Re: [AMBER] Problem in visualizing Amber16 trajecories in VMD

From: David A Case <>
Date: Wed, 6 Dec 2017 08:08:36 -0500

On Wed, Dec 06, 2017, Biplab Ghosh wrote:
> I am simulation a protein-ligand complex using Amber16 and using vmd-1.9.3
> for visualization of trajectories.

My guess (on limited evidence) is that your trajectory file is in NetCDF
format. It that is the case, you need to choose "netcdf" as the file format
in VMD.

The "Amber coordinates" option is for old-style, ASCII trajectories.

...hope this helps...dac

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Received on Wed Dec 06 2017 - 05:30:03 PST
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