CPPTRAJ: Trajectory Analysis. V14.25
    ___  ___  ___  ___
     | \/ | \/ | \/ | 
    _|_/\_|_/\_|_/\_|_
	Reading 'com_solv.top' as Amber Topology
INPUT: Reading Input from file rmsd.cpptraj
  [trajin prod.mdcrd]
	Reading 'prod.mdcrd' as Amber Trajectory
  [trajin prod1.mdcrd]
	Reading 'prod1.mdcrd' as Amber Trajectory
  [trajin prod2.mdcrd]
	Reading 'prod2.mdcrd' as Amber Trajectory
  [trajin prod3.mdcrd]
	Reading 'prod3.mdcrd' as Amber Trajectory
  [reference heat.rst]
	Reading 'heat.rst' as Amber Restart
	'heat.rst' is an AMBER restart file with velocity info, Parm com_solv.top (Orthogonal box) (reading 1 of 1)
  [rms reference out rmsd_MUT.dat :1-249 @N,CA,C time 10.00]
	Reference mask: [@N,CA,C](738)
    RMSD: (:1-249), reference is reference frame heat.rst (@N,CA,C), with fitting.
---------- RUN BEGIN -------------------------------------------------

PARAMETER FILES:
 0: 'com_solv.top', 36689 atoms, 11129 res, box: Orthogonal, 10884 mol, 10875 solvent, 3000 frames

INPUT TRAJECTORIES:
 0: 'prod.mdcrd' is an AMBER trajectory, Parm com_solv.top (Orthogonal box) (reading 212 of 212)
 1: 'prod1.mdcrd' is an AMBER trajectory, Parm com_solv.top (Orthogonal box) (reading 1749 of 1749)
 2: 'prod2.mdcrd' is an AMBER trajectory, Parm com_solv.top (Orthogonal box) (reading 442 of 442)
 3: 'prod3.mdcrd' is an AMBER trajectory, Parm com_solv.top (Orthogonal box) (reading 597 of 597)
  Coordinate processing will occur on 3000 frames.

REFERENCE FRAMES (1 total):
    0: 'heat.rst', frame 1
	Active reference frame for masks is 0
TIME: Run Initialization took 0.0000 seconds.

BEGIN TRAJECTORY PROCESSING:
.....................................................
ACTION SETUP FOR PARM 'com_solv.top' (1 actions):
  0: [rms reference out rmsd_MUT.dat :1-249 @N,CA,C time 10.00]
	Target mask: [:1-249](4059)
Warning: Number of atoms in target mask (4059) does not equal
Warning:   number of atoms in reference mask (738).
Warning: Setup failed for [rms reference out rmsd_MUT.dat :1-249 @N,CA,C time 10.00]: Skipping
----- prod.mdcrd (1-212, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

----- prod1.mdcrd (1-1749, 1) -----
 0% 10%