[AMBER] how to set hetrodimer for MD Simulation

From: Rana Rehan Khalid <rrkhalid.umich.edu>
Date: Thu, 23 Nov 2017 02:13:49 +0500

Dear Amber users

My protein system consist of two subunit chains alpha and beta each chain
consist four domains. I predicted the structure of both subunit chains now
i want to combine both structure subunits models, How i can combine them
in one pdb file. so that i can run the simulation on complete structure.
Kindly guide me.

I joined the structure by using pymol and try to ran the simulation but
during minimization my simulation stop with this error

line 6: 2535 Segmentation fault /nfs/amino-library/local/Amber$

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Received on Wed Nov 22 2017 - 13:30:03 PST
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