Date: Tue, 12 Dec 2017 23:35:54 +0530
Hello,
I have sourced and even added those lines to the ~/.bashrc file
The problem still persists. Also, I checked the amber.sh file and inspected
the directory $AMBERHOME/lib/python2.78/sitepackages. The screen shot for
the same is attached.
Any help would be appreciated
Thank you
Praneeth
Final year M.sc
IIT BOMBAY
---------- Forwarded message ---------
Date: 12-Dec-2017 11:03 PM
Subject: Re: [AMBER] Error with installation, amber 17 on centos server
To: "AMBER Mailing List" <amber.ambermd.org>, "Hai Nguyen" <
nhai.qn.gmail.com>
Cc: "Praneeth Bommisetti" <iampraneeth11.gmail.com>
On Tue, Dec 12, 2017 at 10:52 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> You should do
>
> source amber.sh
>
> fist
>
> Ps: viewing its content give you better idea.
>
> Good luck
> Hai
>
> On Wed, Dec 13, 2017 at 12:16 AM Praneeth Bommisetti <
> iampraneeth11.gmail.com> wrote:
>
>> Hello Amber users,
>>
>> I am Praneeth from India and I have recently tried to install Amber 17
>> (license) along with the Ambertools17 on a server running on Centos 6.6
>>
>> After configuring using './configure gnu', I gave command 'make install'
>> and I have received the following output, from which I assumed the
>> compilation was successful. I couldn't directly download the miniconda via
>> amber but I have manually uploaded the miniconda directory into the
>> amber16 directory located in the server. And subsequently I have used this
>> python to compile the source code.
>>
>>
>>
>>
>>
>>
>> *Installation of Amber16 (serial) is complete at Tue Dec 12 22:17:30 IST
>> 2017.make[1]: warning: Clock skew detected. Your build may be
>> incomplete.make[1]: Leaving directory
>>
>> `/home/rajaraman/ASMITA/amber16/src'make: warning: Clock skew detected.
>> Your build may be incomplete.*
>>
>>
>> In order to run test calculation, on serial version I have ran the
>> following code located in /trest
>>
>> ./test_amber_serial.sh
>>
>> Which unfortunately give the following result:
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> *Error: Could not import Amber Python modules! Probably your Amber
>> Python environment was not set up correctly.We recommend adding the line:
>>
>> test -f /home/rajaraman/ASMITA/amber16//amber.sh && source
>> /home/rajaraman/ASMITA/amber16//amber.sh (sh/bash/zsh)to your login shell
>> resource file (e.g., ~/.bashrc or ~/.cshrc)*
>>
>>
>> I have already added the above lines to the ~/.bashrc but still the same
>> error shows up.
>> I understand the there was some problem in setting up python environment,
>> therefore I checked the 'PATH' variable in the config.h and the value is
>> 'PYTHON=/home/rajaraman/ASMITA/amber16/bin/amber.python'
>>
>> Kindly let me know, how to debug the error, any help would be appreciated
>>
>> --
>> *Regards, *
>> *Praneeth Bommisetti, *
>> *Final year undergraduate,*
>> *Integrated M.Sc Chemistry, *
>> *Indian Institute of Technology Bombay.*
>> *T: +918424815358, id:praneeth.b.iitb.ac.in <id%3Apraneeth.b.iitb.ac.in>*
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
-- Asmita Sen C/o- Dr. Gopalan Rajaraman Junior Research Fellow (CSIR) Department of Chemistry IIT Bombay, Powai, Mumbai- 400076, India
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