original_pdb 5ujo_ready.pdb
group_name metal
cut_off 2.5
ion_ids 3927
add_bonded_pairs 3927 3930 3927 3931 3927 3932 3927 3933 3927 3935 3927 3939 3927 3940 3927 3941 3927 3942 3927 3943
ion_mol2files RU.mol2
naa_mol2files 8CY.mol2 
frcmod_files 8CY.frcmod
large_opt 1
software_version g09
