GMAX is on atom 6484, NAME = C, so look at that atom and its neighbors 
for the structure and atom types involved.
Bill
On 11/28/17 3:01 AM, Rana Rehan Khalid wrote:
> Dear All
>
> I want to minimize the structure but when simulation start the values of
> VDWAALS not show. is it due to poor starting structure or structure have
> more clashes. KIndly tell hoe i can remove the clashes through MD
> simulation. Regards
>
> NSTEP       ENERGY          RMS            GMAX         NAME    NUMBER
>        1       3.3484E+18     9.6235E+17     4.9465E+20     C        6484
>
>   BOND    =     5320.4918  ANGLE   =    24456.6551  DIHED      =
> 20708.3171
>   VDWAALS = *************  EEL     =  -645997.9707  HBOND      =
> 0.0000
>   1-4 VDW = *************  1-4 EEL =    56119.7849  RESTRAINT  =
> 0.0000
>
> thanks
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Nov 28 2017 - 03:30:04 PST