Re: [AMBER] Convert prmtop to PSF file in Cpptraj

From: Fulbabu Sk <phd1701171005.iiti.ac.in>
Date: Wed, 13 Feb 2019 20:28:22 +0530

Yes! Thank you so much for your prompt response!

On Wed 13 Feb, 2019, 8:01 PM Daniel Roe <daniel.r.roe.gmail.com wrote:

> Just to clarify, you want something like:
>
> parm myparm.parm7
> parmwrite out myparm.psf
>
> -Dan
>
> On Wed, Feb 13, 2019 at 9:10 AM Fulbabu Sk <phd1701171005.iiti.ac.in>
> wrote:
> >
> > Got it.
> >
> > On Wed 13 Feb, 2019, 7:04 PM Daniel Roe <daniel.r.roe.gmail.com wrote:
> >>
> >> Hi,
> >>
> >> First, note that the psf files generated by cpptraj are intended for
> use with visualization programs or for analysis - they are not intended for
> dynamics. For conversion for dynamics purposes you’ll havr better luck with
> parmed.
> >>
> >> That said, giving the topology a .psf extension should be enough to
> write in psf format.
> >>
> >> Hope this helps,
> >>
> >> -Dan
> >>
> >> On Sat, Feb 9, 2019 at 3:40 PM Fulbabu Sk <phd1701171005.iiti.ac.in>
> wrote:
> >>>
> >>> Dear Amber user,
> >>> Can somebody tell me how to convert amber prmtop file PSF file in
> Cpptraj?
> >>>
> >>>
> >>>
> >>>
> >>>
> >>> ***************
> >>> Kind regards
> >>>
> >>> *Md Fulbabu Sk*
> >>> _______________________________________________
> >>> AMBER mailing list
> >>> AMBER.ambermd.org
> >>> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Wed Feb 13 2019 - 07:00:03 PST
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