[AMBER] combining trajectories with different parameter files

From: Chetna Tyagi <cheta231.gmail.com>
Date: Mon, 14 May 2018 13:31:36 +0200

Dear all,

I have carried out different simulations of the same peptide with classical
MD and accelerated MD. The parameter files that I used for these were
different.

Similarly, in chloroform solvent, I have used two different parameter files
for some reason.

Is it possible to strip the solvent from parameter files and combine these
trajectories to analyze only the peptide and project it on the same PCA
landscape?

Any advice is appreciated. 

-- 
Thank you,
Chetna
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Received on Mon May 14 2018 - 05:00:02 PDT
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