.3-py27h14c3975_0.tar.bz2 Removed pygments-2.4.0-py_0.tar.bz2 Removed icu-58.2-h9c2bf20_1.tar.bz2 Removed blas-1.0-openblas.tar.bz2 Removed fontconfig-2.13.0-h9420a91_0.tar.bz2 Removed backports.shutil_get_terminal_size-1.0.0-py27_2.tar.bz2 Removed pyzmq-18.0.0-py27he6710b0_0.tar.bz2 Removed terminado-0.8.2-py27_0.tar.bz2 Removed pcre-8.43-he6710b0_0.tar.bz2 Removed chardet-3.0.4-py27_1.tar.bz2 Removed numpy-base-1.16.3-py27h2f8d375_0.tar.bz2 Removed gmp-6.1.2-h6c8ec71_1.tar.bz2 Removed pytz-2019.1-py_0.tar.bz2 Removed pyqt-5.9.2-py27h05f1152_2.tar.bz2 Removed nbformat-4.4.0-py27_0.tar.bz2 Removed cffi-1.11.5-py27he75722e_1.tar.bz2 Removed ruamel_yaml-0.15.46-py27h14c3975_0.tar.bz2 Removed libedit-3.1.20170329-h6b74fdf_2.tar.bz2 Removed ptyprocess-0.6.0-py27_0.tar.bz2 Removed openssl-1.1.1b-h7b6447c_1.tar.bz2 Removed ca-certificates-2019.1.23-0.tar.bz2 Removed cycler-0.10.0-py27_0.tar.bz2 Removed certifi-2019.3.9-py27_0.tar.bz2 Removed ipaddress-1.0.22-py27_0.tar.bz2 Removed qt-5.9.7-h5867ecd_1.tar.bz2 Removed pytest-4.5.0-py27_0.tar.bz2 Removed scipy-1.2.1-py27he2b7bc3_0.tar.bz2 Removed urllib3-1.24.1-py27_0.tar.bz2 Removed conda-4.5.12-py27_0.tar.bz2 Removed mistune-0.8.4-py27h7b6447c_0.tar.bz2 Removed pyrsistent-0.14.11-py27h7b6447c_0.tar.bz2 Removed singledispatch-3.4.0.3-py27_0.tar.bz2 Removed funcsigs-1.0.2-py27h83f16ab_0.tar.bz2 Removed nomkl-3.0-0.tar.bz2 Removed expat-2.2.6-he6710b0_0.tar.bz2 Removed yaml-0.1.7-had09818_2.tar.bz2 Removed libstdcxx-ng-8.2.0-hdf63c60_1.tar.bz2 Removed conda-env-2.6.0-1.tar.bz2 Removed traitlets-4.3.2-py27_0.tar.bz2 Removed prompt_toolkit-1.0.15-py27h1b593e1_0.tar.bz2 Removed ipykernel-4.10.0-py27_0.tar.bz2 Removed numpy-1.16.3-py27h99e49ec_0.tar.bz2 Removed futures-3.2.0-py27_0.tar.bz2 Removed jsonschema-3.0.1-py27_0.tar.bz2 Removed freetype-2.9.1-h8a8886c_1.tar.bz2 Removed libgfortran-ng-7.3.0-hdf63c60_0.tar.bz2 Removed ipython-5.8.0-py27_0.tar.bz2 Removed xz-5.2.4-h14c3975_4.tar.bz2 Removed ca-certificates-2018.03.07-0.tar.bz2 Removed testpath-0.4.2-py27_0.tar.bz2 Removed libuuid-1.0.3-h1bed415_2.tar.bz2 Removed atomicwrites-1.3.0-py27_1.tar.bz2 Removed dbus-1.13.6-h746ee38_0.tar.bz2 Removed certifi-2018.11.29-py27_0.tar.bz2 Removed entrypoints-0.3-py27_0.tar.bz2 Removed prometheus_client-0.6.0-py27_0.tar.bz2 Removed enum34-1.1.6-py27_1.tar.bz2 Removed jupyter_client-5.2.4-py27_0.tar.bz2 Removed pyparsing-2.4.0-py_0.tar.bz2 Removed functools32-3.2.3.2-py27_1.tar.bz2 Removed backports-1.0-py27_1.tar.bz2 Removed webencodings-0.5.1-py27_1.tar.bz2 Removed libopenblas-0.3.3-h5a2b251_3.tar.bz2 Removed notebook-5.7.8-py27_0.tar.bz2 Removed zlib-1.2.11-h7b6447c_3.tar.bz2 Removed attrs-19.1.0-py27_1.tar.bz2 Removed wheel-0.32.3-py27_0.tar.bz2 Removed sip-4.19.8-py27hf484d3e_0.tar.bz2 Removed scandir-1.10.0-py27h7b6447c_0.tar.bz2 Removed pexpect-4.7.0-py27_0.tar.bz2 Removed decorator-4.4.0-py27_1.tar.bz2 Removed py-1.8.0-py27_0.tar.bz2 Removed kiwisolver-1.1.0-py27he6710b0_0.tar.bz2 Removed defusedxml-0.6.0-py_0.tar.bz2 Removed conda-4.6.14-py27_0.tar.bz2 Removed setuptools-40.6.3-py27_0.tar.bz2 Removed pickleshare-0.7.5-py27_0.tar.bz2 Removed six-1.12.0-py27_0.tar.bz2 Removed libffi-3.2.1-hd88cf55_4.tar.bz2 Removed asn1crypto-0.24.0-py27_0.tar.bz2 Removed gstreamer-1.14.0-hb453b48_1.tar.bz2 Cache location: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/pkgs Will remove the following packages: /apps/amber/18_tools-19_openmpi-4.0.1_gnu-7.4.1/miniconda/pkgs -------------------------------------------------------------- nomkl-3.0-0 281 KB ca-certificates-2018.03.07-0 231 KB pip-18.1-py27_0 7.6 MB certifi-2018.11.29-py27_0 285 KB openssl-1.1.1a-h7b6447c_0 22.6 MB conda-env-2.6.0-1 6 KB conda-4.5.12-py27_0 6.3 MB blas-1.0-openblas 281 KB numpy-1.16.3-py27h99e49ec_0 256 KB --------------------------------------------------- Total: 37.9 MB removing nomkl-3.0-0 removing ca-certificates-2018.03.07-0 removing pip-18.1-py27_0 removing certifi-2018.11.29-py27_0 removing openssl-1.1.1a-h7b6447c_0 removing conda-env-2.6.0-1 removing conda-4.5.12-py27_0 removing blas-1.0-openblas removing numpy-1.16.3-py27h99e49ec_0