Hi
Please use parmed with chamber command
Hai
On Fri, Oct 6, 2017 at 6:02 PM Sundar <jubilantsundar.gmail.com> wrote:
> Dear Amber community,
>
> I am trying to use AMBER's MMPBSA capability. I have a NAMD dcd and would
> like to use it in calculating receptor-ligand binding free energy.
>
> To do that, I installed AmberTools17 and was trying to call in 'chamber'
> program to convert CHARMM topologies to Amber topology files. I am unable
> to call chamber from terminal in my Mac OS. Other tools like pdb4amber etc.
> are there from terminal. Does chamber is not present in $AMBERHOME?
>
> Help me find and run the program successfully. Also let me know if MMPBSA
> reads in dcd files with no issues.
>
> Thanks,
> Jubilant
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Received on Fri Oct 06 2017 - 16:00:03 PDT
