source leaprc.protein.ff14SB
source leaprc.GLYCAM_06j-1
source leaprc.gaff2
#source leaprc.water.tip3p
#loadamberparams frcmod.ionsjc_tip3p
#loadamberparams  frcmod.ions1lm_126_tip3p
loadamberparams l1-lig.frcmod
loadamberprep l1-lig.prep
lig = loadPdb "l1-lig.pdb"
check lig
#addions bglu1 Na+ 0
#saveAmberParm bglu1 gas_bglu1.top gas_bglu1.crd
#savepdb bglu1 bglu1.pdb
#solvateBox bglu1 TIP3PBOX 14.0
#addIons2 bglu1 Cl- 75.322
#addIons2 bglu1 Na+ 75.322
#saveAmberParm bglu1 solvated_bglu1.top solvated_bglu1.crd
#quit 
