Re: [AMBER] command not working

From: David A Case <>
Date: Mon, 29 Jan 2018 08:12:58 -0500

On Mon, Jan 29, 2018, SHALJA VERMA wrote:

> I am using this command to generate protein PDB from the files received
> from H++ but the generated PDB is empty. Please help me how to come out of
> this problem.
> ambpdb -p -c 0.15_80_10_pH6.5_1ODX.crd >
> 0.15_80_10_pH6.5_1ODX.pdb

I'm confused: *.top and *.crd files are created by LEaP, and not by H++. What
is the "file received from H++"?

What is the result of typing "head"? The first
integer should be the number of atoms. Does that look correct?


AMBER mailing list
Received on Mon Jan 29 2018 - 05:30:02 PST
Custom Search