[AMBER] Problem in saving amber prmtop file from DNA pdb file creacted using server http://structure.usc.edu/make-na/server.html) ?

From: Subrata Paul <paul.subrata34.gmail.com>
Date: Thu, 4 Oct 2018 13:07:08 +0530

Dear Sir/ma'am

I have created a DNA pdb file using server
(http://structure.usc.edu/make-na/server.html) to create a pdb. When I
try to load this pdb in xleap it shows missing new atom types and
could not able to save prmtop and inpcrd file for MD simulation

How can I solve this problem

-- 
*With Best RegardsDr. Subrata PaulUGC-Dr. D. S. Kothari Post Doctoral
FellowDepartment of Chemical Sciences*
*Tezpur University*
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Oct 04 2018 - 01:00:02 PDT
Custom Search