Re: [AMBER] cpptraj

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Tue, 5 Feb 2019 11:17:36 -0500

Hi,

On Tue, Feb 5, 2019 at 9:51 AM MYRIAN TORRES RICO
<myriam.torres.iiq.csic.es> wrote:
>
> 1)Why does it appears 3 atoms in :2242? (I checked the file.pdb and
> there is a single atom with this number)

The ':' symbol means "residue", so you are selecting residue 2242 here.

> 2)this format is correct? what is the different if I write .2242 or
> :2242 in this line?

The '.' symbol means "atom", so that seems like what you want. Check
out the cpptraj mask syntax section of the Amber manual (29.2.2) for
details. In more recent versions of cpptraj you can also type 'help
Mask' for syntax hints.

-Dan

>
> Thanks and Regards
>
>
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Received on Tue Feb 05 2019 - 08:30:04 PST
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