This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by fftw configure 3.3, which was generated by GNU Autoconf 2.67. Invocation command line was $ ./configure --prefix=/home/prabir/SOFTWARE/AMBER/AMBER14/amber14 --libdir=/home/prabir/SOFTWARE/AMBER/AMBER14/amber14/lib --enable-static --enable-shared --enable-mpi=yes --enable-sse2=yes CC=gcc CFLAGS=-fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native F77=gfortran FFLAGS=-fPIC -O3 -mtune=native FLIBS=-lgfortran -w ## --------- ## ## Platform. ## ## --------- ## hostname = schooner2.oscer.ou.edu uname -m = x86_64 uname -r = 3.10.0-693.11.6.el7.x86_64 uname -s = Linux uname -v = #1 SMP Thu Jan 4 01:06:37 UTC 2018 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/oscer/software/openmpi/1.10.3/intel/avx-shm-mxm/bin PATH: /opt/oscer/software/intel/itac/9.1.1.017/intel64/bin PATH: /opt/oscer/software/intel/compilers_and_libraries_2016.0.109/linux/bin/intel64 PATH: /home/prabir/SOFTWARE/AMBER/AMBER14/amber14/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /opt/ibutils/bin PATH: /opt/dell/srvadmin/bin PATH: /home/prabir/.local/bin PATH: /home/prabir/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2844: checking for a BSD-compatible install configure:2912: result: /usr/bin/install -c configure:2923: checking whether build environment is sane configure:2973: result: yes configure:3114: checking for a thread-safe mkdir -p configure:3153: result: /usr/bin/mkdir -p configure:3166: checking for gawk configure:3182: found /usr/bin/gawk configure:3193: result: gawk configure:3204: checking whether make sets $(MAKE) configure:3226: result: yes configure:3310: checking whether to enable maintainer-specific portions of Makefiles configure:3319: result: no configure:3367: checking build system type configure:3381: result: x86_64-unknown-linux-gnu configure:3401: checking host system type configure:3414: result: x86_64-unknown-linux-gnu configure:3851: checking for gcc configure:3878: result: gcc configure:4107: checking for C compiler version configure:4116: gcc --version >&5 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-11) Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4127: $? = 0 configure:4116: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 4.8.5 20150623 (Red Hat 4.8.5-11) (GCC) configure:4127: $? = 0 configure:4116: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:4127: $? = 4 configure:4116: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:4127: $? = 4 configure:4147: checking whether the C compiler works configure:4169: gcc -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:4173: $? = 0 configure:4221: result: yes configure:4224: checking for C compiler default output file name configure:4226: result: a.out configure:4232: checking for suffix of executables configure:4239: gcc -o conftest -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:4243: $? = 0 configure:4265: result: configure:4287: checking whether we are cross compiling configure:4295: gcc -o conftest -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:4299: $? = 0 configure:4306: ./conftest configure:4310: $? = 0 configure:4325: result: no configure:4330: checking for suffix of object files configure:4352: gcc -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:4356: $? = 0 configure:4377: result: o configure:4381: checking whether we are using the GNU C compiler configure:4400: gcc -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:4400: $? = 0 configure:4409: result: yes configure:4418: checking whether gcc accepts -g configure:4438: gcc -c -g conftest.c >&5 configure:4438: $? = 0 configure:4479: result: yes configure:4496: checking for gcc option to accept ISO C89 configure:4560: gcc -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:4560: $? = 0 configure:4573: result: none needed configure:4604: checking for style of include used by make configure:4632: result: GNU configure:4657: checking dependency style of gcc configure:4767: result: gcc3 configure:4783: checking whether gcc and cc understand -c and -o together configure:4814: gcc -c conftest.c -o conftest2.o >&5 configure:4818: $? = 0 configure:4824: gcc -c conftest.c -o conftest2.o >&5 configure:4828: $? = 0 configure:4839: cc -c conftest.c >&5 configure:4843: $? = 0 configure:4851: cc -c conftest.c -o conftest2.o >&5 configure:4855: $? = 0 configure:4861: cc -c conftest.c -o conftest2.o >&5 configure:4865: $? = 0 configure:4883: result: yes configure:4910: checking for C compiler vendor configure:4934: gcc -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 conftest.c: In function 'main': conftest.c:19:7: error: 'thisisanerror' undeclared (first use in this function) thisisanerror; ^ conftest.c:19:7: note: each undeclared identifier is reported only once for each function it appears in configure:4934: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(__ICC) || defined(__ECC) || defined(__INTEL_COMPILER)) | thisisanerror; | #endif | | ; | return 0; | } configure:4934: gcc -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 conftest.c: In function 'main': conftest.c:19:7: error: 'thisisanerror' undeclared (first use in this function) thisisanerror; ^ conftest.c:19:7: note: each undeclared identifier is reported only once for each function it appears in configure:4934: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(__xlc__) || defined(__xlC__) || defined(__IBMC__) || defined(__IBMCPP__)) | thisisanerror; | #endif | | ; | return 0; | } configure:4934: gcc -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 conftest.c: In function 'main': conftest.c:19:7: error: 'thisisanerror' undeclared (first use in this function) thisisanerror; ^ conftest.c:19:7: note: each undeclared identifier is reported only once for each function it appears in configure:4934: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(__PATHCC__) || defined(__PATHSCALE__)) | thisisanerror; | #endif | | ; | return 0; | } configure:4934: gcc -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:4934: $? = 0 configure:4941: result: gnu configure:4948: checking for gcc option to accept ISO C99 configure:5097: gcc -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 conftest.c:63:29: error: expected ';', ',' or ')' before 'text' test_restrict (ccp restrict text) ^ conftest.c: In function 'main': conftest.c:117:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' char *restrict newvar = "Another string"; ^ conftest.c:117:18: error: 'newvar' undeclared (first use in this function) conftest.c:117:18: note: each undeclared identifier is reported only once for each function it appears in conftest.c:127:3: error: 'for' loop initial declarations are only allowed in C99 mode for (int i = 0; i < ia->datasize; ++i) ^ conftest.c:127:3: note: use option -std=c99 or -std=gnu99 to compile your code configure:5097: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:5097: gcc -std=gnu99 -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:5097: $? = 0 configure:5117: result: -std=gnu99 configure:5219: checking for gcc -std=gnu99 option to accept ISO Standard C configure:5233: result: -std=gnu99 configure:5238: checking whether ln -s works configure:5242: result: yes configure:5249: checking whether make sets $(MAKE) configure:5271: result: yes configure:5608: checking for a sed that does not truncate output configure:5672: result: /usr/bin/sed configure:5690: checking for grep that handles long lines and -e configure:5748: result: /usr/bin/grep configure:5753: checking for egrep configure:5815: result: /usr/bin/grep -E configure:5820: checking for fgrep configure:5882: result: /usr/bin/grep -F configure:5917: checking for ld used by gcc -std=gnu99 configure:5984: result: /usr/bin/ld configure:5991: checking if the linker (/usr/bin/ld) is GNU ld configure:6006: result: yes configure:6018: checking for BSD- or MS-compatible name lister (nm) configure:6067: result: /usr/bin/nm -B configure:6185: checking the name lister (/usr/bin/nm -B) interface configure:6192: gcc -std=gnu99 -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:6195: /usr/bin/nm -B "conftest.o" configure:6198: output 0000000000000000 B some_variable configure:6205: result: BSD nm configure:6209: checking the maximum length of command line arguments configure:6329: result: 3458764513820540925 configure:6346: checking whether the shell understands some XSI constructs configure:6356: result: yes configure:6360: checking whether the shell understands "+=" configure:6366: result: yes configure:6401: checking for /usr/bin/ld option to reload object files configure:6408: result: -r configure:6477: checking for objdump configure:6504: result: objdump configure:6533: checking how to recognize dependent libraries configure:6729: result: pass_all configure:6789: checking for ar configure:6805: found /usr/bin/ar configure:6816: result: ar configure:6894: checking for strip configure:6910: found /usr/bin/strip configure:6921: result: strip configure:6993: checking for ranlib configure:7009: found /usr/bin/ranlib configure:7020: result: ranlib configure:7110: checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object configure:7228: gcc -std=gnu99 -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:7231: $? = 0 configure:7235: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:7238: $? = 0 configure:7292: gcc -std=gnu99 -o conftest -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c conftstm.o >&5 configure:7295: $? = 0 configure:7333: result: ok configure:7428: gcc -std=gnu99 -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native conftest.c >&5 configure:7431: $? = 0 configure:8141: checking how to run the C preprocessor configure:8172: gcc -std=gnu99 -E conftest.c In file included from conftest.c:14:0: /opt/oscer/software/intel/compilers_and_libraries_2016.0.109/linux/compiler/include/limits.h:36:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:8172: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:8172: gcc -std=gnu99 -E conftest.c In file included from conftest.c:14:0: /opt/oscer/software/intel/compilers_and_libraries_2016.0.109/linux/compiler/include/limits.h:36:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:8172: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:8172: gcc -std=gnu99 -E -traditional-cpp conftest.c In file included from /usr/include/features.h:376:0, from /usr/include/assert.h:37, from conftest.c:17: /usr/include/sys/cdefs.h:31:3: error: #error "You need a ISO C conforming compiler to use the glibc headers" # error "You need a ISO C conforming compiler to use the glibc headers" ^ configure:8172: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:8172: gcc -std=gnu99 -E -traditional-cpp conftest.c In file included from /usr/include/features.h:376:0, from /usr/include/assert.h:37, from conftest.c:17: /usr/include/sys/cdefs.h:31:3: error: #error "You need a ISO C conforming compiler to use the glibc headers" # error "You need a ISO C conforming compiler to use the glibc headers" ^ configure:8172: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:8172: /lib/cpp conftest.c In file included from conftest.c:14:0: /opt/oscer/software/intel/compilers_and_libraries_2016.0.109/linux/compiler/include/limits.h:36:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:8172: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:8172: /lib/cpp conftest.c In file included from conftest.c:14:0: /opt/oscer/software/intel/compilers_and_libraries_2016.0.109/linux/compiler/include/limits.h:36:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:8172: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:8211: result: /lib/cpp configure:8231: /lib/cpp conftest.c In file included from conftest.c:14:0: /opt/oscer/software/intel/compilers_and_libraries_2016.0.109/linux/compiler/include/limits.h:36:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:8231: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:8231: /lib/cpp conftest.c In file included from conftest.c:14:0: /opt/oscer/software/intel/compilers_and_libraries_2016.0.109/linux/compiler/include/limits.h:36:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:8231: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "fftw" | #define PACKAGE_TARNAME "fftw" | #define PACKAGE_VERSION "3.3" | #define PACKAGE_STRING "fftw 3.3" | #define PACKAGE_BUGREPORT "fftw@fftw.org" | #define PACKAGE_URL "" | #define PACKAGE "fftw" | #define VERSION "3.3" | #define FFTW_ENABLE_ALLOCA 1 | #define HAVE_SSE2 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:8261: error: in `/home/prabir/SOFTWARE/AMBER/AMBER14/amber14/AmberTools/src/fftw-3.3': configure:8263: error: C preprocessor "/lib/cpp" fails sanity check See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_env_CC_set=set ac_cv_env_CC_value=gcc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_F77_set=set ac_cv_env_F77_value=gfortran ac_cv_env_FFLAGS_set=set ac_cv_env_FFLAGS_value='-fPIC -O3 -mtune=native' ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPICC_set= ac_cv_env_MPICC_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_host=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP=/lib/cpp ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_cc_stdc=-std=gnu99 ac_cv_prog_make_make_set=yes am_cv_CC_dependencies_compiler_type=gcc3 ax_cv_c_compiler_vendor=gnu lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_path_LD=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_gnu_ld=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=3458764513820540925 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/prabir/SOFTWARE/AMBER/AMBER14/amber14/AmberTools/src/fftw-3.3/missing --run aclocal-1.11' ALLOCA='' ALTIVEC_CFLAGS='' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /home/prabir/SOFTWARE/AMBER/AMBER14/amber14/AmberTools/src/fftw-3.3/missing --run tar' AR='ar' AS='as' AUTOCONF='${SHELL} /home/prabir/SOFTWARE/AMBER/AMBER14/amber14/AmberTools/src/fftw-3.3/missing --run autoconf' AUTOHEADER='${SHELL} /home/prabir/SOFTWARE/AMBER/AMBER14/amber14/AmberTools/src/fftw-3.3/missing --run autoheader' AUTOMAKE='${SHELL} /home/prabir/SOFTWARE/AMBER/AMBER14/amber14/AmberTools/src/fftw-3.3/missing --run automake-1.11' AVX_CFLAGS='' AWK='gawk' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -O3 -mtune=native' CHECK_PL_OPTS='' COMBINED_THREADS_FALSE='' COMBINED_THREADS_TRUE='' CPP='/lib/cpp' CPPFLAGS='' CYGPATH_W='echo' C_FFTW_R2R_KIND='' C_MPI_FINT='' DEFS='' DEPDIR='.deps' DLLTOOL='dlltool' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' EXEEXT='' F77='gfortran' FFLAGS='-fPIC -O3 -mtune=native' FGREP='/usr/bin/grep -F' FLIBS='-lgfortran -w' GREP='/usr/bin/grep' HAVE_ALTIVEC_FALSE='' HAVE_ALTIVEC_TRUE='#' HAVE_AVX_FALSE='' HAVE_AVX_TRUE='#' HAVE_MIPS_PS_FALSE='' HAVE_MIPS_PS_TRUE='#' HAVE_SSE2_FALSE='#' HAVE_SSE2_TRUE='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='' LDOUBLE_FALSE='' LDOUBLE_TRUE='#' LIBOBJS='' LIBQUADMATH='' LIBS='' LIBTOOL='' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/prabir/SOFTWARE/AMBER/AMBER14/amber14/AmberTools/src/fftw-3.3/missing --run makeinfo' MKDIR_P='/usr/bin/mkdir -p' MPICC='' MPILIBS='' MPIRUN='' MPI_FALSE='' MPI_TRUE='' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OCAMLBUILD='' OPENMP_CFLAGS='' OPENMP_FALSE='' OPENMP_TRUE='' OTOOL64='' OTOOL='' PACKAGE='fftw' PACKAGE_BUGREPORT='fftw@fftw.org' PACKAGE_NAME='fftw' PACKAGE_STRING='fftw 3.3' PACKAGE_TARNAME='fftw' PACKAGE_URL='' PACKAGE_VERSION='3.3' PATH_SEPARATOR=':' POW_LIB='' PRECISION='d' PREC_SUFFIX='' PTHREAD_CC='' PTHREAD_CFLAGS='' PTHREAD_LIBS='' QUAD_FALSE='' QUAD_TRUE='#' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHARED_VERSION_INFO='6:0:3' SHELL='/bin/sh' SINGLE_FALSE='' SINGLE_TRUE='#' SMP_FALSE='' SMP_TRUE='' SSE2_CFLAGS='' STACK_ALIGN_CFLAGS='' STRIP='strip' THREADLIBS='' THREADS_FALSE='' THREADS_TRUE='' VERSION='3.3' ac_ct_CC='gcc' ac_ct_DUMPBIN='' ac_ct_F77='' acx_pthread_config='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/prabir/SOFTWARE/AMBER/AMBER14/amber14/AmberTools/src/fftw-3.3/install-sh' libdir='/home/prabir/SOFTWARE/AMBER/AMBER14/amber14/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' lt_ECHO='echo' mandir='${datarootdir}/man' mkdir_p='/usr/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/prabir/SOFTWARE/AMBER/AMBER14/amber14' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "fftw" #define PACKAGE_TARNAME "fftw" #define PACKAGE_VERSION "3.3" #define PACKAGE_STRING "fftw 3.3" #define PACKAGE_BUGREPORT "fftw@fftw.org" #define PACKAGE_URL "" #define PACKAGE "fftw" #define VERSION "3.3" #define FFTW_ENABLE_ALLOCA 1 #define HAVE_SSE2 1 configure: exit 1