Dear amber users
I loaded the GTP.prep and frcmod.phos in tleap, but when I load pdb file
these error messages showed. Kindly guide How i can resolve it. Thanks
Unknown residue: GSP number: 395 type: Nonterminal
Creating new UNIT for residue: GSP sequence: 396
Created a new atom named: N9 within residue: .R<GSP 396>
Created a new atom named: C8 within residue: .R<GSP 396>
Created a new atom named: N7 within residue: .R<GSP 396>
Created a new atom named: C5 within residue: .R<GSP 396>
Created a new atom named: C6 within residue: .R<GSP 396>
Created a new atom named: O6 within residue: .R<GSP 396>
Created a new atom named: N1 within residue: .R<GSP 396>
;
;
total atoms in file: 6170
Leap added 6 missing atoms according to residue templates:
6 H / lone pairs
The file contained 44 atoms not in residue templates
regards
khalid
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sat Mar 03 2018 - 03:00:02 PST
