[AMBER] Cationic dummy Zinc atom in accelerated molecular dynamics

From: M RCC <mkr3j2c1.gmail.com>
Date: Wed, 10 Oct 2018 18:36:18 +0530

Dear Amber users,

 I have treated zinc atoms in my protein as cationic dummies as referred
here (*https://www.mayo.edu/research/labs/computer-aided-molecular-design/projects/zinc-protein-simulations-using-cationic-dummy-atom-cada-approach
<https://www.mayo.edu/research/labs/computer-aided-molecular-design/projects/zinc-protein-simulations-using-cationic-dummy-atom-cada-approach>*
)

Now I want to check the conformational ensemble of protein using
accelerated MD simulation.

Can I use the same parameter and topology files?
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Received on Wed Oct 10 2018 - 06:30:03 PDT