Re: [AMBER] Cannot run pdb4amber

From: David A Case <david.case.rutgers.edu>
Date: Thu, 12 Jul 2018 08:48:08 -0400

On Thu, Jul 12, 2018, Alen Ahmetovic wrote:

> when I type the command "$AMBERHOME/bin/pdb4amber" the
> following script comes up:
> __________________________________
>
> /Users/alenahmetovic/Research/amber16/bin/pdb4amber source amber.sh

Just to expand on what Hai said: you first need to do this:

cd $AMBERHOME
source amber.sh

Then try the command:

$AMBERHOME/bin/pdb4amber

This should give you a help/usage message. If you still have problems,
please tell us the result of the command "echo $PYTHONPATH".

...good luck....dac


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Received on Thu Jul 12 2018 - 06:00:04 PDT
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