Hi,
It would help a lot if you described in more detail how you loaded the
mdcrd file in VMD.
But since I have encountered this error before, I presume you are following
the instructions from the VMD tutorial in the AMBER website, and you loaded
the mdcrd file as the file type option "AMBER Coordinates" or "AMBER
Coordinates with Periodic Box". This was the right thing to do back when
the file format of trajectory files was still formatted in ASCII. However,
the default file format has since changed to NetCDF (binary). If you scroll
down the input file type options in vmd, you'll see the "NetCDF (AMBER,
MMTK)" option.
Rashid
On Sun, Apr 1, 2018 at 1:16 AM, Vikram Dalal <vikram.dalal.37.gmail.com>
wrote:
> Hello Everyone,
>
> I have generated the .mdcrd file in MD run in AMBER by this command:-
>
>
> -O -i 03_Prod.in -o 03_Prod.out -p 3gzx.prmtop -c 02_Heat.rst -r
> 03_Prod.rst -x 03_Prod.mdcrd -inf 03_Prod.info &
>
> I got an error in VMD during uploading of 03_Prod.mdcrd file.
>
> Error:-
>
> Problem reading CRD file.
>
> What should i do?
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Received on Sat Mar 31 2018 - 11:00:02 PDT
