[AMBER] Hydrogen Bond Occupancy

From: Jerrano Bowleg <jlb1692.msstate.edu>
Date: Tue, 22 May 2018 12:13:42 -0500

Dear Amber Users,

I would like to perform a hydrogen bond analysis to identify the hydrogen
bond occupancies for each guanine tetrad in G-quadruplex DNA. I have
already performed MD simulation of 100 ns and I would to get the
occupancies of each tetrad over the last 50 ns of simulation.

Any ideas on how to acquire this information?


Jerrano L. Bowleg
Graduate Student
Dr. Steven Gwaltney Lab
Mississippi State University
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Received on Tue May 22 2018 - 10:30:02 PDT
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