Could you please let me know what exactly I need to do?
I am not expert in this field and it is not a clear message to me.
On Thu, Oct 5, 2017 at 11:20 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> > configure: error: could not find mpi library for --enable-mpi
>
> it's here.
>
> On Thu, Oct 5, 2017 at 5:41 PM, Shirin Jamshidi <shirinjamshidi.gmail.com>
> wrote:
>
> > Dear AMBER experts,
> >
> > Following directions of Amber 16 manual
> >
> > I have successively passed amber 16 serial installation.
> > On the next step: installation of MPI
> > Amber 16 reports error:
> >
> > cd $AMBERHOME
> > ./configure -mpi -cuda -openmp gnu or
> > ./configure -mpi -cuda gnu or
> > ./configure -mpi gnu
> >
> > Configuring fftw-3.3 (may be time-consuming)...
> >
> > Error: FFTW configure returned 1
> > FFTW configure failed! Check the fftw3_config.log file
> > in the $AMBERHOME/AmberTools/src directory.
> > Configure failed due to the errors above!
> > Your advice how to fix the error highly appreciated.
> >
> >
> > Best,
> >
> > Shirin
> >
> >
> >
> >
> > fftw3_config.log file content :
> >
> > checking for a BSD-compatible install... /usr/bin/install -c
> > checking whether build environment is sane... yes
> > checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
> > checking for gawk... gawk
> > checking whether make sets $(MAKE)... yes
> > checking whether to enable maintainer-specific portions of Makefiles...
> no
> > checking build system type... x86_64-unknown-linux-gnu
> > checking host system type... x86_64-unknown-linux-gnu
> > checking for gcc... gcc
> > checking whether the C compiler works... yes
> > checking for C compiler default output file name... a.out
> > checking for suffix of executables...
> > checking whether we are cross compiling... no
> > checking for suffix of object files... o
> > checking whether we are using the GNU C compiler... yes
> > checking whether gcc accepts -g... yes
> > checking for gcc option to accept ISO C89... none needed
> > checking for style of include used by make... GNU
> > checking dependency style of gcc... gcc3
> > checking whether gcc and cc understand -c and -o together... yes
> > checking for C compiler vendor... gnu
> > checking for gcc option to accept ISO C99... -std=gnu99
> > checking for gcc -std=gnu99 option to accept ISO Standard C... (cached)
> > -std=gnu99
> > checking whether ln -s works... yes
> > checking whether make sets $(MAKE)... (cached) yes
> > checking for a sed that does not truncate output... /usr/bin/sed
> > checking for grep that handles long lines and -e... /usr/bin/grep
> > checking for egrep... /usr/bin/grep -E
> > checking for fgrep... /usr/bin/grep -F
> > checking for ld used by gcc -std=gnu99... /usr/bin/ld
> > checking if the linker (/usr/bin/ld) is GNU ld... yes
> > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
> > checking the name lister (/usr/bin/nm -B) interface... BSD nm
> > checking the maximum length of command line arguments... 1572864
> > checking whether the shell understands some XSI constructs... yes
> > checking whether the shell understands "+="... yes
> > checking for /usr/bin/ld option to reload object files... -r
> > checking for objdump... objdump
> > checking how to recognize dependent libraries... pass_all
> > checking for ar... ar
> > checking for strip... strip
> > checking for ranlib... ranlib
> > checking command to parse /usr/bin/nm -B output from gcc -std=gnu99
> > object... ok
> > checking how to run the C preprocessor... gcc -std=gnu99 -E
> > checking for ANSI C header files... yes
> > checking for sys/types.h... yes
> > checking for sys/stat.h... yes
> > checking for stdlib.h... yes
> > checking for string.h... yes
> > checking for memory.h... yes
> > checking for strings.h... yes
> > checking for inttypes.h... yes
> > checking for stdint.h... yes
> > checking for unistd.h... yes
> > checking for dlfcn.h... yes
> > checking for objdir... .libs
> > checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
> > checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
> > checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
> > checking if gcc -std=gnu99 static flag -static works... no
> > checking if gcc -std=gnu99 supports -c -o file.o... yes
> > checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
> > checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64)
> > supports shared libraries... yes
> > checking whether -lc should be explicitly linked in... no
> > checking dynamic linker characteristics... GNU/Linux ld.so
> > checking how to hardcode library paths into programs... immediate
> > checking whether stripping libraries is possible... yes
> > checking if libtool supports shared libraries... yes
> > checking whether to build shared libraries... yes
> > checking whether to build static libraries... yes
> > checking for ocamlbuild... no
> > checking for mpicc... no
> > checking for hcc... no
> > checking for mpcc... no
> > checking for mpcc_r... no
> > checking for mpxlc... no
> > checking for cmpicc... no
> > checking for MPI_Init... no
> > checking for MPI_Init in -lmpi... no
> > checking for MPI_Init in -lmpich... no
> > configure: error: could not find mpi library for --enable-mpi
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> >
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Received on Thu Oct 05 2017 - 15:30:04 PDT
