Hi,
You should be able to do this with the ‘time’ or ‘xmin’/‘xstep’ keywords
when specifying an output file, e.g.
rns first out rmsd.dat time 0.001
if you’ve written 1 frame per ps of simulation time. Hope this helps,
-Dan
On Wed, Feb 28, 2018 at 2:28 PM Marcelo Andrade Chagas <
andrade.mchagas.gmail.com> wrote:
> Dear from the AMBER list,
>
> I have a basic question about using cpptraj:
>
> How do I get graphics in which the scale is associated with the
> simulation in ns, instead of number of frames as obtained in the RMSD chart
> shown below?
>
> Best regards
>
>
> [image: Imagem intercalada 1]
> Marcelo Andrade Chagas, MSc
> (PhD student)
> Laboratório de Química Computacional e Modelagem Molecular - LQC-MM
> * http://lqcmm.qui.ufmg.br/
> Departamento de Química da Universidade Federal de Minas Gerais - UFMG
> Tel:(31)3409-5776
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Thu Mar 01 2018 - 04:00:02 PST
