Yes,
the command: parmed mc.prmtop
works!
Many thanks,
Michael
________________________________
From: mirzo <mirzo.jinr.ru>
Sent: Friday, October 27, 2017 4:36:29 PM
To: AMBER Mailing List
Subject: Re: [AMBER] parmed.py and xparmed.py problem
Hai Nguyen ΠΙΣΑΜ 27.10.2017 16:06:
> Hi
>
> Exclude .py: parmed
>
>
>
> On Fri, Oct 27, 2017 at 8:59 AM Michael Shokhen
> <michael.shokhen.biu.ac.il>
> wrote:
>
>> Dear Amber experts,
>>
>>
>> I have been trying on my Linux computer with Amber16 to run
>>
>> parmed.py and xparmed.py following
>>
>> the directions on the Jason Swails's ParmEd web page.
>>
>> I have python installed.
>>
>> Unfortunately, system reported:
>>
>> "Command not found."
>>
>> Would you please advise me what is the relevant command
>>
>> to run parmed.py and xparmed.py?
>>
>>
>> Thank you,
>>
>> Michael
>>
>>
>>
>>
>>
>> *****************************
>> Michael Shokhen, PhD
>> Associate Professor
>> Department of Chemistry
>> Bar Ilan University,
>> Ramat Gan, 52900
>> Israel
>> email: shokhen.mail.biu.ac.il<
>> https://webmail.biu.ac.il/owa/redir.aspx?C=a160ef9b9a6b4d06992402715d3ee465&URL=mailto%3ashokhen%40mail.biu.ac.il
>> >
>> _______________________________________________
>> AMBER mailing list
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>> http://lists.ambermd.org/mailman/listinfo/amber
>>
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Received on Fri Oct 27 2017 - 07:00:04 PDT
