Re: [AMBER] Question about stripping waters

From: Maria Clelia Milletti <mmilletti.emich.edu>
Date: Tue, 23 Oct 2018 11:24:37 -0400

that seems to work better. It strips most of the water molecules; however,
the water molecules it does not strip are at least 12 A away from residues
543-566. I wanted to strip all waters except for the ones within 6 A of
546-566.
I have attached input, output and an image of the pdb file.
Maria C. Milletti
Professor of Chemistry
503A Science Complex
Eastern Michigan University
(734) 487-1183


On Sat, Oct 20, 2018 at 5:24 PM David Case <david.case.rutgers.edu> wrote:

> On Fri, Oct 19, 2018, Maria Clelia Milletti wrote:
>
> > Error: [strip] Not all arguments handled: [ !(:543-566<:3.0) ]
> >
> > > > strip :WAT !(:543-566<:5.0)
>
> The strip command takes only one mask, but you are giving it two masks.
> Combine them, perhaps like this: "strip :WAT&!(:543-566<:5.0)"
>
> ...dac
>
>
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WATstripped.png
(image/png attachment: WATstripped.png)

Received on Tue Oct 23 2018 - 08:30:02 PDT
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