Date: Mon, 11 Dec 2017 16:00:11 +0500
Dear AMber users
I follow the mcpb tutorial of heme metal containing protein. After that ran
the system for minimization and i got the .rst file then i use
ambpdb -p b-h.prmtop -c min.rst > pdbauto.pdb
to observe my system pdb in chimera visualization tool. Then I see That
chimera show only two bond one fe------NO and other fe------NA (porphyrin
nitrogen). It does not show the rest 3 porphyrin bond with FE and one
FE------HIS.
Is there anything wrong. Yes i know the bond information in the prmtop
file. And I can see bond after loading prmtop. But why chimera detect the
only 2 bond.
I also uploaded the image of system.
Kindly guide
Thanks for yours Attentions.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
(image/png attachment: mcbp.png)
