What happens if you
/amber16$ echo $LD_LIBRARY_PATH
Bill
On 11/28/17 1:24 AM, MinYuan wrote:
> Hi,
>
> I learned from http://ambermd.org/doc12/Amber16.pdf page24
> to instalmpi version of amber16.
>
>
> When I type command 'make test', error comes
> ----------------------------------------------------------------------------
> /amber16$ make test
> (cd AmberTools/test && make test.parallel)
> make[1]: Entering directory '/home/miny/amber/amber16/AmberTools/test'
> ./test_at_parallel.sh
>
> Tests being run with DO_PARALLEL="mpirun -np 2".
>
> Error: LD_LIBRARY_PATH does not include $AMBERHOME/lib!
>
> Amber now requires $AMBERHOME/lib to be added to your LD_LIBRARY_PATH
> environment variable in order for all components to work.
> We recommend adding the line:
>
> test -f /home/miny/amber/amber16/amber.sh && source /home/miny/amber/amber16/amber.sh (sh/bash/zsh)
> or
> test -f /home/miny/amber/amber16/amber.csh && source /home/miny/amber/amber16/amber.csh (csh/tcsh)
>
> to your login shell resource file (e.g., ~/.bashrc or ~/.cshrc).
> Makefile:11: recipe for target 'test.parallel' failed
> make[1]: *** [test.parallel] Error 1
> make[1]: Leaving directory '/home/miny/amber/amber16/AmberTools/test'
> Makefile:79: recipe for target 'test.parallel' failed
> make: *** [test.parallel] Error 2
> -----------------------------------------------------------------------
>
>
>
> I add the $AMBERHOME/lib into the path, and source ~/.bashrc.
> But it doesn't work and same error occurs.
> ---------------------------------------------------
> # added by amber16
> export AMBERHOME=/home/miny/amber/amber16
> source /home/miny/amber/amber16/amber.sh
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH\:$AMBERHOME/lib:$AMBERHOME/lib4
> ---------------------------------------------------------------------------
>
>
> Looking forward to hear your reply soon.
>
> Best wishes
>
> Yuan Min
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Received on Tue Nov 28 2017 - 03:00:02 PST
