[AMBER] Simulation between DNA and small molecules.

From: Edjan Silva <edjan.silva.esenfar.ufal.br>
Date: Thu, 12 Apr 2018 12:35:37 -0300

I would like to perform a moleuclar dynamic simulation between a DNA
fragment and a small molecule. Just to analyze the conformational
variation of the molecule, before the DNA.

Which parameters should I use?
For example:
leaprc.DNA.bsc1 ??
leaprc.water.tip3p ?? ...
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Received on Thu Apr 12 2018 - 09:00:01 PDT