Dear Chhaya
Check the cpptraj manual. You can use trajin for this following the syntax
Trajin yourtrajectory.nc start stop offset
Trajout yourshortertrajectory.nc
Run
Set the offset to a value of 10 or 100 or whatever you think is appropriate
and the trajout will write every 10th or 100th frame to a new trajectory.
Btw usually the ".out" is the file containing energy info etc and not the
trajectory.
Kind regards
Charles-Alexandre Mattelaer
Op vr 13 jul. 2018 19:38 schreef Chhaya Singh <chhayasingh014.gmail.com>:
> I have a file md.out which basically saves all the information after every
> 0.1ps but I want to generate a file having information at an interval of
> 1ps or 10 ps .is there any way to save every 10th or 100th frame using
> cpptraj?
>
> my trajectories is in NetCDF(.nc) format.
>
> I want to do this because when I load this files in vmd it takes a lot of
> time. so I want short time duration so that I can load my files fastly.
> is there a way to do all this without running any new simulations.
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jul 13 2018 - 11:00:02 PDT
