You have to download and install standalone version of ParmED software from
github properly. Parmed is also available in Ambertools by default. I
guess the working 'parmed' you were talking about must be from Ambertools.
To convert topologies and structures from one MD engine format to other MD
engine format, u can try InterMol (
https://github.com/shirtsgroup/InterMol)
software.
----------------------------------------------
P. Kartheek,
PhD Candidate, Computational Biophysical Chemistry,
Center for Computational Natural Sciences and Bioinformatics,
International Institute of Information Technology,
Marimuthu Krishan Group,
9701577399,
kartheek.p.research.iiit.ac.in,
On Fri, Dec 22, 2017 at 12:14 AM, Thakur, Abhishek <axt651.miami.edu> wrote:
> Hi everyone,
>
>
> I am trying to convert amber coordinate into charmm.psf.
>
> I am trying to follow this link
>
>
> https://github.com/ParmEd/ParmEd/issues/631
>
>
> <https://github.com/ParmEd/ParmEd/issues/631>
>
>
> <https://github.com/ParmEd/ParmEd/issues/631>
>
> but as soon as I use the command
>
> import parmed as pmd
>
>
> I am getting an error
>
>
> error import: unable to open X server `localhost:29.0' . error/import.c/
> ImportImageCommand/368.
>
>
> But when I type parmed it works file, can anyone suggest me in this case
> how do I load my prmtop and inpcrd files and convert it to charmm.psf.
>
>
>
> Thanking you,
>
> -Abhishek
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Dec 21 2017 - 11:30:02 PST
