Re: [AMBER] need QMMM interface for TURBOMOLE

From: Holger Kruse <kruse.ibp.cz>
Date: Wed, 09 May 2018 12:26:25 +0000

Sorry, I found this post late. I have a working basic (no dipole) QM/MM
interface for Turbomole (and Grimme's xtb.)
We used it already here for 2 published projects (one example:
http://pubs.acs.org/doi/abs/10.1021/acs.jctc.7b00598 )
I just found no time to incorporate it cleanly and documented into the
latest Amber (I got git access)
But if there is serious interest, I can push a version in the next 1-2 days
and Andreas Goetz can check it's state.

cheers,
Holger



On Tue, May 8, 2018 at 9:47 PM Scott Brozell <sbrozell.rci.rutgers.edu>
wrote:

> Hi,
>
> I have access to TURBOMOLE.
> Antoine, if you do not have git access then please send your
> work to Andy or me and we shall commit it.
> Then i'll be happy to take a look, test it, etc. to assist
> with moving it forward.
>
> thanks,
> scott
>
> On Tue, May 08, 2018 at 06:19:17PM +0300, Antoine MARION wrote:
> > I did start writing an interface for Turbomole quite a long time ago but
> I did not finish it.
> > I found the qm2_extern_turbo_module.F90 file that I wrote in my
> archives. I based it on your Gaussian interface.
> >
> > Andy, I would be glad to share it with you if you are interested.
> However, I do not have access to Turbomole anymore so finishing and testing
> it would be hard for me, but I could assist to move forward. As far as I
> remember the interface was functional for HF and DFT with quite a few
> options available. I also remember that a few things were wrong, but I
> couldn???t correct them at that moment.
> >
> > > On 7 May 2018, at 20:26, Goetz, Andreas <agoetz.sdsc.edu> wrote:
> > >> On May 7, 2018, at 4:39 AM, David A Case <david.case.rutgers.edu>
> wrote:
> > >> On Thu, May 03, 2018, ????????? wrote:
> > >>
> > >>> I used to major in the QM/MM calculations???and recently I got
> > >>> amber18. And I have seen that you can provide QM interface for the
> > >>> users.So because I used to use TURBOMOLE and charmm for QMMM. Could
> > >>> please offer a interface between amber18 and TURBOMOLE to achieve
> QMMM
> > >>> calculations?
> > >>
> > >> Based on the lack of response, I'm guessing that this is unlikely to
> > >> happen: the subset of Amber developers who have an interest in QM/MM
> > >> mostly likely don't have access to Turbomole. You could consider
> > >> adapting one of the existing interfaces to be compatible.
> > >
> > >
> > > If anybody develops an interface to Turbomole, please let us know and
> we will help incorporating it into the official Amber release. Scott
> Brozell has expressed interest in developing an interface and I may help.
> However, I have very limited time and no dedicated funding for such a
> project, which means that I am not able to make any commitments.
>
>
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>


-- 
Dr. Holger Kruse
Structure and Dynamics of Nucleic Acids
Institute of Biophysics, ASCR
office 133 | +420 541-517- 155 | kruse.ibp.cz
http://www.researcherid.com/rid/D-3615-2009
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Received on Wed May 09 2018 - 05:30:04 PDT
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