Re: [AMBER] confusion of choosing force field

From: Pavlína Pokorná <>
Date: Tue, 26 Feb 2019 15:41:19 +0100


Use both of the force fields You have mentioned, each will describe the
respective part of Your system. Also read some papers on protein-DNA


On Tue, Feb 26, 2019 at 1:54 PM Sasthi Charan Mandal <>

> Dear sir/madam,
> I am trying to simulate protein-dna complex. I am preparing the
> system using ambertools 16. It is saying that for dna the recommended force
> field is bsc1 and for protein ff14SB. So for the protein-dna complex I can
> not find any suitable force field in ambertools tutorial. It would be very
> helpful if someone suggest any force field for the above system.
> with regards
> Sasthi
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Received on Tue Feb 26 2019 - 07:00:03 PST
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