Re: [AMBER] error of pdb4amber

From: jacky zhao <jackyzhao010.gmail.com>
Date: Tue, 14 Nov 2017 01:14:05 +0800

thank you very much


Lei Zhao

> 在 2017年11月13日,上午8:23,Hai Nguyen <nhai.qn.gmail.com> 写道:
>
> Hi,
>
> Did you create the file by yourself? The first line is empty, delete that
> line will solve the issue.
>
> Hai
>
>> On Sun, Nov 12, 2017 at 4:51 PM, jacky zhao <jackyzhao010.gmail.com> wrote:
>>
>> Thank you for your immediately reply. The PDB file was attached below:
>>
>>
>> 2017-11-13 0:44 GMT+08:00 Hai Nguyen <nhai.qn.gmail.com>:
>>
>>> thanks. Sounds like there is issue with ParmEd in parsing 1HAC.pdb.
>>> Would you mind attaching your pdb file? thanks.
>>>
>>> Hai
>>>
>>> On Sun, Nov 12, 2017 at 11:03 AM, jacky zhao <jackyzhao010.gmail.com>
>>> wrote:
>>>
>>>> Hi,
>>>> I have used amber17 for a long time without any problems. Recently, I
>>> used
>>>> pdb4amber to prepare the pdb file for further simulation. The error
>>> occurs.
>>>> I have attached the error messages below.
>>>>
>>>> Anyone can give me some suggestions.
>>>>
>>>> Thank you for taking your time.
>>>>
>>>> Jacky
>>>>
>>>> [image: 内嵌图片 1]
>>>> --
>>>> Lei Zhao, Ph.D.
>>>> International Joint Cancer Institute of the Second Military Medical
>>>> University
>>>> National Engineering Research Center for Antibody Medicine
>>>> New Library Building 11th floor,800 Xiang Yin Road
>>>> Shanghai 200433
>>>> P.R.China
>>>>
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>>>>
>>>>
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>>
>>
>>
>> --
>> Lei Zhao, Ph.D.
>> International Joint Cancer Institute of the Second Military Medical
>> University
>> National Engineering Research Center for Antibody Medicine
>> New Library Building 11th floor,800 Xiang Yin Road
>> Shanghai 200433
>> P.R.China
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
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Received on Mon Nov 13 2017 - 09:30:02 PST
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