Hi,
I think you have mistaken.
For the protein that i am working with, it is more appropriate to follow
ZAFF tutorial.
http://ambermd.org/tutorials/advanced/tutorial20/ZAFF.htm
Except the fact that, its got two metal centre, like i explained in my
previous email, 2 times (Zn-CCCC) of Metal centre type 1. For Eg. pls find
attached the protein model.
The tutorial works fine for one Zn-CCCC metal centre. I am seeking to apply
the same for more than one of same metal centre type.
Any suggestions..?
Best, Parthiban.
> Message: 7
> Date: Sat, 07 Oct 2017 02:59:06 +0000
> From: Amani Eshtiwi <eshtiwia2017.gmail.com>
> Subject: Re: [AMBER] System preparation for protein with Multiple
> Zn-CCCC
> To: AMBER Mailing List <amber.ambermd.org>
> Message-ID:
> <CAGx4e6DCAxBQ3S6Vz4StX7WNE0CQ53WOR5nJJ0xH_fnrOix-ig.mail.
> gmail.com>
> Content-Type: text/plain; charset="UTF-8"
> Hi Parthiban
>
> You can use the MCPB.py tool of AmberTools 16 or 17. I used it for my
> protein which also has two zinc ions though with coordinating residues
> other than cysteine. It is easy to use and you can follow the Amber
> tutorial available here
> http://ambermd.org/tutorials/advanced/tutorial20/mcpbpy.htm
>
> Regards
> Amani
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Received on Sat Oct 07 2017 - 14:00:02 PDT
