This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by MPICH configure 3.2, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/Applications/Amber17/amber16 --enable-f77 --enable-fc --enable-cxx --enable-shared --enable-sharedlibs=osx-gcc LDFLAGS=-L/usr/X11/lib F77=gfortran FFLAGS=-O0 -fPIC FC=gfortran FCFLAGS=-O0 -fPIC CC=gcc CFLAGS=-fPIC CXX=g++ ## --------- ## ## Platform. ## ## --------- ## hostname = Hoffman.local uname -m = x86_64 uname -r = 16.7.0 uname -s = Darwin uname -v = Darwin Kernel Version 16.7.0: Thu Jun 15 17:36:27 PDT 2017; root:xnu-3789.70.16~2/RELEASE_X86_64 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 16.7.0: Thu Jun 15 17:36:27 PDT 2017; root:xnu-3789.70.16~2/RELEASE_X86_64 Kernel configured for up to 24 processors. 12 processors are physically available. 24 processors are logically available. Processor type: i486 (Intel 80486) Processors active: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 Primary memory available: 16.00 gigabytes Default processor set: 260 tasks, 1107 threads, 24 processors Load average: 2.47, Mach factor: 21.52 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /Applications/Amber17/amber16/bin PATH: /opt/local/bin PATH: /opt/local/sbin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin PATH: /opt/X11/bin PATH: /Applications/Gaussian/g09/bsd PATH: /Applications/Gaussian/g09/local PATH: /Applications/Gaussian/g09/extras PATH: /Applications/Gaussian/g09 PATH: /Applications/Amber17/amber16/bin PATH: /Applications/taopackage/scripts ## ----------- ## ## Core tests. ## ## ----------- ## configure:5257: checking for C compiler version configure:5266: gcc --version >&5 gcc (MacPorts gcc5 5.4.0_2) 5.4.0 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5277: $? = 0 configure:5266: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin16/5.4.0/lto-wrapper Target: x86_64-apple-darwin16 Configured with: /opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_lang_gcc5/gcc5/work/gcc-5.4.0/configure --prefix=/opt/local --build=x86_64-apple-darwin16 --enable-languages=c,c++,objc,obj-c++,lto,fortran,java --libdir=/opt/local/lib/gcc5 --includedir=/opt/local/include/gcc5 --infodir=/opt/local/share/info --mandir=/opt/local/share/man --datarootdir=/opt/local/share/gcc-5 --with-local-prefix=/opt/local --with-system-zlib --disable-nls --program-suffix=-mp-5 --with-gxx-include-dir=/opt/local/include/gcc5/c++/ --with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local --with-isl=/opt/local --enable-stage1-checking --disable-multilib --enable-lto --enable-libstdcxx-time --with-build-config=bootstrap-debug --with-as=/opt/local/bin/as --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar --with-bugurl=https://trac.macports.org/newticket --disable-tls --with-pkgversion='MacPorts gcc5 5.4.0_2' Thread model: posix gcc version 5.4.0 (MacPorts gcc5 5.4.0_2) configure:5277: $? = 0 configure:5266: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:5277: $? = 1 configure:5266: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:5277: $? = 1 configure:5297: checking whether the C compiler works configure:5319: gcc -fPIC -L/usr/X11/lib conftest.c >&5 configure:5323: $? = 0 configure:5371: result: yes configure:5374: checking for C compiler default output file name configure:5376: result: a.out configure:5382: checking for suffix of executables configure:5389: gcc -o conftest -fPIC -L/usr/X11/lib conftest.c >&5 configure:5393: $? = 0 configure:5415: result: configure:5437: checking whether we are cross compiling configure:5445: gcc -o conftest -fPIC -L/usr/X11/lib conftest.c >&5 configure:5449: $? = 0 configure:5456: ./conftest configure:5460: $? = 0 configure:5475: result: no configure:5480: checking for suffix of object files configure:5502: gcc -c -fPIC conftest.c >&5 configure:5506: $? = 0 configure:5527: result: o configure:5531: checking whether we are using the GNU C compiler configure:5550: gcc -c -fPIC conftest.c >&5 configure:5550: $? = 0 configure:5559: result: yes configure:5568: checking whether gcc accepts -g configure:5588: gcc -c -g conftest.c >&5 configure:5588: $? = 0 configure:5629: result: yes configure:5646: checking for gcc option to accept ISO C89 configure:5709: gcc -c -fPIC conftest.c >&5 configure:5709: $? = 0 configure:5722: result: none needed configure:5747: checking whether gcc understands -c and -o together configure:5769: gcc -c conftest.c -o conftest2.o configure:5772: $? = 0 configure:5769: gcc -c conftest.c -o conftest2.o configure:5772: $? = 0 configure:5784: result: yes configure:5819: checking how to run the C preprocessor configure:5850: gcc -E conftest.c configure:5850: $? = 0 configure:5864: gcc -E conftest.c conftest.c:9:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:5864: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | /* end confdefs.h. */ | #include configure:5889: result: gcc -E configure:5909: gcc -E conftest.c configure:5909: $? = 0 configure:5923: gcc -E conftest.c conftest.c:9:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:5923: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | /* end confdefs.h. */ | #include configure:5983: checking for a BSD-compatible install configure:6051: result: /usr/bin/install -c configure:6062: checking whether build environment is sane configure:6117: result: yes configure:6265: checking for a thread-safe mkdir -p configure:6304: result: confdb/install-sh -c -d configure:6311: checking for gawk configure:6341: result: no configure:6311: checking for mawk configure:6341: result: no configure:6311: checking for nawk configure:6341: result: no configure:6311: checking for awk configure:6327: found /usr/bin/awk configure:6338: result: awk configure:6349: checking whether make sets $(MAKE) configure:6371: result: yes configure:6401: checking for style of include used by make configure:6429: result: GNU configure:6463: checking whether make supports nested variables configure:6480: result: yes configure:6565: checking dependency style of gcc configure:6676: result: gcc3 configure:6735: checking whether to enable maintainer-specific portions of Makefiles configure:6744: result: yes configure:6808: checking for ar configure:6824: found /opt/local/bin/ar configure:6835: result: ar configure:6861: checking the archiver (ar) interface configure:6877: gcc -c -fPIC conftest.c >&5 configure:6877: $? = 0 configure:6879: ar cru libconftest.a conftest.o >&5 configure:6882: $? = 0 configure:6910: result: ar configure:6960: checking build system type configure:6974: result: x86_64-apple-darwin16.7.0 configure:6994: checking host system type configure:7007: result: x86_64-apple-darwin16.7.0 configure:7048: checking how to print strings configure:7075: result: printf configure:7096: checking for a sed that does not truncate output configure:7160: result: /usr/bin/sed configure:7178: checking for grep that handles long lines and -e configure:7236: result: /usr/bin/grep configure:7241: checking for egrep configure:7303: result: /usr/bin/grep -E configure:7308: checking for fgrep configure:7370: result: /usr/bin/grep -F configure:7405: checking for ld used by gcc configure:7472: result: /opt/local/bin/ld configure:7479: checking if the linker (/opt/local/bin/ld) is GNU ld configure:7494: result: no configure:7506: checking for BSD- or MS-compatible name lister (nm) configure:7560: result: /opt/local/bin/nm -B configure:7690: checking the name lister (/opt/local/bin/nm -B) interface configure:7697: gcc -c -fPIC conftest.c >&5 configure:7700: /opt/local/bin/nm -B "conftest.o" configure:7703: output 0000000000000000 S _some_variable configure:7710: result: BSD nm configure:7713: checking whether ln -s works configure:7717: result: yes configure:7725: checking the maximum length of command line arguments configure:7856: result: 196608 configure:7904: checking how to convert x86_64-apple-darwin16.7.0 file names to x86_64-apple-darwin16.7.0 format configure:7944: result: func_convert_file_noop configure:7951: checking how to convert x86_64-apple-darwin16.7.0 file names to toolchain format configure:7971: result: func_convert_file_noop configure:7978: checking for /opt/local/bin/ld option to reload object files configure:7985: result: -r configure:8059: checking for objdump configure:8075: found /usr/bin/objdump configure:8086: result: objdump configure:8118: checking how to recognize dependent libraries configure:8318: result: pass_all configure:8403: checking for dlltool configure:8433: result: no configure:8463: checking how to associate runtime and link libraries configure:8490: result: printf %s\n configure:8614: checking for archiver @FILE support configure:8631: gcc -c -fPIC conftest.c >&5 configure:8631: $? = 0 configure:8634: ar cru libconftest.a @conftest.lst >&5 ar: @conftest.lst: No such file or directory configure:8637: $? = 1 configure:8657: result: no configure:8715: checking for strip configure:8731: found /opt/local/bin/strip configure:8742: result: strip configure:8814: checking for ranlib configure:8830: found /opt/local/bin/ranlib configure:8841: result: ranlib configure:8943: checking command to parse /opt/local/bin/nm -B output from gcc object configure:9096: gcc -c -fPIC conftest.c >&5 configure:9099: $? = 0 configure:9103: /opt/local/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:9106: $? = 0 cannot find nm_test_var in conftest.nm configure:9096: gcc -c -fPIC conftest.c >&5 configure:9099: $? = 0 configure:9103: /opt/local/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:9106: $? = 0 configure:9172: gcc -o conftest -fPIC -L/usr/X11/lib conftest.c conftstm.o >&5 configure:9175: $? = 0 configure:9213: result: ok configure:9260: checking for sysroot configure:9290: result: no configure:9297: checking for a working dd configure:9335: result: /bin/dd configure:9339: checking how to truncate binary pipes configure:9354: result: /bin/dd bs=4096 count=1 configure:9683: checking for mt configure:9713: result: no configure:9733: checking if : is a manifest tool configure:9739: : '-?' configure:9747: result: no configure:9803: checking for dsymutil configure:9819: found /usr/bin/dsymutil configure:9830: result: dsymutil configure:9895: checking for nmedit configure:9911: found /opt/local/bin/nmedit configure:9922: result: nmedit configure:9987: checking for lipo configure:10003: found /opt/local/bin/lipo configure:10014: result: lipo configure:10079: checking for otool configure:10095: found /opt/local/bin/otool configure:10106: result: otool configure:10171: checking for otool64 configure:10201: result: no configure:10246: checking for -single_module linker flag gcc -fPIC -L/usr/X11/lib -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c configure:10279: result: yes configure:10282: checking for -exported_symbols_list linker flag configure:10302: gcc -o conftest -fPIC -L/usr/X11/lib -Wl,-exported_symbols_list,conftest.sym conftest.c >&5 configure:10302: $? = 0 configure:10312: result: yes configure:10315: checking for -force_load linker flag gcc -fPIC -c -o conftest.o conftest.c ar cru libconftest.a conftest.o ranlib libconftest.a gcc -fPIC -L/usr/X11/lib -o conftest conftest.c -Wl,-force_load,./libconftest.a configure:10347: result: yes configure:10420: checking for ANSI C header files configure:10440: gcc -c -fPIC conftest.c >&5 configure:10440: $? = 0 configure:10513: gcc -o conftest -fPIC -L/usr/X11/lib conftest.c >&5 configure:10513: $? = 0 configure:10513: ./conftest configure:10513: $? = 0 configure:10524: result: yes configure:10537: checking for sys/types.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10537: checking for sys/stat.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10537: checking for stdlib.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10537: checking for string.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10537: checking for memory.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10537: checking for strings.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10537: checking for inttypes.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10537: checking for stdint.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10537: checking for unistd.h configure:10537: gcc -c -fPIC conftest.c >&5 configure:10537: $? = 0 configure:10537: result: yes configure:10551: checking for dlfcn.h configure:10551: gcc -c -fPIC conftest.c >&5 configure:10551: $? = 0 configure:10551: result: yes configure:10807: checking for objdir configure:10822: result: .libs configure:11086: checking if gcc supports -fno-rtti -fno-exceptions configure:11104: gcc -c -fPIC -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:11108: $? = 0 configure:11121: result: no configure:11479: checking for gcc option to produce PIC configure:11486: result: -fno-common -DPIC configure:11494: checking if gcc PIC flag -fno-common -DPIC works configure:11512: gcc -c -fPIC -fno-common -DPIC -DPIC conftest.c >&5 configure:11516: $? = 0 configure:11529: result: yes configure:11558: checking if gcc static flag -static works configure:11586: result: no configure:11601: checking if gcc supports -c -o file.o configure:11622: gcc -c -fPIC -o out/conftest2.o conftest.c >&5 configure:11626: $? = 0 configure:11648: result: yes configure:11656: checking if gcc supports -c -o file.o configure:11703: result: yes configure:11736: checking whether the gcc linker (/opt/local/bin/ld) supports shared libraries configure:12998: result: yes configure:13238: checking dynamic linker characteristics configure:14056: result: darwin16.7.0 dyld configure:14178: checking how to hardcode library paths into programs configure:14203: result: immediate configure:14751: checking whether stripping libraries is possible configure:14765: result: yes configure:14791: checking if libtool supports shared libraries configure:14793: result: yes configure:14796: checking whether to build shared libraries configure:14821: result: yes configure:14824: checking whether to build static libraries configure:14828: result: yes configure:14877: checking whether make supports nested variables configure:14894: result: yes configure:15051: checking for C++ compiler version configure:15060: g++ --version >&5 g++ (MacPorts gcc5 5.4.0_2) 5.4.0 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:15071: $? = 0 configure:15060: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin16/5.4.0/lto-wrapper Target: x86_64-apple-darwin16 Configured with: /opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_lang_gcc5/gcc5/work/gcc-5.4.0/configure --prefix=/opt/local --build=x86_64-apple-darwin16 --enable-languages=c,c++,objc,obj-c++,lto,fortran,java --libdir=/opt/local/lib/gcc5 --includedir=/opt/local/include/gcc5 --infodir=/opt/local/share/info --mandir=/opt/local/share/man --datarootdir=/opt/local/share/gcc-5 --with-local-prefix=/opt/local --with-system-zlib --disable-nls --program-suffix=-mp-5 --with-gxx-include-dir=/opt/local/include/gcc5/c++/ --with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local --with-isl=/opt/local --enable-stage1-checking --disable-multilib --enable-lto --enable-libstdcxx-time --with-build-config=bootstrap-debug --with-as=/opt/local/bin/as --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar --with-bugurl=https://trac.macports.org/newticket --disable-tls --with-pkgversion='MacPorts gcc5 5.4.0_2' Thread model: posix gcc version 5.4.0 (MacPorts gcc5 5.4.0_2) configure:15071: $? = 0 configure:15060: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:15071: $? = 1 configure:15060: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion' g++: fatal error: no input files compilation terminated. configure:15071: $? = 1 configure:15075: checking whether we are using the GNU C++ compiler configure:15094: g++ -c conftest.cpp >&5 configure:15094: $? = 0 configure:15103: result: yes configure:15112: checking whether g++ accepts -g configure:15132: g++ -c -g conftest.cpp >&5 configure:15132: $? = 0 configure:15173: result: yes configure:15198: checking dependency style of g++ configure:15309: result: gcc3 configure:15342: checking how to run the C++ preprocessor configure:15369: g++ -E conftest.cpp configure:15369: $? = 0 configure:15383: g++ -E conftest.cpp conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:15383: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15408: result: g++ -E configure:15428: g++ -E conftest.cpp configure:15428: $? = 0 configure:15442: g++ -E conftest.cpp conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:15442: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:15604: checking for ld used by g++ configure:15671: result: /opt/local/bin/ld configure:15678: checking if the linker (/opt/local/bin/ld) is GNU ld configure:15693: result: no configure:15748: checking whether the g++ linker (/opt/local/bin/ld) supports shared libraries configure:16824: result: yes configure:16860: g++ -c conftest.cpp >&5 configure:16863: $? = 0 configure:17344: checking for g++ option to produce PIC configure:17351: result: -fno-common -DPIC configure:17359: checking if g++ PIC flag -fno-common -DPIC works configure:17377: g++ -c -fno-common -DPIC -DPIC conftest.cpp >&5 configure:17381: $? = 0 configure:17394: result: yes configure:17417: checking if g++ static flag -static works configure:17445: result: no configure:17457: checking if g++ supports -c -o file.o configure:17478: g++ -c -o out/conftest2.o conftest.cpp >&5 configure:17482: $? = 0 configure:17504: result: yes configure:17509: checking if g++ supports -c -o file.o configure:17556: result: yes configure:17586: checking whether the g++ linker (/opt/local/bin/ld) supports shared libraries configure:17626: result: yes configure:17767: checking dynamic linker characteristics configure:18512: result: darwin16.7.0 dyld configure:18577: checking how to hardcode library paths into programs configure:18602: result: immediate configure:18751: checking for Fortran compiler version configure:18760: gfortran --version >&5 GNU Fortran (MacPorts gcc5 5.4.0_2) 5.4.0 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:18771: $? = 0 configure:18760: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin16/5.4.0/lto-wrapper Target: x86_64-apple-darwin16 Configured with: /opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_lang_gcc5/gcc5/work/gcc-5.4.0/configure --prefix=/opt/local --build=x86_64-apple-darwin16 --enable-languages=c,c++,objc,obj-c++,lto,fortran,java --libdir=/opt/local/lib/gcc5 --includedir=/opt/local/include/gcc5 --infodir=/opt/local/share/info --mandir=/opt/local/share/man --datarootdir=/opt/local/share/gcc-5 --with-local-prefix=/opt/local --with-system-zlib --disable-nls --program-suffix=-mp-5 --with-gxx-include-dir=/opt/local/include/gcc5/c++/ --with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local --with-isl=/opt/local --enable-stage1-checking --disable-multilib --enable-lto --enable-libstdcxx-time --with-build-config=bootstrap-debug --with-as=/opt/local/bin/as --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar --with-bugurl=https://trac.macports.org/newticket --disable-tls --with-pkgversion='MacPorts gcc5 5.4.0_2' Thread model: posix gcc version 5.4.0 (MacPorts gcc5 5.4.0_2) configure:18771: $? = 0 configure:18760: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:18771: $? = 1 configure:18760: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion' gfortran: fatal error: no input files compilation terminated. configure:18771: $? = 1 configure:18780: checking whether we are using the GNU Fortran compiler configure:18793: gfortran -c -O0 -fPIC conftest.F >&5 configure:18793: $? = 0 configure:18802: result: yes configure:18808: checking whether gfortran accepts -g configure:18819: gfortran -c -g conftest.f >&5 configure:18819: $? = 0 configure:18827: result: yes configure:18959: checking if libtool supports shared libraries configure:18961: result: yes configure:18964: checking whether to build shared libraries configure:18988: result: yes configure:18991: checking whether to build static libraries configure:18995: result: yes configure:19029: gfortran -c -O0 -fPIC conftest.f >&5 configure:19032: $? = 0 configure:19492: checking for gfortran option to produce PIC configure:19499: result: -fno-common configure:19507: checking if gfortran PIC flag -fno-common works configure:19525: gfortran -c -O0 -fPIC -fno-common conftest.f >&5 configure:19529: $? = 0 configure:19542: result: yes configure:19565: checking if gfortran static flag -static works configure:19593: result: no configure:19605: checking if gfortran supports -c -o file.o configure:19626: gfortran -c -O0 -fPIC -o out/conftest2.o conftest.f >&5 configure:19630: $? = 0 configure:19652: result: yes configure:19657: checking if gfortran supports -c -o file.o configure:19704: result: yes configure:19734: checking whether the gfortran linker (/opt/local/bin/ld) supports shared libraries configure:20946: result: yes configure:21087: checking dynamic linker characteristics configure:21826: result: darwin16.7.0 dyld configure:21891: checking how to hardcode library paths into programs configure:21916: result: immediate configure:22111: checking for Fortran 77 compiler version configure:22120: gfortran --version >&5 GNU Fortran (MacPorts gcc5 5.4.0_2) 5.4.0 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:22131: $? = 0 configure:22120: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin16/5.4.0/lto-wrapper Target: x86_64-apple-darwin16 Configured with: /opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_lang_gcc5/gcc5/work/gcc-5.4.0/configure --prefix=/opt/local --build=x86_64-apple-darwin16 --enable-languages=c,c++,objc,obj-c++,lto,fortran,java --libdir=/opt/local/lib/gcc5 --includedir=/opt/local/include/gcc5 --infodir=/opt/local/share/info --mandir=/opt/local/share/man --datarootdir=/opt/local/share/gcc-5 --with-local-prefix=/opt/local --with-system-zlib --disable-nls --program-suffix=-mp-5 --with-gxx-include-dir=/opt/local/include/gcc5/c++/ --with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local --with-isl=/opt/local --enable-stage1-checking --disable-multilib --enable-lto --enable-libstdcxx-time --with-build-config=bootstrap-debug --with-as=/opt/local/bin/as --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar --with-bugurl=https://trac.macports.org/newticket --disable-tls --with-pkgversion='MacPorts gcc5 5.4.0_2' Thread model: posix gcc version 5.4.0 (MacPorts gcc5 5.4.0_2) configure:22131: $? = 0 configure:22120: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:22131: $? = 1 configure:22120: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion' gfortran: fatal error: no input files compilation terminated. configure:22131: $? = 1 configure:22140: checking whether we are using the GNU Fortran 77 compiler configure:22153: gfortran -c -O0 -fPIC conftest.F >&5 configure:22153: $? = 0 configure:22162: result: yes configure:22168: checking whether gfortran accepts -g configure:22179: gfortran -c -g conftest.f >&5 configure:22179: $? = 0 configure:22187: result: yes configure:22316: checking if libtool supports shared libraries configure:22318: result: yes configure:22321: checking whether to build shared libraries configure:22345: result: yes configure:22348: checking whether to build static libraries configure:22352: result: yes configure:22704: checking for gfortran option to produce PIC configure:22711: result: -fno-common configure:22719: checking if gfortran PIC flag -fno-common works configure:22737: gfortran -c -O0 -fPIC -fno-common conftest.f >&5 configure:22741: $? = 0 configure:22754: result: yes configure:22777: checking if gfortran static flag -static works configure:22805: result: no configure:22817: checking if gfortran supports -c -o file.o configure:22838: gfortran -c -O0 -fPIC -o out/conftest2.o conftest.f >&5 configure:22842: $? = 0 configure:22864: result: yes configure:22869: checking if gfortran supports -c -o file.o configure:22916: result: yes configure:22946: checking whether the gfortran linker (/opt/local/bin/ld) supports shared libraries configure:24158: result: yes configure:24299: checking dynamic linker characteristics configure:25038: result: darwin16.7.0 dyld configure:25103: checking how to hardcode library paths into programs configure:25128: result: immediate configure:26268: checking hcoll/api/hcoll_api.h usability configure:26268: gcc -c -fPIC conftest.c >&5 conftest.c:56:33: fatal error: hcoll/api/hcoll_api.h: No such file or directory compilation terminated. configure:26268: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:26268: result: no configure:26268: checking hcoll/api/hcoll_api.h presence configure:26268: gcc -E conftest.c conftest.c:23:33: fatal error: hcoll/api/hcoll_api.h: No such file or directory compilation terminated. configure:26268: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:26268: result: no configure:26268: checking for hcoll/api/hcoll_api.h configure:26268: result: no configure:26276: checking for hcoll_init in -lhcoll configure:26301: gcc -o conftest -fPIC -L/usr/X11/lib conftest.c -lhcoll >&5 ld: library not found for -lhcoll collect2: error: ld returned 1 exit status configure:26301: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char hcoll_init (); | int | main () | { | return hcoll_init (); | ; | return 0; | } configure:26310: result: no configure:26706: RUNNING PREREQ FOR ch3:nemesis configure:27238: ===== configuring src/mpl ===== configure:27403: running /bin/sh ./configure --disable-option-checking '--prefix=/Applications/Amber17/amber16' --disable-versioning '--enable-f77' '--enable-fc' '--enable-cxx' '--enable-shared' '--enable-sharedlibs=osx-gcc' 'LDFLAGS=-L/usr/X11/lib' 'F77=gfortran' 'FFLAGS=-O0 -fPIC ' 'FC=gfortran' 'FCFLAGS=-O0 -fPIC ' 'CC=gcc' 'CFLAGS=-fPIC ' 'CXX=g++' --cache-file=/dev/null --srcdir=. configure:27423: ===== done with src/mpl configure ===== configure:27429: sourcing src/mpl/localdefs CPPFLAGS(=' ') does not contain '-I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include', appending CPPFLAGS(=' -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include') does not contain '-I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include', appending LIBS(='') does not contain '-lopa', prepending configure:27546: gcc -o conftest -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -L/usr/X11/lib conftest.c -lopa >&5 conftest.c:26:28: fatal error: opa_primitives.h: No such file or directory compilation terminated. configure:27546: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | /* end confdefs.h. */ | #include "opa_primitives.h" | | int | main () | { | | OPA_int_t i; | OPA_store_int(i,10); | OPA_fetch_and_incr_int(&i,5); | | ; | return 0; | } CPPFLAGS(=' -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include') does not contain '-I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src', appending CPPFLAGS(=' -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src') does not contain '-I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src', appending opa_subdir_args(='--disable-versioning') does not contain '--with-atomic-primitives=auto_allow_emulation', appending configure:27620: ===== configuring src/openpa ===== configure:27785: running /bin/sh ./configure --disable-option-checking '--prefix=/Applications/Amber17/amber16' --disable-versioning --with-atomic-primitives=auto_allow_emulation '--enable-f77' '--enable-fc' '--enable-cxx' '--enable-shared' '--enable-sharedlibs=osx-gcc' 'LDFLAGS=-L/usr/X11/lib' 'F77=gfortran' 'FFLAGS=-O0 -fPIC ' 'FC=gfortran' 'FCFLAGS=-O0 -fPIC ' 'CC=gcc' 'CFLAGS=-fPIC ' 'CXX=g++' --cache-file=/dev/null --srcdir=. configure:27805: ===== done with src/openpa configure ===== CPPFLAGS(=' -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src') does not contain '-D_REENTRANT', appending CPPFLAGS(=' -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT') does not contain '-I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include', appending configure:28540: checking whether the compiler defines __func__ configure:28567: gcc -o conftest -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:28567: $? = 0 configure:28567: ./conftest configure:28567: $? = 0 configure:28604: result: yes configure:28613: checking whether the compiler defines __FUNC__ configure:28640: gcc -o conftest -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 conftest.c: In function 'foo': conftest.c:39:20: error: '__FUNC__' undeclared (first use in this function) return (strcmp(__FUNC__, "foo") == 0); ^ conftest.c:39:20: note: each undeclared identifier is reported only once for each function it appears in configure:28640: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | /* end confdefs.h. */ | | | #include | int foo(void); | int foo(void) | { | return (strcmp(__FUNC__, "foo") == 0); | } | int main(int argc, char ** argv) | { | return (foo() ? 0 : 1); | } | | configure:28677: result: no configure:28686: checking whether the compiler sets __FUNCTION__ configure:28713: gcc -o conftest -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:28713: $? = 0 configure:28713: ./conftest configure:28713: $? = 0 configure:28750: result: yes configure:28765: checking whether C compiler accepts option -O2 configure:28820: gcc -o conftest -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c > pac_test1.log 2>&1 configure:28820: $? = 0 configure:28851: gcc -o conftest -O2 -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c > pac_test2.log 2>&1 configure:28851: $? = 0 configure:28859: diff -b pac_test1.log pac_test2.log > pac_test.log configure:28862: $? = 0 configure:28962: result: yes configure:28978: checking whether C compiler option -O2 works with an invalid prototype program configure:28986: gcc -o conftest -O2 -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:28986: $? = 0 configure:28993: result: yes configure:28998: checking whether routines compiled with -O2 can be linked with ones compiled without -O2 configure:29038: gcc -c -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c > pac_test3.log 2>&1 configure:29038: $? = 0 configure:29042: mv conftest.o pac_conftest.o configure:29045: $? = 0 configure:29088: gcc -o conftest -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c pac_conftest.o > pac_test4.log 2>&1 configure:29088: $? = 0 configure:29130: gcc -o conftest -O2 -fPIC -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c pac_conftest.o > pac_test5.log 2>&1 configure:29130: $? = 0 configure:29138: diff -b pac_test4.log pac_test5.log > pac_test.log configure:29141: $? = 0 configure:29280: result: yes configure:29313: checking for type of weak symbol alias support configure:29337: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 conftest.c:45:1: warning: alias definitions not supported in Mach-O; ignored } ^ Undefined symbols for architecture x86_64: "_PFoo", referenced from: _main in cczHZNhm.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:29337: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | /* end confdefs.h. */ | | extern int PFoo(int); | #pragma weak PFoo = Foo | int Foo(int a) { return a; } | | int | main () | { | return PFoo(1); | ; | return 0; | } configure:29584: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 Undefined symbols for architecture x86_64: "_PFoo", referenced from: _main in cc0YteXR.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:29584: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | /* end confdefs.h. */ | | extern int PFoo(int); | #pragma _HP_SECONDARY_DEF Foo PFoo | int Foo(int a) { return a; } | | int | main () | { | return PFoo(1); | ; | return 0; | } configure:29606: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 Undefined symbols for architecture x86_64: "_PFoo", referenced from: _main in ccvjVEej.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:29606: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | /* end confdefs.h. */ | | extern int PFoo(int); | #pragma _CRI duplicate PFoo as Foo | int Foo(int a) { return a; } | | int | main () | { | return PFoo(1); | ; | return 0; | } configure:29620: result: no configure:29638: checking whether __attribute__ ((weak)) allowed configure:29655: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:29655: $? = 0 configure:29662: result: yes configure:29666: checking whether __attribute__ ((weak_import)) allowed configure:29683: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:29683: $? = 0 configure:29690: result: yes configure:29693: checking whether __attribute__((weak,alias(...))) allowed configure:29719: gcc -c -Werror -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c:41:1: error: alias definitions not supported in Mach-O; ignored [-Werror] } ^ cc1: all warnings being treated as errors configure:29719: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | /* end confdefs.h. */ | int __foo(int a){return 0;} int foo(int) __attribute__((weak,alias("__foo"))); | int | main () | { | int a; | ; | return 0; | } configure:29732: result: no configure:29914: checking for shared library (esp. rpath) characteristics of CC configure:30005: result: done (results in src/env/cc_shlib.conf) configure:30125: checking whether Fortran 77 compiler accepts option -O2 configure:30170: gfortran -o conftest -O0 -fPIC -L/usr/X11/lib conftest.f > pac_test1.log 2>&1 configure:30170: $? = 0 configure:30201: gfortran -o conftest -O2 -O0 -fPIC -L/usr/X11/lib conftest.f > pac_test2.log 2>&1 configure:30201: $? = 0 configure:30209: diff -b pac_test1.log pac_test2.log > pac_test.log configure:30212: $? = 0 configure:30312: result: yes configure:30317: checking whether routines compiled with -O2 can be linked with ones compiled without -O2 configure:30356: gfortran -c -O0 -fPIC conftest.f > pac_test3.log 2>&1 configure:30356: $? = 0 configure:30360: mv conftest.o pac_conftest.o configure:30363: $? = 0 configure:30401: gfortran -o conftest -O2 -O0 -fPIC -L/usr/X11/lib conftest.f pac_conftest.o > pac_test4.log 2>&1 configure:30401: $? = 0 configure:30409: diff -b pac_test2.log pac_test4.log > pac_test.log configure:30412: $? = 0 configure:30513: result: yes configure:30551: checking how to get verbose linking output from gfortran configure:30561: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:30561: $? = 0 configure:30579: gfortran -o conftest -O0 -fPIC -O2 -v -L/usr/X11/lib conftest.f Using built-in specs. Target: x86_64-apple-darwin16 Thread model: posix gcc version 5.4.0 (MacPorts gcc5 5.4.0_2) /opt/local/libexec/gcc/x86_64-apple-darwin16/5.4.0/f951 conftest.f -ffixed-form -fPIC -quiet -dumpbase conftest.f -mmacosx-version-min=10.12.7 -mtune=core2 -auxbase conftest -O0 -O2 -version -fPIC -fintrinsic-modules-path /opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/finclude -o /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//ccMSF7VY.s GNU Fortran (MacPorts gcc5 5.4.0_2) version 5.4.0 (x86_64-apple-darwin16) compiled by GNU C version 5.4.0, GMP version 6.1.2, MPFR version 3.1.5, MPC version 1.0.3 warning: MPFR header version 3.1.5 differs from library version 3.1.6. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran2008 (MacPorts gcc5 5.4.0_2) version 5.4.0 (x86_64-apple-darwin16) compiled by GNU C version 5.4.0, GMP version 6.1.2, MPFR version 3.1.5, MPC version 1.0.3 warning: MPFR header version 3.1.5 differs from library version 3.1.6. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 /opt/local/bin/as -v -arch x86_64 -force_cpusubtype_ALL -o /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//cchAS4dc.o /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//ccMSF7VY.s Apple Inc version cctools-895, GNU assembler version 1.38 Reading specs from /opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../../libgfortran.spec rename spec lib to liborig /opt/local/libexec/gcc/x86_64-apple-darwin16/5.4.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.12.7 -weak_reference_mismatches non-weak -o conftest -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//cchAS4dc.o -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v collect2 version 5.4.0 /opt/local/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.12.7 -weak_reference_mismatches non-weak -o conftest -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//cchAS4dc.o -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-274.2 configured to support archs: i386 x86_64 x86_64h armv6 armv7 armv7s armv7m armv7k arm64 (tvOS) Library search paths: /usr/X11/lib /opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 /opt/local/lib/gcc5 /usr/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ /opt/local/bin/nm -n /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//cchAS4dc.o configure:30662: result: -v configure:30664: checking for Fortran 77 libraries of gfortran configure:30687: gfortran -o conftest -O0 -fPIC -O2 -v -L/usr/X11/lib conftest.f Using built-in specs. Target: x86_64-apple-darwin16 Thread model: posix gcc version 5.4.0 (MacPorts gcc5 5.4.0_2) /opt/local/libexec/gcc/x86_64-apple-darwin16/5.4.0/f951 conftest.f -ffixed-form -fPIC -quiet -dumpbase conftest.f -mmacosx-version-min=10.12.7 -mtune=core2 -auxbase conftest -O0 -O2 -version -fPIC -fintrinsic-modules-path /opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/finclude -o /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//ccTecDfY.s GNU Fortran (MacPorts gcc5 5.4.0_2) version 5.4.0 (x86_64-apple-darwin16) compiled by GNU C version 5.4.0, GMP version 6.1.2, MPFR version 3.1.5, MPC version 1.0.3 warning: MPFR header version 3.1.5 differs from library version 3.1.6. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran2008 (MacPorts gcc5 5.4.0_2) version 5.4.0 (x86_64-apple-darwin16) compiled by GNU C version 5.4.0, GMP version 6.1.2, MPFR version 3.1.5, MPC version 1.0.3 warning: MPFR header version 3.1.5 differs from library version 3.1.6. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 /opt/local/bin/as -v -arch x86_64 -force_cpusubtype_ALL -o /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//ccfnN4e3.o /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//ccTecDfY.s Apple Inc version cctools-895, GNU assembler version 1.38 Reading specs from /opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../../libgfortran.spec rename spec lib to liborig /opt/local/libexec/gcc/x86_64-apple-darwin16/5.4.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.12.7 -weak_reference_mismatches non-weak -o conftest -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//ccfnN4e3.o -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v collect2 version 5.4.0 /opt/local/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.12.7 -weak_reference_mismatches non-weak -o conftest -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//ccfnN4e3.o -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-274.2 configured to support archs: i386 x86_64 x86_64h armv6 armv7 armv7s armv7m armv7k arm64 (tvOS) Library search paths: /usr/X11/lib /opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 /opt/local/lib/gcc5 /usr/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ /opt/local/bin/nm -n /var/folders/9b/8zc7pkts7_70cdm36hdldvg40000gq/T//ccfnN4e3.o configure:30883: result: -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. -lgfortran -lquadmath -lm configure:30899: checking whether gfortran accepts the FLIBS found by autoconf configure:30915: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f >&5 configure:30915: $? = 0 configure:30917: result: yes configure:30955: checking whether gcc links with FLIBS found by autoconf configure:30980: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. -lgfortran -lquadmath -lm >&5 configure:30980: $? = 0 configure:30982: result: yes configure:31032: checking whether Fortran 77 and C objects are compatible configure:31111: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:31111: $? = 0 configure:31114: mv conftest.o pac_conftest.o configure:31117: $? = 0 configure:31126: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f pac_conftest.o >&5 configure:31126: $? = 0 configure:31129: result: yes configure:31288: checking for linker for Fortran main program configure:31309: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:31309: $? = 0 configure:31368: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:31368: $? = 0 configure:31371: mv conftest.o pac_conftest.o configure:31374: $? = 0 configure:31383: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f pac_conftest.o >&5 configure:31383: $? = 0 configure:31385: result: Use Fortran to link programs configure:31496: checking for Fortran 77 name mangling configure:31518: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:31518: $? = 0 configure:31521: mv conftest.o f77conftest.o configure:31524: $? = 0 configure:31549: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c f77conftest.o -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. -lgfortran -lquadmath -lm >&5 configure:31549: $? = 0 configure:31672: result: lower uscore configure:31738: checking for libraries to link Fortran main with C stdio routines configure:31764: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:31764: $? = 0 configure:31767: mv conftest.o pac_conftest.o configure:31770: $? = 0 configure:31789: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f pac_conftest.o >&5 configure:31789: $? = 0 configure:31820: result: none configure:31871: checking whether Fortran init will work with C configure:31893: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:31893: $? = 0 configure:31896: mv conftest.o pac_f77conftest.o configure:31899: $? = 0 configure:31943: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c pac_f77conftest.o >&5 configure:31943: $? = 0 configure:31966: result: yes configure:32065: checking for extension for Fortran 90 programs configure:32080: gfortran -c -O0 -fPIC conftest.f90 >&5 configure:32080: $? = 0 configure:32082: result: f90 configure:32124: checking whether the Fortran 90 compiler (gfortran -O0 -fPIC -L/usr/X11/lib) works configure:32135: gfortran -o conftest -O0 -fPIC -L/usr/X11/lib conftest.f90 >&5 configure:32135: $? = 0 configure:32138: result: yes configure:32140: checking whether the Fortran 90 compiler (gfortran -O0 -fPIC -L/usr/X11/lib) is a cross-compiler configure:32146: gfortran -o conftest -O0 -fPIC -L/usr/X11/lib conftest.f90 >&5 configure:32146: $? = 0 configure:32146: ./conftest configure:32146: $? = 0 configure:32155: result: no configure:32178: checking whether Fortran 90 compiler works with Fortran 77 compiler configure:32206: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:32206: $? = 0 configure:32210: mv conftest.o pac_f77conftest.o configure:32213: $? = 0 configure:32234: gfortran -o conftest -O0 -fPIC -L/usr/X11/lib conftest.f90 pac_f77conftest.o >&5 configure:32234: $? = 0 configure:32276: result: yes configure:32338: checking for shared library (esp. rpath) characteristics of F77 configure:32431: result: done (results in src/env/f77_shlib.conf) configure:32442: checking whether Fortran 77 accepts ! for comments configure:32460: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:32460: $? = 0 configure:32477: result: yes configure:32487: checking for include directory flag for Fortran configure:32514: gfortran -c -I src -O0 -fPIC -O2 conftest.f >&5 configure:32514: $? = 0 configure:32532: result: -I configure:32540: checking for Fortran 77 flag for library directories configure:32559: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:32559: $? = 0 configure:32563: mv conftest.o pac_f77conftest.o configure:32566: $? = 0 configure:32569: test -d conftestdir || mkdir conftestdir configure:32572: $? = 0 configure:32575: ar cru conftestdir/libf77conftest.a pac_f77conftest.o configure:32578: $? = 0 configure:32581: ranlib conftestdir/libf77conftest.a configure:32584: $? = 0 configure:32602: gfortran -o conftest -O0 -fPIC -O2 -Lconftestdir -L/usr/X11/lib conftest.f -lf77conftest >&5 configure:32602: $? = 0 configure:32622: result: -L configure:32698: checking whether Fortran 77 compiler processes .F files with C preprocessor configure:32719: gfortran -c -O0 -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.F >&5 configure:32719: $? = 0 configure:32787: result: yes configure:32795: checking whether gfortran allows mismatched arguments configure:32818: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:32818: $? = 0 configure:32862: result: yes configure:32908: checking for Fortran 2008 support configure:32934: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c:44:33: fatal error: ISO_Fortran_binding.h: No such file or directory compilation terminated. configure:32934: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | /* end confdefs.h. */ | | | #include | | int foo_c(CFI_cdesc_t * a_desc, CFI_cdesc_t * b_desc) | { | char * a_row = (char*) a_desc->base_addr; | if (a_desc->type != CFI_type_int) { return 1; } | if (a_desc->rank != 2) { return 2; } | if (a_desc->dim[1].extent != b_desc->dim[0].extent) { return 3; } | return 0; | } | configure:33030: gfortran -o conftest -O0 -fPIC -L/usr/X11/lib conftest.f90 conftest1.o >&5 gfortran: error: conftest1.o: No such file or directory configure:33030: $? = 1 configure: failed program was: | | | MODULE F08TS_MODULE | IMPLICIT NONE | | ! Test public, private, protected | REAL, PUBLIC :: x | REAL, PRIVATE :: y | LOGICAL, PROTECTED :: z | | ! Test abstract | ABSTRACT INTERFACE | SUBROUTINE user_func(x, y) | INTEGER :: x(*) | REAL :: y | END SUBROUTINE | END INTERFACE | | ! Test TS 29113 assumed type , assumed rank and bind(C) | INTERFACE | FUNCTION FOO(A, B, C) & | BIND(C,name="foo_c") RESULT(err) | USE, intrinsic :: iso_c_binding, ONLY : c_int | TYPE(*), DIMENSION(..) :: A, B, C | INTEGER(c_int) :: err | END FUNCTION FOO | END INTERFACE | | CONTAINS | | ! Test TS 29113 asychronous attribute and optional | SUBROUTINE test1(buf, count, ierr) | INTEGER, ASYNCHRONOUS :: buf(*) | INTEGER :: count | INTEGER, OPTIONAL :: ierr | END SUBROUTINE | | ! Test procedure type and non-bind(c) x in C_FUNCLOC(x) | SUBROUTINE test2(func) | USE, INTRINSIC :: ISO_C_BINDING, ONLY : C_FUNLOC, C_FUNPTR | PROCEDURE(user_func) :: func | TYPE(C_FUNPTR) :: errhandler_fn | errhandler_fn = C_FUNLOC(func) | END SUBROUTINE | | ! Test intrinsic storage_size | SUBROUTINE test3(x, size) | CHARACTER, DIMENSION(..) :: x | INTEGER, INTENT(OUT) :: size | size = storage_size(x)/8 | END SUBROUTINE test3 | | END MODULE | | !============================================== | PROGRAM MAIN | USE :: F08TS_MODULE, ONLY : FOO | IMPLICIT NONE | | INTEGER, DIMENSION(4,4) :: A, B | INTEGER, DIMENSION(2,2) :: C | INTEGER :: ERRCODE | | ! Test contiguous and non-contiguous array section passing | ! and linkage with C code | ERRCODE = FOO(A(1:4:2, :), B(:, 2:4:2), C) | | END PROGRAM | configure:33054: result: no configure:33119: checking for shared library (esp. rpath) characteristics of FC configure:33212: result: done (results in src/env/fc_shlib.conf) configure:33228: checking whether the Fortran 90 compiler (gfortran -O0 -fPIC -L/usr/X11/lib) works configure:33239: gfortran -o conftest -O0 -fPIC -L/usr/X11/lib conftest.f90 >&5 configure:33239: $? = 0 configure:33242: result: yes configure:33244: checking whether the Fortran 90 compiler (gfortran -O0 -fPIC -L/usr/X11/lib) is a cross-compiler configure:33250: gfortran -o conftest -O0 -fPIC -L/usr/X11/lib conftest.f90 >&5 configure:33250: $? = 0 configure:33250: ./conftest configure:33250: $? = 0 configure:33259: result: no configure:33305: checking for Fortran 90 module extension configure:33327: gfortran -c -O0 -fPIC conftest.f90 >&5 configure:33327: $? = 0 configure:33423: result: mod configure:33435: checking for Fortran 90 module include flag configure:33463: gfortran -c -O0 -fPIC conftest.f90 >&5 configure:33463: $? = 0 configure:33500: gfortran -c -O0 -fPIC -Iconftestdir conftest.f90 >&5 configure:33500: $? = 0 configure:33559: result: -I configure:33567: checking for Fortran 90 module output directory flag configure:33598: gfortran -c -O0 -fPIC conftest.f90 >&5 configure:33598: $? = 0 configure:33652: gfortran -c -O0 -fPIC -Jconftestdir conftest.f90 >&5 configure:33652: $? = 0 configure:33692: result: -J configure:33763: checking whether Fortran 90 compiler accepts option -O2 configure:33808: gfortran -o conftest -O0 -fPIC -L/usr/X11/lib conftest.f90 > pac_test1.log 2>&1 configure:33808: $? = 0 configure:33839: gfortran -o conftest -O2 -O0 -fPIC -L/usr/X11/lib conftest.f90 > pac_test2.log 2>&1 configure:33839: $? = 0 configure:33847: diff -b pac_test1.log pac_test2.log > pac_test.log configure:33850: $? = 0 configure:33950: result: yes configure:33955: checking whether routines compiled with -O2 can be linked with ones compiled without -O2 configure:33994: gfortran -c -O0 -fPIC conftest.f90 > pac_test3.log 2>&1 configure:33994: $? = 0 configure:33998: mv conftest.o pac_conftest.o configure:34001: $? = 0 configure:34039: gfortran -o conftest -O2 -O0 -fPIC -L/usr/X11/lib conftest.f90 pac_conftest.o > pac_test4.log 2>&1 configure:34039: $? = 0 configure:34047: diff -b pac_test2.log pac_test4.log > pac_test.log configure:34050: $? = 0 configure:34151: result: yes configure:34183: checking whether Fortran 90 compiler processes .F90 files with C preprocessor configure:34204: gfortran -c -O0 -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.F90 >&5 configure:34204: $? = 0 configure:34272: result: yes configure:34293: checking what libraries are needed to link Fortran90 programs with C routines that use stdio configure:34319: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:34319: $? = 0 configure:34323: mv conftest.o pac_conftest.o configure:34326: $? = 0 configure:34343: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 pac_conftest.o >&5 configure:34343: $? = 0 configure:34384: result: none configure:34403: checking whether TRUE has been defined configure:34416: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:47:8: error: 'TRUE' undeclared (first use in this function) return TRUE; ^ conftest.c:47:8: note: each undeclared identifier is reported only once for each function it appears in configure:34416: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | /* end confdefs.h. */ | | int | main () | { | return TRUE; | ; | return 0; | } configure:34422: result: no configure:34455: checking whether the C++ compiler g++ can build an executable configure:34484: g++ -o conftest -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp >&5 configure:34484: $? = 0 configure:34498: result: yes configure:34505: checking whether C++ compiler works with string configure:34528: g++ -c -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp >&5 configure:34528: $? = 0 configure:34541: result: yes configure:34554: checking whether the compiler supports exceptions configure:34577: g++ -c -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp >&5 configure:34577: $? = 0 configure:34591: result: yes configure:34599: checking whether the compiler recognizes bool as a built-in type configure:34626: g++ -c -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp >&5 configure:34626: $? = 0 configure:34640: result: yes configure:34648: checking whether the compiler implements namespaces configure:34671: g++ -c -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp >&5 configure:34671: $? = 0 configure:34685: result: yes configure:34702: checking whether available configure:34721: g++ -c -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp >&5 configure:34721: $? = 0 configure:34728: result: yes configure:34731: checking whether the compiler implements the namespace std configure:34758: g++ -c -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp >&5 configure:34758: $? = 0 configure:34773: result: yes configure:34782: checking whether available configure:34801: g++ -c -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp >&5 conftest.cpp:49:16: fatal error: math: No such file or directory compilation terminated. configure:34801: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | /* end confdefs.h. */ | | #include | | int | main () | { | using namespace std; | ; | return 0; | } configure:34808: result: no configure:34833: checking for GNU g++ version configure:34858: g++ -o conftest -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp >&5 configure:34858: $? = 0 configure:34858: ./conftest configure:34858: $? = 0 configure:34868: result: 5 . 4 configure:34924: checking for shared library (esp. rpath) characteristics of CXX configure:35017: result: done (results in src/env/cxx_shlib.conf) configure:35028: checking whether C++ compiler accepts option -O2 configure:35080: g++ -o conftest -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp > pac_test1.log 2>&1 configure:35080: $? = 0 configure:35111: g++ -o conftest -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp > pac_test2.log 2>&1 configure:35111: $? = 0 configure:35119: diff -b pac_test1.log pac_test2.log > pac_test.log configure:35122: $? = 0 configure:35222: result: yes configure:35227: checking whether routines compiled with -O2 can be linked with ones compiled without -O2 configure:35267: g++ -c -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp > pac_test3.log 2>&1 configure:35267: $? = 0 configure:35271: mv conftest.o pac_conftest.o configure:35274: $? = 0 configure:35318: g++ -o conftest -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp pac_conftest.o > pac_test4.log 2>&1 configure:35318: $? = 0 configure:35326: diff -b pac_test2.log pac_test4.log > pac_test.log configure:35329: $? = 0 configure:35430: result: yes configure:35483: checking for perl configure:35501: found /usr/bin/perl configure:35513: result: /usr/bin/perl configure:35526: checking for ar configure:35553: result: ar configure:35589: checking for ranlib configure:35616: result: ranlib configure:35635: checking for killall configure:35651: found /usr/bin/killall configure:35662: result: killall configure:35705: checking whether install works configure:35713: result: yes configure:35728: checking whether mkdir -p works configure:35744: result: yes configure:35762: checking for make configure:35778: found /usr/bin/make configure:35789: result: make configure:35803: checking whether clock skew breaks make configure:35828: result: no configure:35838: checking whether make supports include configure:35866: result: yes configure:35875: checking whether make allows comments in actions configure:35902: result: yes configure:35916: checking for virtual path format configure:35959: result: VPATH configure:35969: checking whether make sets CFLAGS configure:35995: result: yes configure:36044: checking for bash configure:36062: found /bin/bash configure:36074: result: /bin/bash configure:36097: checking whether /bin/bash supports arrays configure:36106: result: yes configure:36314: checking for doctext configure:36345: result: false configure:36358: checking for an ANSI C-conforming const configure:36424: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36424: $? = 0 configure:36431: result: yes configure:36439: checking for working volatile configure:36458: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36458: $? = 0 configure:36465: result: yes configure:36473: checking for C/C++ restrict keyword configure:36498: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36498: $? = 0 configure:36506: result: __restrict configure:36519: checking for inline configure:36535: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36535: $? = 0 configure:36543: result: inline configure:36566: checking whether __attribute__ allowed configure:36583: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36583: $? = 0 configure:36590: result: yes configure:36592: checking whether __attribute__((format)) allowed configure:36609: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36609: $? = 0 configure:36616: result: yes configure:36626: checking if C compiler supports __builtin_expect configure:36642: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:36642: $? = 0 configure:36645: result: yes configure:36677: checking whether byte ordering is bigendian configure:36692: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36692: $? = 0 configure:36737: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36737: $? = 0 configure:36755: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:60:4: error: unknown type name 'not' not big endian ^ conftest.c:60:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian' not big endian ^ configure:36755: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:36883: result: no configure:36921: checking whether C compiler allows unaligned doubles configure:36954: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:36954: $? = 0 configure:36954: ./conftest configure:36954: $? = 0 configure:36964: result: yes configure:36983: checking whether gcc supports __func__ configure:36999: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:36999: $? = 0 configure:37006: result: yes configure:37043: checking whether long double is supported configure:37060: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:37060: $? = 0 configure:37067: result: yes configure:37076: checking whether long long is supported configure:37093: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:37093: $? = 0 configure:37100: result: yes configure:37111: checking for max C struct integer alignment configure:37229: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37229: $? = 0 configure:37229: ./conftest configure:37229: $? = 0 configure:37241: result: eight configure:37272: checking for max C struct floating point alignment configure:37374: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37374: $? = 0 configure:37374: ./conftest configure:37374: $? = 0 configure:37386: result: sixteen configure:37419: checking for max C struct alignment of structs with doubles configure:37490: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37490: $? = 0 configure:37490: ./conftest configure:37490: $? = 0 configure:37502: result: eight configure:37509: checking for max C struct floating point alignment with long doubles configure:37581: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37581: $? = 0 configure:37581: ./conftest configure:37581: $? = 0 configure:37593: result: sixteen configure:37603: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. configure:37638: checking if alignment of structs with doubles is based on position configure:37672: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37672: $? = 0 configure:37672: ./conftest configure:37672: $? = 0 configure:37684: result: no configure:37700: checking if alignment of structs with long long ints is based on position configure:37736: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37736: $? = 0 configure:37736: ./conftest configure:37736: $? = 0 configure:37748: result: no configure:37764: checking if double alignment breaks rules, find actual alignment configure:37811: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37811: $? = 0 configure:37811: ./conftest configure:37811: $? = 0 configure:37823: result: no configure:37839: checking for alignment restrictions on pointers configure:37859: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37859: $? = 0 configure:37859: ./conftest configure:37859: $? = 0 configure:37876: result: int or better configure:37888: checking size of char configure:37893: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37893: $? = 0 configure:37893: ./conftest configure:37893: $? = 0 configure:37907: result: 1 configure:37921: checking size of unsigned char configure:37926: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37926: $? = 0 configure:37926: ./conftest configure:37926: $? = 0 configure:37940: result: 1 configure:37954: checking size of short configure:37959: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37959: $? = 0 configure:37959: ./conftest configure:37959: $? = 0 configure:37973: result: 2 configure:37987: checking size of unsigned short configure:37992: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:37992: $? = 0 configure:37992: ./conftest configure:37992: $? = 0 configure:38006: result: 2 configure:38020: checking size of int configure:38025: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38025: $? = 0 configure:38025: ./conftest configure:38025: $? = 0 configure:38039: result: 4 configure:38053: checking size of unsigned int configure:38058: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38058: $? = 0 configure:38058: ./conftest configure:38058: $? = 0 configure:38072: result: 4 configure:38086: checking size of long configure:38091: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38091: $? = 0 configure:38091: ./conftest configure:38091: $? = 0 configure:38105: result: 8 configure:38119: checking size of unsigned long configure:38124: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38124: $? = 0 configure:38124: ./conftest configure:38124: $? = 0 configure:38138: result: 8 configure:38152: checking size of long long configure:38157: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38157: $? = 0 configure:38157: ./conftest configure:38157: $? = 0 configure:38171: result: 8 configure:38185: checking size of unsigned long long configure:38190: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38190: $? = 0 configure:38190: ./conftest configure:38190: $? = 0 configure:38204: result: 8 configure:38218: checking size of float configure:38223: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38223: $? = 0 configure:38223: ./conftest configure:38223: $? = 0 configure:38237: result: 4 configure:38251: checking size of double configure:38256: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38256: $? = 0 configure:38256: ./conftest configure:38256: $? = 0 configure:38270: result: 8 configure:38284: checking size of long double configure:38289: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38289: $? = 0 configure:38289: ./conftest configure:38289: $? = 0 configure:38303: result: 16 configure:38317: checking size of void * configure:38322: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38322: $? = 0 configure:38322: ./conftest configure:38322: $? = 0 configure:38336: result: 8 configure:38347: checking for ANSI C header files configure:38451: result: yes configure:38461: checking stddef.h usability configure:38461: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38461: $? = 0 configure:38461: result: yes configure:38461: checking stddef.h presence configure:38461: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:38461: $? = 0 configure:38461: result: yes configure:38461: checking for stddef.h configure:38461: result: yes configure:38475: checking size of wchar_t configure:38480: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38480: $? = 0 configure:38480: ./conftest configure:38480: $? = 0 configure:38499: result: 4 configure:38514: checking size of float_int configure:38519: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38519: $? = 0 configure:38519: ./conftest configure:38519: $? = 0 configure:38534: result: 8 configure:38548: checking size of double_int configure:38553: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38553: $? = 0 configure:38553: ./conftest configure:38553: $? = 0 configure:38568: result: 16 configure:38582: checking size of long_int configure:38587: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38587: $? = 0 configure:38587: ./conftest configure:38587: $? = 0 configure:38602: result: 16 configure:38616: checking size of short_int configure:38621: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38621: $? = 0 configure:38621: ./conftest configure:38621: $? = 0 configure:38636: result: 8 configure:38650: checking size of two_int configure:38655: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38655: $? = 0 configure:38655: ./conftest configure:38655: $? = 0 configure:38670: result: 8 configure:38684: checking size of long_double_int configure:38689: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38689: $? = 0 configure:38689: ./conftest configure:38689: $? = 0 configure:38704: result: 32 configure:38717: checking sys/bitypes.h usability configure:38717: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c:117:25: fatal error: sys/bitypes.h: No such file or directory compilation terminated. configure:38717: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:38717: result: no configure:38717: checking sys/bitypes.h presence configure:38717: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c conftest.c:84:25: fatal error: sys/bitypes.h: No such file or directory compilation terminated. configure:38717: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | /* end confdefs.h. */ | #include configure:38717: result: no configure:38717: checking for sys/bitypes.h configure:38717: result: no configure:38730: checking for inttypes.h configure:38730: result: yes configure:38730: checking for stdint.h configure:38730: result: yes configure:38742: checking for int8_t configure:38742: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38742: $? = 0 configure:38742: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:123:12: error: size of array 'test_array' is negative static int test_array [1 - 2 * !((int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:38742: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 8 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 1) | < (int8_t) (((((int8_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:38742: result: yes configure:38753: checking for int16_t configure:38753: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38753: $? = 0 configure:38753: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:123:12: error: size of array 'test_array' is negative static int test_array [1 - 2 * !((int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:38753: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 16 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 1) | < (int16_t) (((((int16_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:38753: result: yes configure:38764: checking for int32_t configure:38764: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38764: $? = 0 configure:38764: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:124:53: warning: integer overflow in expression [-Woverflow] < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))]; ^ conftest.c:123:12: error: storage size of 'test_array' isn't constant static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:38764: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 32 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1) | < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:38764: result: yes configure:38775: checking for int64_t configure:38775: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38775: $? = 0 configure:38775: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:124:53: warning: integer overflow in expression [-Woverflow] < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))]; ^ conftest.c:123:12: error: storage size of 'test_array' isn't constant static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1) ^ configure:38775: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | enum { N = 64 / 2 - 1 }; | int | main () | { | static int test_array [1 - 2 * !((int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 1) | < (int64_t) (((((int64_t) 1 << N) << N) - 1) * 2 + 2))]; | test_array [0] = 0; | return test_array [0]; | | ; | return 0; | } configure:38775: result: yes configure:38816: checking for uint8_t configure:38816: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38816: $? = 0 configure:38816: result: yes configure:38830: checking for uint16_t configure:38830: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38830: $? = 0 configure:38830: result: yes configure:38842: checking for uint32_t configure:38842: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38842: $? = 0 configure:38842: result: yes configure:38856: checking for uint64_t configure:38856: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38856: $? = 0 configure:38856: result: yes configure:38898: checking stdbool.h usability configure:38898: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38898: $? = 0 configure:38898: result: yes configure:38898: checking stdbool.h presence configure:38898: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:38898: $? = 0 configure:38898: result: yes configure:38898: checking for stdbool.h configure:38898: result: yes configure:38898: checking complex.h usability configure:38898: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:38898: $? = 0 configure:38898: result: yes configure:38898: checking complex.h presence configure:38898: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:38898: $? = 0 configure:38898: result: yes configure:38898: checking for complex.h configure:38898: result: yes configure:38912: checking size of _Bool configure:38917: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38917: $? = 0 configure:38917: ./conftest configure:38917: $? = 0 configure:38936: result: 1 configure:38950: checking size of float _Complex configure:38955: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38955: $? = 0 configure:38955: ./conftest configure:38955: $? = 0 configure:38974: result: 8 configure:38988: checking size of double _Complex configure:38993: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:38993: $? = 0 configure:38993: ./conftest configure:38993: $? = 0 configure:39012: result: 16 configure:39028: checking size of long double _Complex configure:39033: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:39033: $? = 0 configure:39033: ./conftest configure:39033: $? = 0 configure:39052: result: 32 configure:39067: checking for _Bool configure:39067: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:39067: $? = 0 configure:39067: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:136:20: error: expected expression before ')' token if (sizeof ((_Bool))) ^ configure:39067: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:39067: result: yes configure:39076: checking for float _Complex configure:39076: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:39076: $? = 0 configure:39076: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:137:29: error: expected expression before ')' token if (sizeof ((float _Complex))) ^ configure:39076: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((float _Complex))) | return 0; | ; | return 0; | } configure:39076: result: yes configure:39085: checking for double _Complex configure:39085: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:39085: $? = 0 configure:39085: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:138:30: error: expected expression before ')' token if (sizeof ((double _Complex))) ^ configure:39085: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((double _Complex))) | return 0; | ; | return 0; | } configure:39085: result: yes configure:39098: checking for long double _Complex configure:39098: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:39098: $? = 0 configure:39098: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:139:35: error: expected expression before ')' token if (sizeof ((long double _Complex))) ^ configure:39098: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((long double _Complex))) | return 0; | ; | return 0; | } configure:39098: result: yes configure:39518: checking for size of Fortran type integer configure:39559: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:39559: $? = 0 configure:39563: mv conftest.o pac_conftest.o configure:39566: $? = 0 configure:39593: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f pac_conftest.o >&5 configure:39593: $? = 0 configure:39593: ./conftest configure:39593: $? = 0 configure:39631: result: 4 configure:39646: checking for size of Fortran type real configure:39687: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:39687: $? = 0 configure:39691: mv conftest.o pac_conftest.o configure:39694: $? = 0 configure:39721: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f pac_conftest.o >&5 configure:39721: $? = 0 configure:39721: ./conftest configure:39721: $? = 0 configure:39759: result: 4 configure:39774: checking for size of Fortran type double precision configure:39815: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:39815: $? = 0 configure:39819: mv conftest.o pac_conftest.o configure:39822: $? = 0 configure:39849: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f pac_conftest.o >&5 configure:39849: $? = 0 configure:39849: ./conftest configure:39849: $? = 0 configure:39887: result: 8 configure:39910: checking whether integer*1 is supported configure:39921: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:39921: $? = 0 configure:39928: result: yes configure:39930: checking whether integer*2 is supported configure:39941: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:39941: $? = 0 configure:39948: result: yes configure:39950: checking whether integer*4 is supported configure:39961: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:39961: $? = 0 configure:39968: result: yes configure:39970: checking whether integer*8 is supported configure:39981: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:39981: $? = 0 configure:39988: result: yes configure:39990: checking whether integer*16 is supported configure:40001: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:40001: $? = 0 configure:40008: result: yes configure:40010: checking whether real*4 is supported configure:40021: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:40021: $? = 0 configure:40028: result: yes configure:40030: checking whether real*8 is supported configure:40041: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:40041: $? = 0 configure:40048: result: yes configure:40050: checking whether real*16 is supported configure:40061: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:40061: $? = 0 configure:40068: result: yes configure:40167: checking for C type matching Fortran real configure:40175: result: float configure:40190: checking for C type matching Fortran double configure:40197: result: double configure:40526: checking for C type matching Fortran integer configure:40533: result: int configure:40686: checking for values of Fortran logicals configure:40725: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:40725: $? = 0 configure:40728: mv conftest.o pac_conftest.o configure:40731: $? = 0 configure:40763: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f pac_conftest.o >&5 configure:40763: $? = 0 configure:40763: ./conftest configure:40763: $? = 0 configure:40801: result: True is 1 and False is 0 configure:40912: checking for Fortran 90 integer kind for 8-byte integers configure:40952: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 >&5 configure:40952: $? = 0 configure:40952: ./conftest configure:40952: $? = 0 configure:40969: result: 8 configure:41081: checking for Fortran 90 integer kind for 4-byte integers configure:41121: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 >&5 configure:41121: $? = 0 configure:41121: ./conftest configure:41121: $? = 0 configure:41138: result: 4 configure:41171: checking if real*8 is supported in Fortran 90 configure:41184: gfortran -c -O0 -fPIC -O2 conftest.f90 >&5 configure:41184: $? = 0 configure:41196: result: yes configure:41352: checking size of bool configure:41357: g++ -o conftest -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp >&5 configure:41357: $? = 0 configure:41357: ./conftest configure:41357: $? = 0 configure:41371: result: 1 configure:41413: checking complex usability configure:41413: g++ -c -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp >&5 configure:41413: $? = 0 configure:41413: result: yes configure:41413: checking complex presence configure:41413: g++ -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.cpp configure:41413: $? = 0 configure:41413: result: yes configure:41413: checking for complex configure:41413: result: yes configure:41426: checking size of Complex configure:41431: g++ -o conftest -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp >&5 configure:41431: $? = 0 configure:41431: ./conftest configure:41431: $? = 0 configure:41450: result: 8 configure:41464: checking size of DoubleComplex configure:41469: g++ -o conftest -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp >&5 configure:41469: $? = 0 configure:41469: ./conftest configure:41469: $? = 0 configure:41488: result: 16 configure:41503: checking size of LongDoubleComplex configure:41508: g++ -o conftest -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.cpp >&5 configure:41508: $? = 0 configure:41508: ./conftest configure:41508: $? = 0 configure:41527: result: 32 CFLAGS(='-fPIC -O2') does not contain '-Werror', appending configure:41665: gcc -c -fPIC -O2 -Werror -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c:135:80: error: expected expression before 'int' static const TEST_Datatype test_int __attribute__((type_tag_for_datatype(TEST,int))) = TEST_INT; ^ conftest.c:135:84: error: expected ',' or ';' before ')' token static const TEST_Datatype test_int __attribute__((type_tag_for_datatype(TEST,int))) = TEST_INT; ^ conftest.c:136:1: error: 'pointer_with_type_tag' attribute directive ignored [-Werror=attributes] void test(const void* buffer, TEST_Datatype datatype)__attribute__((pointer_with_type_tag(TEST,1,2))); ^ cc1: all warnings being treated as errors configure:41665: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | /* end confdefs.h. */ | | typedef int TEST_Datatype; | #define TEST_INT ((TEST_Datatype)0x44) | static const TEST_Datatype test_int __attribute__((type_tag_for_datatype(TEST,int))) = TEST_INT; | void test(const void* buffer, TEST_Datatype datatype)__attribute__((pointer_with_type_tag(TEST,1,2))); | int | main () | { | | const int buf[10]; | test(buf, TEST_INT); | ; | return 0; | } configure:41701: checking for alignment restrictions on int64_t configure:41735: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:41735: $? = 0 configure:41735: ./conftest configure:41735: $? = 0 configure:41746: result: no configure:41765: checking for alignment restrictions on int32_t configure:41799: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:41799: $? = 0 configure:41799: ./conftest configure:41799: $? = 0 configure:41810: result: no configure:41829: checking for gcov configure:41845: found /opt/local/bin/gcov configure:41856: result: gcov configure:41978: checking for ANSI C header files configure:42082: result: yes configure:42097: checking for stdlib.h configure:42097: result: yes configure:42097: checking stdarg.h usability configure:42097: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking stdarg.h presence configure:42097: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking for stdarg.h configure:42097: result: yes configure:42097: checking for sys/types.h configure:42097: result: yes configure:42097: checking for string.h configure:42097: result: yes configure:42097: checking for inttypes.h configure:42097: result: yes configure:42097: checking limits.h usability configure:42097: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking limits.h presence configure:42097: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking for limits.h configure:42097: result: yes configure:42097: checking for stddef.h configure:42097: result: yes configure:42097: checking errno.h usability configure:42097: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking errno.h presence configure:42097: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking for errno.h configure:42097: result: yes configure:42097: checking sys/socket.h usability configure:42097: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking sys/socket.h presence configure:42097: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking for sys/socket.h configure:42097: result: yes configure:42097: checking sys/time.h usability configure:42097: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking sys/time.h presence configure:42097: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking for sys/time.h configure:42097: result: yes configure:42097: checking for unistd.h configure:42097: result: yes configure:42097: checking endian.h usability configure:42097: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c:179:20: fatal error: endian.h: No such file or directory compilation terminated. configure:42097: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:42097: result: no configure:42097: checking endian.h presence configure:42097: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c conftest.c:146:20: fatal error: endian.h: No such file or directory compilation terminated. configure:42097: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include configure:42097: result: no configure:42097: checking for endian.h configure:42097: result: no configure:42097: checking assert.h usability configure:42097: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking assert.h presence configure:42097: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking for assert.h configure:42097: result: yes configure:42097: checking sys/param.h usability configure:42097: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking sys/param.h presence configure:42097: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:42097: $? = 0 configure:42097: result: yes configure:42097: checking for sys/param.h configure:42097: result: yes configure:42107: checking for sys/uio.h configure:42127: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42127: $? = 0 configure:42134: result: yes configure:42143: checking for size_t configure:42143: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42143: $? = 0 configure:42143: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:185:21: error: expected expression before ')' token if (sizeof ((size_t))) ^ configure:42143: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:42143: result: yes configure:42159: checking for setitimer configure:42159: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42159: $? = 0 configure:42159: result: yes configure:42159: checking for alarm configure:42159: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42159: $? = 0 configure:42159: result: yes configure:42172: checking for vsnprintf configure:42172: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 conftest.c:174:6: warning: conflicting types for built-in function 'vsnprintf' char vsnprintf (); ^ configure:42172: $? = 0 configure:42172: result: yes configure:42172: checking for vsprintf configure:42172: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 conftest.c:175:6: warning: conflicting types for built-in function 'vsprintf' char vsprintf (); ^ configure:42172: $? = 0 configure:42172: result: yes configure:42184: checking whether vsnprintf needs a declaration configure:42203: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42203: $? = 0 configure:42210: result: no configure:42227: checking for strerror configure:42227: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42227: $? = 0 configure:42227: result: yes configure:42227: checking for strncasecmp configure:42227: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 conftest.c:177:6: warning: conflicting types for built-in function 'strncasecmp' char strncasecmp (); ^ configure:42227: $? = 0 configure:42227: result: yes configure:42236: checking whether strerror_r is declared configure:42236: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42236: $? = 0 configure:42236: result: yes configure:42249: checking for strerror_r configure:42249: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42249: $? = 0 configure:42249: result: yes configure:42258: checking whether strerror_r returns char * configure:42282: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:195:13: error: invalid type argument of unary '*' (have 'int') char x = *strerror_r (0, buf, sizeof buf); ^ conftest.c:196:14: warning: initialization makes pointer from integer without a cast [-Wint-conversion] char *p = strerror_r (0, buf, sizeof buf); ^ configure:42282: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | | char buf[100]; | char x = *strerror_r (0, buf, sizeof buf); | char *p = strerror_r (0, buf, sizeof buf); | return !p || x; | | ; | return 0; | } configure:42320: result: no configure:42330: checking whether strerror_r needs a declaration configure:42348: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42348: $? = 0 configure:42355: result: no configure:42371: checking for snprintf configure:42371: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 conftest.c:180:6: warning: conflicting types for built-in function 'snprintf' char snprintf (); ^ configure:42371: $? = 0 configure:42371: result: yes configure:42382: checking whether snprintf needs a declaration configure:42400: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42400: $? = 0 configure:42407: result: no configure:42423: checking for qsort configure:42423: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42423: $? = 0 configure:42423: result: yes configure:42439: checking for va_copy configure:42465: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42465: $? = 0 configure:42473: result: yes configure:42525: checking for variable argument list macro functionality configure:42541: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42541: $? = 0 configure:42545: result: yes configure:42558: checking for working alloca.h configure:42575: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42575: $? = 0 configure:42583: result: yes configure:42591: checking for alloca configure:42628: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42628: $? = 0 configure:42636: result: yes configure:42760: checking for strdup configure:42760: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 conftest.c:186:6: warning: conflicting types for built-in function 'strdup' char strdup (); ^ configure:42760: $? = 0 configure:42760: result: yes configure:42772: checking whether strdup needs a declaration configure:42790: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42790: $? = 0 configure:42797: result: no configure:42883: checking for mkstemp configure:42883: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42883: $? = 0 configure:42883: result: yes configure:42894: checking whether mkstemp needs a declaration configure:42912: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:42912: $? = 0 configure:42919: result: no configure:42934: checking for fdopen configure:42934: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42934: $? = 0 configure:42934: result: yes configure:42945: checking whether fdopen needs a declaration configure:42963: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c:167:37: error: 'fdopen' undeclared here (not in a function) void (*fptr)(void) = (void(*)(void))fdopen; ^ configure:42963: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | /* end confdefs.h. */ | #include | void (*fptr)(void) = (void(*)(void))fdopen; | int | main () | { | | ; | return 0; | } configure:42970: result: yes configure:42985: checking for putenv configure:42985: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:42985: $? = 0 configure:42985: result: yes configure:42996: checking whether putenv needs a declaration configure:43014: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:43014: $? = 0 configure:43021: result: no configure:43074: checking for clock_gettime configure:43074: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:43074: $? = 0 configure:43074: result: yes configure:43074: checking for clock_getres configure:43074: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:43074: $? = 0 configure:43074: result: yes configure:43074: checking for gethrtime configure:43074: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 Undefined symbols for architecture x86_64: "_gethrtime", referenced from: _main in ccAn9qQm.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:43074: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | /* end confdefs.h. */ | /* Define gethrtime to an innocuous variant, in case declares gethrtime. | For example, HP-UX 11i declares gettimeofday. */ | #define gethrtime innocuous_gethrtime | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char gethrtime (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef gethrtime | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gethrtime (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_gethrtime || defined __stub___gethrtime | choke me | #endif | | int | main () | { | return gethrtime (); | ; | return 0; | } configure:43074: result: no configure:43074: checking for mach_absolute_time configure:43074: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:43074: $? = 0 configure:43074: result: yes configure:43074: checking for gettimeofday configure:43074: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:43074: $? = 0 configure:43074: result: yes configure:43156: checking for library containing clock_gettime configure:43187: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:43187: $? = 0 configure:43204: result: none required configure:43214: checking for library containing clock_getres configure:43245: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:43245: $? = 0 configure:43262: result: none required configure:43275: checking whether struct timespec is defined in time.h configure:43294: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:43294: $? = 0 configure:43302: result: yes configure:43348: checking for CLOCK_REALTIME defined in time.h configure:43367: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:43367: $? = 0 configure:43374: result: yes configure:43933: checking size of MPIR_Bsend_data_t configure:43938: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c >&5 configure:43938: $? = 0 configure:43938: ./conftest configure:43938: $? = 0 configure:43963: result: 96 configure:44029: checking pthread.h usability configure:44029: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:44029: $? = 0 configure:44029: result: yes configure:44029: checking pthread.h presence configure:44029: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:44029: $? = 0 configure:44029: result: yes configure:44029: checking for pthread.h configure:44029: result: yes configure:44047: checking for pthread_key_create in -lpthread configure:44072: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44072: $? = 0 configure:44081: result: yes LIBS(='') does not contain '-lpthread', prepending configure:44102: checking for pthread_yield configure:44102: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 Undefined symbols for architecture x86_64: "_pthread_yield", referenced from: _main in ccjevJlK.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:44102: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | /* end confdefs.h. */ | /* Define pthread_yield to an innocuous variant, in case declares pthread_yield. | For example, HP-UX 11i declares gettimeofday. */ | #define pthread_yield innocuous_pthread_yield | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pthread_yield (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pthread_yield | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pthread_yield (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pthread_yield || defined __stub___pthread_yield | choke me | #endif | | int | main () | { | return pthread_yield (); | ; | return 0; | } configure:44102: result: no configure:44113: checking for pthread_key_create configure:44113: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44113: $? = 0 configure:44113: result: yes configure:44132: checking for pthread_cleanup_push configure:44132: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 Undefined symbols for architecture x86_64: "_pthread_cleanup_push", referenced from: _main in ccv4JXjo.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:44132: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | /* end confdefs.h. */ | /* Define pthread_cleanup_push to an innocuous variant, in case declares pthread_cleanup_push. | For example, HP-UX 11i declares gettimeofday. */ | #define pthread_cleanup_push innocuous_pthread_cleanup_push | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pthread_cleanup_push (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pthread_cleanup_push | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pthread_cleanup_push (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pthread_cleanup_push || defined __stub___pthread_cleanup_push | choke me | #endif | | int | main () | { | return pthread_cleanup_push (); | ; | return 0; | } configure:44132: result: no configure:44142: checking whether pthread_cleanup_push is available (may be a macro in pthread.h) configure:44161: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 conftest.c: In function 'main': conftest.c:189:1: error: expected declaration or statement at end of input } ^ configure:44161: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | /* end confdefs.h. */ | | #include | void f1(void *a) { return; } | int | main () | { | pthread_cleanup_push( f1, (void *)0 ); | ; | return 0; | } configure:44169: result: no configure:44180: checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP configure:44197: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:184:7: error: 'PTHREAD_MUTEX_ERRORCHECK_NP' undeclared (first use in this function) int a=PTHREAD_MUTEX_ERRORCHECK_NP; ^ conftest.c:184:7: note: each undeclared identifier is reported only once for each function it appears in configure:44197: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | /* end confdefs.h. */ | #include | int | main () | { | int a=PTHREAD_MUTEX_ERRORCHECK_NP; | ; | return 0; | } configure:44204: result: no configure:44206: checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK configure:44223: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:44223: $? = 0 configure:44230: result: yes configure:44244: checking whether pthread_mutexattr_settype needs a declaration configure:44262: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:44262: $? = 0 configure:44269: result: no configure:44395: checking for thread local storage specifier configure:44422: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44422: $? = 0 LIBS(='-lpthread ') does not contain '-shared', appending configure:44463: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread -shared >&5 Undefined symbols for architecture x86_64: "___emutls_v.bar", referenced from: _main in ccnwBgRl.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:44463: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | /* end confdefs.h. */ | extern __thread int bar; | int | main () | { | ++bar; | ; | return 0; | } configure:44422: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 conftest.c:182:1: warning: return type defaults to 'int' [-Wimplicit-int] __declspec(thread) int bar = 5; ^ conftest.c: In function '__declspec': conftest.c:182:1: error: parameter 'bar' is initialized conftest.c:185:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before '{' token { ^ conftest.c:182:1: warning: type of 'thread' defaults to 'int' [-Wimplicit-int] __declspec(thread) int bar = 5; ^ conftest.c:182:24: error: declaration for parameter 'bar' but no such parameter __declspec(thread) int bar = 5; ^ conftest.c:189:1: error: expected '{' at end of input } ^ configure:44422: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | /* end confdefs.h. */ | __declspec(thread) int bar = 5; | int | main () | { | ++bar; | ; | return 0; | } LIBS(='-lpthread ') does not contain '-shared', appending configure:44494: result: none configure:44500: checking for getpid configure:44500: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44500: $? = 0 configure:44500: result: yes configure:44520: checking sched.h usability configure:44520: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:44520: $? = 0 configure:44520: result: yes configure:44520: checking sched.h presence configure:44520: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:44520: $? = 0 configure:44520: result: yes configure:44520: checking for sched.h configure:44520: result: yes configure:44532: checking for unistd.h configure:44532: result: yes configure:44544: checking sys/select.h usability configure:44544: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:44544: $? = 0 configure:44544: result: yes configure:44544: checking sys/select.h presence configure:44544: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:44544: $? = 0 configure:44544: result: yes configure:44544: checking for sys/select.h configure:44544: result: yes configure:44557: checking for sched_yield configure:44557: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44557: $? = 0 configure:44557: result: yes configure:44557: checking for yield configure:44557: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 Undefined symbols for architecture x86_64: "_yield", referenced from: _main in ccQHLuEp.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:44557: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | /* end confdefs.h. */ | /* Define yield to an innocuous variant, in case declares yield. | For example, HP-UX 11i declares gettimeofday. */ | #define yield innocuous_yield | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char yield (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef yield | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char yield (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_yield || defined __stub___yield | choke me | #endif | | int | main () | { | return yield (); | ; | return 0; | } configure:44557: result: no configure:44557: checking for usleep configure:44557: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44557: $? = 0 configure:44557: result: yes configure:44557: checking for sleep configure:44557: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44557: $? = 0 configure:44557: result: yes configure:44557: checking for select configure:44557: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44557: $? = 0 configure:44557: result: yes configure:44569: checking whether usleep needs a declaration configure:44587: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:44587: $? = 0 configure:44594: result: no configure:44706: checking for sched_setaffinity configure:44706: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 Undefined symbols for architecture x86_64: "_sched_setaffinity", referenced from: _main in cckt6VJ7.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:44706: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | /* end confdefs.h. */ | /* Define sched_setaffinity to an innocuous variant, in case declares sched_setaffinity. | For example, HP-UX 11i declares gettimeofday. */ | #define sched_setaffinity innocuous_sched_setaffinity | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sched_setaffinity (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sched_setaffinity | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sched_setaffinity (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sched_setaffinity || defined __stub___sched_setaffinity | choke me | #endif | | int | main () | { | return sched_setaffinity (); | ; | return 0; | } configure:44706: result: no configure:44706: checking for sched_getaffinity configure:44706: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 Undefined symbols for architecture x86_64: "_sched_getaffinity", referenced from: _main in cc2WJThS.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:44706: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | /* end confdefs.h. */ | /* Define sched_getaffinity to an innocuous variant, in case declares sched_getaffinity. | For example, HP-UX 11i declares gettimeofday. */ | #define sched_getaffinity innocuous_sched_getaffinity | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sched_getaffinity (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sched_getaffinity | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sched_getaffinity (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sched_getaffinity || defined __stub___sched_getaffinity | choke me | #endif | | int | main () | { | return sched_getaffinity (); | ; | return 0; | } configure:44706: result: no configure:44706: checking for bindprocessor configure:44706: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 Undefined symbols for architecture x86_64: "_bindprocessor", referenced from: _main in cc8WcAnf.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:44706: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | /* end confdefs.h. */ | /* Define bindprocessor to an innocuous variant, in case declares bindprocessor. | For example, HP-UX 11i declares gettimeofday. */ | #define bindprocessor innocuous_bindprocessor | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char bindprocessor (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef bindprocessor | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char bindprocessor (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_bindprocessor || defined __stub___bindprocessor | choke me | #endif | | int | main () | { | return bindprocessor (); | ; | return 0; | } configure:44706: result: no configure:44706: checking for thread_policy_set configure:44706: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:44706: $? = 0 configure:44706: result: yes configure:44787: checking whether thread affinity macros defined configure:44807: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:198:6: warning: missing terminating ' character :'thread macros not defined ^ conftest.c:197:0: error: unterminated #if #if !defined(THREAD_AFFINITY_POLICY) || !defined(THREAD_AFFINITY_TAG_NULL) ^ conftest.c:195:1: error: expected declaration or statement at end of input { ^ configure:44807: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | #define HAVE_THREAD_POLICY_SET 1 | /* end confdefs.h. */ | #include | int | main () | { | | #if !defined(THREAD_AFFINITY_POLICY) || !defined(THREAD_AFFINITY_TAG_NULL) | :'thread macros not defined | | ; | return 0; | } configure:44814: result: no configure:45114: RUNNING CONFIGURE FOR F90 CODE configure:45117: checking whether ln -s works configure:45121: result: yes configure:45131: checking for extension for Fortran 90 programs configure:45146: gfortran -c -O0 -fPIC -O2 conftest.f90 >&5 configure:45146: $? = 0 configure:45148: result: f90 configure:45193: checking for the precision and range of reals configure:45220: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 -lpthread >&5 configure:45220: $? = 0 configure:45220: ./conftest configure:45220: $? = 0 configure:45224: result: 6 , 37 configure:45258: checking for the precision and range of double precision configure:45285: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 -lpthread >&5 configure:45285: $? = 0 configure:45285: ./conftest configure:45285: $? = 0 configure:45289: result: 15 , 307 configure:45323: checking for the range of integer configure:45350: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 -lpthread >&5 configure:45350: $? = 0 configure:45350: ./conftest configure:45350: $? = 0 configure:45354: result: 9 configure:45389: checking for available integer kinds configure:45430: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 -lpthread >&5 configure:45430: $? = 0 configure:45430: ./conftest configure:45430: $? = 0 configure:45434: result: 2 , 1, 4 , 2, 9 , 4, 18 , 8, configure:45469: checking for available integer ranges configure:45498: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:45498: $? = 0 configure:45501: mv conftest.o pac_conftest.o configure:45504: $? = 0 configure:45554: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 pac_conftest.o -lpthread >&5 configure:45554: $? = 0 configure:45554: ./conftest configure:45554: $? = 0 configure:45554: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 pac_conftest.o -lpthread >&5 configure:45554: $? = 0 configure:45554: ./conftest configure:45554: $? = 0 configure:45554: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 pac_conftest.o -lpthread >&5 configure:45554: $? = 0 configure:45554: ./conftest configure:45554: $? = 0 configure:45554: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib conftest.f90 pac_conftest.o -lpthread >&5 configure:45554: $? = 0 configure:45554: ./conftest configure:45554: $? = 0 configure:45578: result: { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, configure:47028: checking for unistd.h configure:47028: result: yes configure:47028: checking for string.h configure:47028: result: yes configure:47028: checking for stdlib.h configure:47028: result: yes configure:47028: checking for sys/socket.h configure:47028: result: yes configure:47028: checking for strings.h configure:47028: result: yes configure:47028: checking for assert.h configure:47028: result: yes configure:47028: checking arpa/inet.h usability configure:47028: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:47028: $? = 0 configure:47028: result: yes configure:47028: checking arpa/inet.h presence configure:47028: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:47028: $? = 0 configure:47028: result: yes configure:47028: checking for arpa/inet.h configure:47028: result: yes configure:47040: checking for snprintf configure:47040: result: yes configure:47051: checking whether snprintf needs a declaration configure:47076: result: no configure:47090: checking for strncasecmp configure:47090: result: yes configure:47123: checking for sys/types.h configure:47123: result: yes configure:47123: checking for sys/param.h configure:47123: result: yes configure:47123: checking for sys/socket.h configure:47123: result: yes configure:47123: checking netinet/in.h usability configure:47123: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:47123: $? = 0 configure:47123: result: yes configure:47123: checking netinet/in.h presence configure:47123: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:47123: $? = 0 configure:47123: result: yes configure:47123: checking for netinet/in.h configure:47123: result: yes configure:47123: checking netinet/tcp.h usability configure:47123: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:47123: $? = 0 configure:47123: result: yes configure:47123: checking netinet/tcp.h presence configure:47123: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:47123: $? = 0 configure:47123: result: yes configure:47123: checking for netinet/tcp.h configure:47123: result: yes configure:47123: checking sys/un.h usability configure:47123: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:47123: $? = 0 configure:47123: result: yes configure:47123: checking sys/un.h presence configure:47123: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:47123: $? = 0 configure:47123: result: yes configure:47123: checking for sys/un.h configure:47123: result: yes configure:47123: checking netdb.h usability configure:47123: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:47123: $? = 0 configure:47123: result: yes configure:47123: checking netdb.h presence configure:47123: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:47123: $? = 0 configure:47123: result: yes configure:47123: checking for netdb.h configure:47123: result: yes configure:47135: checking for library containing socket configure:47166: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:47166: $? = 0 configure:47183: result: none required configure:47191: checking for library containing gethostbyname configure:47222: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:47222: $? = 0 configure:47239: result: none required configure:47251: checking for socket configure:47251: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:47251: $? = 0 configure:47251: result: yes configure:47251: checking for setsockopt configure:47251: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:47251: $? = 0 configure:47251: result: yes configure:47251: checking for gethostbyname configure:47251: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:47251: $? = 0 configure:47251: result: yes configure:47274: checking whether socklen_t is defined (in sys/socket.h if present) configure:47297: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c:218:37: error: conflicting types for 'socklen_t' typedef struct { double a; int b; } socklen_t; ^ In file included from /usr/include/sys/socket.h:95:0, from conftest.c:215: /usr/include/sys/_types/_socklen_t.h:30:28: note: previous declaration of 'socklen_t' was here typedef __darwin_socklen_t socklen_t; ^ configure:47297: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | #define HAVE_THREAD_POLICY_SET 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_SOCKET 1 | #define HAVE_SETSOCKOPT 1 | #define HAVE_GETHOSTBYNAME 1 | #define USE_PMI_PORT 1 | /* end confdefs.h. */ | | #include | #ifdef HAVE_SYS_SOCKET_H | #include | #endif | | typedef struct { double a; int b; } socklen_t; | int | main () | { | socklen_t a;a.a=1.0; | ; | return 0; | } configure:47304: result: yes configure:47312: checking whether struct hostent contains h_addr_list configure:47330: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:47330: $? = 0 configure:47337: result: yes configure:47347: checking whether __attribute__ allowed configure:47371: result: yes configure:47373: checking whether __attribute__((format)) allowed configure:47397: result: yes configure:48695: RUNNING CONFIGURE FOR CH3 DEVICE configure:48934: checking for assert.h configure:48934: result: yes configure:48934: checking for limits.h configure:48934: result: yes configure:48934: checking for string.h configure:48934: result: yes configure:48934: checking for sys/types.h configure:48934: result: yes configure:48934: checking for sys/uio.h configure:48934: result: yes configure:48934: checking uuid/uuid.h usability configure:48934: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:48934: $? = 0 configure:48934: result: yes configure:48934: checking uuid/uuid.h presence configure:48934: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:48934: $? = 0 configure:48934: result: yes configure:48934: checking for uuid/uuid.h configure:48934: result: yes configure:48934: checking time.h usability configure:48934: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:48934: $? = 0 configure:48934: result: yes configure:48934: checking time.h presence configure:48934: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:48934: $? = 0 configure:48934: result: yes configure:48934: checking for time.h configure:48934: result: yes configure:48934: checking ctype.h usability configure:48934: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:48934: $? = 0 configure:48934: result: yes configure:48934: checking ctype.h presence configure:48934: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:48934: $? = 0 configure:48934: result: yes configure:48934: checking for ctype.h configure:48934: result: yes configure:48934: checking for unistd.h configure:48934: result: yes configure:48934: checking for arpa/inet.h configure:48934: result: yes configure:48934: checking for sys/socket.h configure:48934: result: yes configure:48950: checking for net/if.h configure:48950: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:48950: $? = 0 configure:48950: result: yes configure:48975: checking for pid_t configure:48975: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:48975: $? = 0 configure:48975: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c: In function 'main': conftest.c:263:20: error: expected expression before ')' token if (sizeof ((pid_t))) ^ configure:48975: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | #define HAVE_THREAD_POLICY_SET 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_SOCKET 1 | #define HAVE_SETSOCKOPT 1 | #define HAVE_GETHOSTBYNAME 1 | #define USE_PMI_PORT 1 | #define HAVE_H_ADDR_LIST 1 | #define HAVE_GCC_ATTRIBUTE 1 | #define CH3_RANK_BITS 16 | #define HAVE_ASSERT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_TIME_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NET_IF_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((pid_t))) | return 0; | ; | return 0; | } configure:48975: result: yes configure:48990: checking for inet_pton configure:48990: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:48990: $? = 0 configure:48990: result: yes configure:49001: checking for gethostname configure:49001: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:49001: $? = 0 configure:49001: result: yes configure:49013: checking whether gethostname needs a declaration configure:49031: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49031: $? = 0 configure:49038: result: no configure:49054: checking for CFUUIDCreate configure:49054: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 Undefined symbols for architecture x86_64: "_CFUUIDCreate", referenced from: _main in ccXjmfMT.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status configure:49054: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | #define HAVE_THREAD_POLICY_SET 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_SOCKET 1 | #define HAVE_SETSOCKOPT 1 | #define HAVE_GETHOSTBYNAME 1 | #define USE_PMI_PORT 1 | #define HAVE_H_ADDR_LIST 1 | #define HAVE_GCC_ATTRIBUTE 1 | #define CH3_RANK_BITS 16 | #define HAVE_ASSERT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_TIME_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NET_IF_H 1 | #define HAVE_INET_PTON 1 | #define HAVE_GETHOSTNAME 1 | /* end confdefs.h. */ | /* Define CFUUIDCreate to an innocuous variant, in case declares CFUUIDCreate. | For example, HP-UX 11i declares gettimeofday. */ | #define CFUUIDCreate innocuous_CFUUIDCreate | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char CFUUIDCreate (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef CFUUIDCreate | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char CFUUIDCreate (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_CFUUIDCreate || defined __stub___CFUUIDCreate | choke me | #endif | | int | main () | { | return CFUUIDCreate (); | ; | return 0; | } configure:49054: result: no configure:49054: checking for uuid_generate configure:49054: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:49054: $? = 0 configure:49054: result: yes configure:49054: checking for time configure:49054: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:49054: $? = 0 configure:49054: result: yes configure:49065: checking for OpenPA atomic primitive availability configure:49104: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49104: $? = 0 configure:49123: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:49123: $? = 0 configure:49163: result: yes configure:49174: checking whether byte ordering is bigendian configure:49380: result: no configure:49805: RUNNING CONFIGURE FOR ch3:nemesis configure:49830: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49830: $? = 0 configure:49861: checking for assert.h configure:49861: result: yes configure:49861: checking for netdb.h configure:49861: result: yes configure:49861: checking for unistd.h configure:49861: result: yes configure:49861: checking for sched.h configure:49861: result: yes configure:49861: checking sys/mman.h usability configure:49861: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking sys/mman.h presence configure:49861: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking for sys/mman.h configure:49861: result: yes configure:49861: checking sys/ioctl.h usability configure:49861: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking sys/ioctl.h presence configure:49861: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking for sys/ioctl.h configure:49861: result: yes configure:49861: checking for sys/socket.h configure:49861: result: yes configure:49861: checking sys/sockio.h usability configure:49861: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking sys/sockio.h presence configure:49861: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking for sys/sockio.h configure:49861: result: yes configure:49861: checking for sys/types.h configure:49861: result: yes configure:49861: checking for errno.h configure:49861: result: yes configure:49861: checking sys/ipc.h usability configure:49861: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking sys/ipc.h presence configure:49861: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking for sys/ipc.h configure:49861: result: yes configure:49861: checking sys/shm.h usability configure:49861: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking sys/shm.h presence configure:49861: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:49861: $? = 0 configure:49861: result: yes configure:49861: checking for sys/shm.h configure:49861: result: yes configure:49877: checking for netinet/in.h configure:49904: result: yes configure:49923: checking signal.h usability configure:49923: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:49923: $? = 0 configure:49923: result: yes configure:49923: checking signal.h presence configure:49923: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:49923: $? = 0 configure:49923: result: yes configure:49923: checking for signal.h configure:49923: result: yes configure:49935: checking for signal configure:49935: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:49935: $? = 0 configure:49935: result: yes configure:50079: checking for mkstemp configure:50079: result: yes configure:50090: checking for rand configure:50090: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:50090: $? = 0 configure:50090: result: yes configure:50101: checking for srand configure:50101: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:50101: $? = 0 configure:50101: result: yes configure:50129: checking for mmap configure:50129: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:50129: $? = 0 configure:50129: result: yes configure:50129: checking for munmap configure:50129: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:50129: $? = 0 configure:50129: result: yes configure:50145: Using a memory-mapped file for shared memory configure:50205: checking whether struct hostent contains h_addr_list configure:50230: result: yes configure:50240: checking whether we can use struct ifconf configure:50263: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:50263: $? = 0 configure:50270: result: yes configure:50284: checking whether we can use struct ifreq configure:50307: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:50307: $? = 0 configure:50314: result: yes configure:50343: checking knem_io.h usability configure:50343: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 conftest.c:292:21: fatal error: knem_io.h: No such file or directory compilation terminated. configure:50343: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | #define HAVE_THREAD_POLICY_SET 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_SOCKET 1 | #define HAVE_SETSOCKOPT 1 | #define HAVE_GETHOSTBYNAME 1 | #define USE_PMI_PORT 1 | #define HAVE_H_ADDR_LIST 1 | #define HAVE_GCC_ATTRIBUTE 1 | #define CH3_RANK_BITS 16 | #define HAVE_ASSERT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_TIME_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NET_IF_H 1 | #define HAVE_INET_PTON 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_UUID_GENERATE 1 | #define HAVE_TIME 1 | #define HAVE_NET_IF_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_SYS_MMAN_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_SOCKIO_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_IPC_H 1 | #define HAVE_SYS_SHM_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_SIGNAL 1 | #define HAVE_MKSTEMP 1 | #define HAVE_RAND 1 | #define HAVE_SRAND 1 | #define HAVE_MMAP 1 | #define HAVE_MUNMAP 1 | #define USE_MMAP_SHM 1 | #define MPID_NEM_INLINE 1 | #define PREFETCH_CELL 1 | #define USE_FASTBOX 1 | #define HAVE_H_ADDR_LIST 1 | #define HAVE_STRUCT_IFCONF 1 | #define HAVE_STRUCT_IFREQ 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:50343: result: no configure:50343: checking knem_io.h presence configure:50343: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c conftest.c:259:21: fatal error: knem_io.h: No such file or directory compilation terminated. configure:50343: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | #define HAVE_THREAD_POLICY_SET 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_SOCKET 1 | #define HAVE_SETSOCKOPT 1 | #define HAVE_GETHOSTBYNAME 1 | #define USE_PMI_PORT 1 | #define HAVE_H_ADDR_LIST 1 | #define HAVE_GCC_ATTRIBUTE 1 | #define CH3_RANK_BITS 16 | #define HAVE_ASSERT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_TIME_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NET_IF_H 1 | #define HAVE_INET_PTON 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_UUID_GENERATE 1 | #define HAVE_TIME 1 | #define HAVE_NET_IF_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_SYS_MMAN_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_SOCKIO_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_IPC_H 1 | #define HAVE_SYS_SHM_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_SIGNAL 1 | #define HAVE_MKSTEMP 1 | #define HAVE_RAND 1 | #define HAVE_SRAND 1 | #define HAVE_MMAP 1 | #define HAVE_MUNMAP 1 | #define USE_MMAP_SHM 1 | #define MPID_NEM_INLINE 1 | #define PREFETCH_CELL 1 | #define USE_FASTBOX 1 | #define HAVE_H_ADDR_LIST 1 | #define HAVE_STRUCT_IFCONF 1 | #define HAVE_STRUCT_IFREQ 1 | /* end confdefs.h. */ | #include configure:50343: result: no configure:50343: checking for knem_io.h configure:50343: result: no configure:53432: ===== configuring src/mpi/romio ===== configure:53597: running /bin/sh ./configure --disable-option-checking '--prefix=/Applications/Amber17/amber16' '--enable-f77' '--enable-fc' '--enable-cxx' '--enable-shared' '--enable-sharedlibs=osx-gcc' 'LDFLAGS=-L/usr/X11/lib' 'F77=gfortran' 'FFLAGS=-O0 -fPIC -O2' 'FC=gfortran' 'FCFLAGS=-O0 -fPIC -O2' 'CC=gcc' 'CFLAGS=-fPIC -O2' 'CXX=g++' --cache-file=/dev/null --srcdir=. configure:53617: ===== done with src/mpi/romio configure ===== configure:53623: sourcing src/mpi/romio/localdefs configure:53432: ===== configuring src/pm/hydra ===== configure:53597: running /bin/sh ./configure --disable-option-checking '--prefix=/Applications/Amber17/amber16' '--enable-f77' '--enable-fc' '--enable-cxx' '--enable-shared' '--enable-sharedlibs=osx-gcc' 'LDFLAGS=-L/usr/X11/lib' 'F77=gfortran' 'FFLAGS=-O0 -fPIC -O2' 'FC=gfortran' 'FCFLAGS=-O0 -fPIC -O2' 'CC=gcc' 'CFLAGS=-fPIC -O2' 'CXX=g++' --cache-file=/dev/null --srcdir=. configure:53617: ===== done with src/pm/hydra configure ===== configure:53648: checking size of OPA_ptr_t configure:53653: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:53653: $? = 0 configure:53653: ./conftest configure:53653: $? = 0 configure:53671: result: 8 configure:53722: checking the sizeof MPI_Offset configure:53729: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:53729: $? = 0 configure:53729: ./conftest configure:53729: $? = 0 configure:53740: result: 8 configure:53808: checking whether the Fortran Offset type works with Fortran 77 configure:53817: gfortran -c -O0 -fPIC -O2 conftest.f >&5 configure:53817: $? = 0 configure:53823: result: yes configure:53837: checking whether the Fortran Offset type works with Fortran 90 configure:53846: gfortran -c -O0 -fPIC -O2 conftest.f90 >&5 configure:53846: $? = 0 configure:53858: result: yes configure:53956: checking for size of MPI_Status configure:53975: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c -lpthread >&5 configure:53975: $? = 0 configure:53975: ./conftest configure:53975: $? = 0 configure:53984: result: 20 configure:54016: checking for BSD/POSIX style global symbol lister configure:54058: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:54058: $? = 0 configure:54106: result: no configure:54142: checking stdio.h usability configure:54142: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:54142: $? = 0 configure:54142: result: yes configure:54142: checking stdio.h presence configure:54142: gcc -E -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c configure:54142: $? = 0 configure:54142: result: yes configure:54142: checking for stdio.h configure:54142: result: yes configure:54152: checking for multiple __attribute__((alias)) support configure:54213: gcc -c -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include conftest.c >&5 configure:54213: $? = 0 configure:54217: cp conftest.o pac_conftest_other.o configure:54220: $? = 0 configure:54283: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib conftest.c pac_conftest_other.o -lpthread >&5 conftest.c:277:21: error: only weak aliases are supported in this configuration extern mpif_cmblk_t MPIFCMB __attribute__ ((alias("mpifcmbr"))); ^ conftest.c:278:21: error: only weak aliases are supported in this configuration extern mpif_cmblk_t mpifcmb __attribute__ ((alias("mpifcmbr"))); ^ configure:54283: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "MPICH" | #define PACKAGE_TARNAME "mpich" | #define PACKAGE_VERSION "3.2" | #define PACKAGE_STRING "MPICH 3.2" | #define PACKAGE_BUGREPORT "discuss@mpich.org" | #define PACKAGE_URL "http://www.mpich.org/" | #define PACKAGE "mpich" | #define VERSION "3.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL | #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL | #define USE_LOGGING MPID_LOGGING_NONE | #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE | #define MPICH_IS_THREADED 1 | #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL | #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX | #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE | #define HAVE_ROMIO 1 | #define HAVE__FUNC__ /**/ | #define HAVE__FUNCTION__ /**/ | #define ENABLE_PVAR_NEM 0 | #define ENABLE_PVAR_RECVQ 0 | #define ENABLE_PVAR_RMA 0 | #define HAVE_LONG_LONG 1 | #define STDCALL | #define F77_NAME_LOWER_USCORE 1 | #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 | #define HAVE_FORTRAN_BINDING 1 | #define HAVE_F08_BINDING 1 | #define TRUE 1 | #define FALSE 0 | #define HAVE_CXX_EXCEPTIONS /**/ | #define HAVE_NAMESPACES /**/ | #define HAVE_NAMESPACE_STD /**/ | #define HAVE_CXX_BINDING 1 | #define HAVE_NAMEPUB_SERVICE 1 | #define restrict __restrict | #define HAVE_GCC_ATTRIBUTE 1 | #define HAVE_BUILTIN_EXPECT 1 | #define WORDS_LITTLEENDIAN 1 | #define HAVE_LONG_DOUBLE 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_MAX_INTEGER_ALIGNMENT 8 | #define HAVE_MAX_STRUCT_ALIGNMENT 8 | #define HAVE_MAX_FP_ALIGNMENT 16 | #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 | #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 | #define SIZEOF_CHAR 1 | #define SIZEOF_UNSIGNED_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_UNSIGNED_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_VOID_P 8 | #define STDC_HEADERS 1 | #define HAVE_STDDEF_H 1 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF_FLOAT_INT 8 | #define SIZEOF_DOUBLE_INT 16 | #define SIZEOF_LONG_INT 16 | #define SIZEOF_SHORT_INT 8 | #define SIZEOF_TWO_INT 8 | #define SIZEOF_LONG_DOUBLE_INT 32 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_INT8_T 1 | #define HAVE_INT16_T 1 | #define HAVE_INT32_T 1 | #define HAVE_INT64_T 1 | #define HAVE_UINT8_T 1 | #define HAVE_UINT16_T 1 | #define HAVE_UINT32_T 1 | #define HAVE_UINT64_T 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_COMPLEX_H 1 | #define SIZEOF__BOOL 1 | #define SIZEOF_FLOAT__COMPLEX 8 | #define SIZEOF_DOUBLE__COMPLEX 16 | #define SIZEOF_LONG_DOUBLE__COMPLEX 32 | #define HAVE__BOOL 1 | #define HAVE_FLOAT__COMPLEX 1 | #define HAVE_DOUBLE__COMPLEX 1 | #define HAVE_LONG_DOUBLE__COMPLEX 1 | #define MPIR_REAL4_CTYPE float | #define MPIR_REAL8_CTYPE double | #define MPIR_REAL16_CTYPE long double | #define MPIR_INTEGER1_CTYPE char | #define MPIR_INTEGER2_CTYPE short | #define MPIR_INTEGER4_CTYPE int | #define MPIR_INTEGER8_CTYPE long | #define SIZEOF_F77_INTEGER 4 | #define SIZEOF_F77_REAL 4 | #define SIZEOF_F77_DOUBLE_PRECISION 8 | #define MPIR_FC_REAL_CTYPE float | #define MPIR_FC_DOUBLE_CTYPE double | #define HAVE_AINT_LARGER_THAN_FINT 1 | #define HAVE_AINT_DIFFERENT_THAN_FINT 1 | #define HAVE_FINT_IS_INT 1 | #define F77_TRUE_VALUE_SET 1 | #define F77_TRUE_VALUE 1 | #define F77_FALSE_VALUE 0 | #define SIZEOF_BOOL 1 | #define MPIR_CXX_BOOL_CTYPE _Bool | #define SIZEOF_COMPLEX 8 | #define SIZEOF_DOUBLECOMPLEX 16 | #define SIZEOF_LONGDOUBLECOMPLEX 32 | #define HAVE_CXX_COMPLEX 1 | #define MPIR_CXX_BOOL_VALUE 0x4c000133 | #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 | #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 | #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 | #define HAVE_ANY_INT64_T_ALIGNMENT 1 | #define HAVE_ANY_INT32_T_ALIGNMENT 1 | #define STDC_HEADERS 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_SETITIMER 1 | #define HAVE_ALARM 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_VSPRINTF 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_STRERROR_R 1 | #define HAVE_STRERROR_R 1 | #define HAVE_SNPRINTF 1 | #define HAVE_QSORT 1 | #define HAVE_VA_COPY 1 | #define HAVE_MACRO_VA_ARGS 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_STRDUP 1 | #define HAVE_MKSTEMP 1 | #define HAVE_FDOPEN 1 | #define NEEDS_FDOPEN_DECL 1 | #define HAVE_PUTENV 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_CLOCK_GETRES 1 | #define HAVE_MACH_ABSOLUTE_TIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define MPIR_AINT_MAX LONG_MAX | #define MPIU_Pint long | #define MPIU_PINT_FMT_DEC_SPEC "%ld" | #define MPIU_Upint unsigned long | #define MPIU_UPINT_FMT_DEC_SPEC "%lu" | #define MPIU_SIZE_T unsigned long | #define SIZEOF_MPIR_BSEND_DATA_T 96 | #define HAVE_PTHREAD_H 1 | #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK | #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX | #define HAVE_GETPID 1 | #define HAVE_SCHED_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_USLEEP 1 | #define HAVE_SLEEP 1 | #define HAVE_SELECT 1 | #define USE_SCHED_YIELD_FOR_YIELD 1 | #define HAVE_THREAD_POLICY_SET 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_SYS_UN_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_SOCKET 1 | #define HAVE_SETSOCKOPT 1 | #define HAVE_GETHOSTBYNAME 1 | #define USE_PMI_PORT 1 | #define HAVE_H_ADDR_LIST 1 | #define HAVE_GCC_ATTRIBUTE 1 | #define CH3_RANK_BITS 16 | #define HAVE_ASSERT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_UIO_H 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_TIME_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_NET_IF_H 1 | #define HAVE_INET_PTON 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_UUID_GENERATE 1 | #define HAVE_TIME 1 | #define HAVE_NET_IF_H 1 | #define HAVE_ASSERT_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_SYS_MMAN_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_SOCKIO_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_SYS_IPC_H 1 | #define HAVE_SYS_SHM_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_SIGNAL 1 | #define HAVE_MKSTEMP 1 | #define HAVE_RAND 1 | #define HAVE_SRAND 1 | #define HAVE_MMAP 1 | #define HAVE_MUNMAP 1 | #define USE_MMAP_SHM 1 | #define MPID_NEM_INLINE 1 | #define PREFETCH_CELL 1 | #define USE_FASTBOX 1 | #define HAVE_H_ADDR_LIST 1 | #define HAVE_STRUCT_IFCONF 1 | #define HAVE_STRUCT_IFREQ 1 | #define MPID_NEM_LOCAL_LMT_IMPL MPID_NEM_LOCAL_LMT_SHM_COPY | #define MPID_NEM_USE_LOCK_FREE_QUEUES 1 | #define SIZEOF_OPA_PTR_T 8 | #define MPIR_OFFSET_MAX LLONG_MAX | #define MPIR_COUNT_MAX LLONG_MAX | #define MPIR_Ucount unsigned long long | #define MPIF_STATUS_SIZE 5 | #define HAVE_STDIO_H 1 | /* end confdefs.h. */ | | | #if defined(HAVE_STDIO_H) || defined(STDC_HEADERS) | #include | #endif | | struct mpif_cmblk_t_ { int imember; }; | typedef struct mpif_cmblk_t_ mpif_cmblk_t; | | mpif_cmblk_t mpifcmbr = {0}; | extern mpif_cmblk_t MPIFCMB __attribute__ ((alias("mpifcmbr"))); | extern mpif_cmblk_t mpifcmb __attribute__ ((alias("mpifcmbr"))); | | extern int same_addrs1( void *ptr ); | extern int same_addrs2( void *ptr ); | | | int | main () | { | | int iaddr = 0; | #if defined(ATTR_ALIAS_DEBUG) | printf( "main: addr(mpifcmbr) = %p\n", &mpifcmbr ); | printf( "main: addr(mpifcmb) = %p\n", &mpifcmb ); | printf( "main: addr(MPIFCMB) = %p\n", &MPIFCMB ); | #endif | iaddr = same_addrs1( &mpifcmbr ) && same_addrs2( &mpifcmbr ); | FILE *file = fopen( "pac_conftestval", "w" ); | if (!file) return 1; | fprintf( file, "%d\n", iaddr ); | | ; | return 0; | } | configure:54373: result: no! link failure configure:55028: WARNING: The ch3 device did not set the maximum size of an error string, 512 being used. configure:55188: creating ./config.lt ## ------------------ ## ## Running config.lt. ## ## ------------------ ## config.lt:780: creating libtool configure:57264: checking if the C compiler accepts -Wl,-flat_namespace LDFLAGS(='-L/usr/X11/lib') does not contain '-Wl,-flat_namespace', appending configure:57294: gcc -o conftest -fPIC -O2 -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include -L/usr/X11/lib -Wl,-flat_namespace conftest.c -lpthread >&5 configure:57294: $? = 0 configure:57295: result: yes LDFLAGS(='-L/usr/X11/lib') does not contain '-Wl,-flat_namespace', appending WRAPPER_LDFLAGS(='-L/usr/X11/lib') does not contain '-Wl,-flat_namespace', appending configure:57343: checking if the F77 compiler accepts -Wl,-commons,use_dylibs LDFLAGS(='-L/usr/X11/lib -Wl,-flat_namespace') does not contain '-Wl,-commons,use_dylibs', appending configure:57372: gfortran -o conftest -O0 -fPIC -O2 -L/usr/X11/lib -Wl,-flat_namespace -Wl,-commons,use_dylibs conftest.f -lpthread >&5 configure:57372: $? = 0 configure:57373: result: yes WRAPPER_LDFLAGS(='-L/usr/X11/lib -Wl,-flat_namespace') does not contain '-Wl,-commons,use_dylibs', appending configure:57682: checking that generated files are newer than configure configure:57688: result: done configure:57892: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by MPICH config.status 3.2, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on Hoffman.local config.status:2064: creating src/binding/fortran/use_mpi/mpif90model.h config.status:2064: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h config.status:2064: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c config.status:2064: creating Makefile config.status:2064: creating examples/Makefile config.status:2064: creating test/Makefile config.status:2064: creating test/commands/Makefile config.status:2064: creating src/include/mpichinfo.h config.status:2064: creating mpich-doxygen config.status:2064: creating src/include/glue_romio.h config.status:2064: creating src/binding/cxx/mpicxx.h config.status:2064: creating src/binding/fortran/mpif_h/mpif.h config.status:2064: creating src/binding/fortran/mpif_h/setbotf.f config.status:2064: creating src/binding/fortran/mpif_h/setbot.c config.status:2064: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status:2064: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status:2064: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status:2064: creating src/binding/fortran/use_mpi_f08/mpi_f08_compile_constants.f90 config.status:2064: creating src/binding/fortran/use_mpi_f08/mpi_c_interface_types.f90 config.status:2064: creating src/packaging/pkgconfig/mpich.pc config.status:2064: creating src/packaging/envmods/mpich.module config.status:2172: WARNING: 'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting config.status:2064: creating src/env/mpixxx_opts.conf config.status:2064: creating src/env/mpicc.sh config.status:2064: creating src/env/mpicc.bash config.status:2064: creating src/env/mpicxx.sh config.status:2064: creating src/env/mpicxx.bash config.status:2064: creating src/env/mpif77.sh config.status:2064: creating src/env/mpif77.bash config.status:2064: creating src/env/mpifort.sh config.status:2064: creating src/env/mpifort.bash config.status:2064: creating src/env/parkill config.status:2064: creating src/util/dbg/getfuncstack config.status:2064: creating src/util/timers/mpiu_timer.h config.status:2064: creating src/include/mpi.h config.status:2064: creating doc/design/Makefile config.status:2064: creating doc/installguide/Makefile config.status:2064: creating doc/logging/Makefile config.status:2064: creating doc/refman/Makefile config.status:2064: creating doc/userguide/Makefile config.status:2064: creating test/commands/cmdtests config.status:2064: creating src/include/mpichconf.h config.status:2298: executing depfiles commands config.status:2298: executing libtool commands config.status:2298: executing default-1 commands config.status:2298: executing default-2 commands config.status:2298: executing default-3 commands config.status:2298: executing default-4 commands config.status:2298: executing default-5 commands configure:60983: === configuring in test/mpi (/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/test/mpi) configure:61046: running /bin/sh ./configure --disable-option-checking '--prefix=/Applications/Amber17/amber16' '--enable-f77' '--enable-fc' '--enable-cxx' '--enable-shared' '--enable-sharedlibs=osx-gcc' 'LDFLAGS=-L/usr/X11/lib' 'F77=gfortran' 'FFLAGS=-O0 -fPIC' 'FC=gfortran' 'FCFLAGS=-O0 -fPIC' 'CC=gcc' 'CFLAGS=-fPIC' 'CXX=g++' --cache-file=/dev/null --srcdir=. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-apple-darwin16.7.0 ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_c_int16_t=yes ac_cv_c_int32_t=yes ac_cv_c_int64_t=yes ac_cv_c_int8_t=yes ac_cv_c_restrict=__restrict ac_cv_c_uint16_t=yes ac_cv_c_uint32_t=yes ac_cv_c_uint64_t=yes ac_cv_c_uint8_t=yes ac_cv_c_volatile=yes ac_cv_cxx_bool=yes ac_cv_cxx_compiler_gnu=yes ac_cv_cxx_exceptions=yes ac_cv_cxx_namespace_std=yes ac_cv_cxx_namespaces=yes ac_cv_env_AR_FLAGS_set= ac_cv_env_AR_FLAGS_value= ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=gcc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-fPIC ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=g++ ac_cv_env_F77_set=set ac_cv_env_F77_value=gfortran ac_cv_env_FCFLAGS_set=set ac_cv_env_FCFLAGS_value='-O0 -fPIC' ac_cv_env_FC_set=set ac_cv_env_FC_value=gfortran ac_cv_env_FFLAGS_set=set ac_cv_env_FFLAGS_value='-O0 -fPIC' ac_cv_env_GCOV_set= ac_cv_env_GCOV_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value=-L/usr/X11/lib ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_MPICHLIB_CFLAGS_set= ac_cv_env_MPICHLIB_CFLAGS_value= ac_cv_env_MPICHLIB_CPPFLAGS_set= ac_cv_env_MPICHLIB_CPPFLAGS_value= ac_cv_env_MPICHLIB_CXXFLAGS_set= ac_cv_env_MPICHLIB_CXXFLAGS_value= ac_cv_env_MPICHLIB_FCFLAGS_set= ac_cv_env_MPICHLIB_FCFLAGS_value= ac_cv_env_MPICHLIB_FFLAGS_set= ac_cv_env_MPICHLIB_FFLAGS_value= ac_cv_env_MPICXXLIBNAME_set= ac_cv_env_MPICXXLIBNAME_value= ac_cv_env_MPIFCLIBNAME_set= ac_cv_env_MPIFCLIBNAME_value= ac_cv_env_MPILIBNAME_set= ac_cv_env_MPILIBNAME_value= ac_cv_env_MPLLIBNAME_set= ac_cv_env_MPLLIBNAME_value= ac_cv_env_OPALIBNAME_set= ac_cv_env_OPALIBNAME_value= ac_cv_env_PAMILIBNAME_set= ac_cv_env_PAMILIBNAME_value= ac_cv_env_PMPILIBNAME_set= ac_cv_env_PMPILIBNAME_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_f77_libs=' -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. -lgfortran -lquadmath -lm' ac_cv_fc_compiler_gnu=yes ac_cv_func_CFUUIDCreate=no ac_cv_func_alarm=yes ac_cv_func_alloca_works=yes ac_cv_func_bindprocessor=no ac_cv_func_clock_getres=yes ac_cv_func_clock_gettime=yes ac_cv_func_fdopen=yes ac_cv_func_gethostbyname=yes ac_cv_func_gethostname=yes ac_cv_func_gethrtime=no ac_cv_func_getpid=yes ac_cv_func_gettimeofday=yes ac_cv_func_inet_pton=yes ac_cv_func_mach_absolute_time=yes ac_cv_func_mkstemp=yes ac_cv_func_mmap=yes ac_cv_func_munmap=yes ac_cv_func_pthread_cleanup_push=no ac_cv_func_pthread_key_create=yes ac_cv_func_pthread_yield=no ac_cv_func_putenv=yes ac_cv_func_qsort=yes ac_cv_func_rand=yes ac_cv_func_sched_getaffinity=no ac_cv_func_sched_setaffinity=no ac_cv_func_sched_yield=yes ac_cv_func_select=yes ac_cv_func_setitimer=yes ac_cv_func_setsockopt=yes ac_cv_func_signal=yes ac_cv_func_sleep=yes ac_cv_func_snprintf=yes ac_cv_func_socket=yes ac_cv_func_srand=yes ac_cv_func_strdup=yes ac_cv_func_strerror=yes ac_cv_func_strerror_r=yes ac_cv_func_strerror_r_char_p=no ac_cv_func_strncasecmp=yes ac_cv_func_thread_policy_set=yes ac_cv_func_time=yes ac_cv_func_usleep=yes ac_cv_func_uuid_generate=yes ac_cv_func_vsnprintf=yes ac_cv_func_vsprintf=yes ac_cv_func_yield=no ac_cv_have_decl_strerror_r=yes ac_cv_header_arpa_inet_h=yes ac_cv_header_assert_h=yes ac_cv_header_complex=yes ac_cv_header_complex_h=yes ac_cv_header_ctype_h=yes ac_cv_header_dlfcn_h=yes ac_cv_header_endian_h=no ac_cv_header_errno_h=yes ac_cv_header_hcoll_api_hcoll_api_h=no ac_cv_header_inttypes_h=yes ac_cv_header_knem_io_h=no ac_cv_header_limits_h=yes ac_cv_header_memory_h=yes ac_cv_header_net_if_h=yes ac_cv_header_netdb_h=yes ac_cv_header_netinet_in_h=yes ac_cv_header_netinet_tcp_h=yes ac_cv_header_pthread_h=yes ac_cv_header_sched_h=yes ac_cv_header_signal_h=yes ac_cv_header_stdarg_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_bitypes_h=no ac_cv_header_sys_ioctl_h=yes ac_cv_header_sys_ipc_h=yes ac_cv_header_sys_mman_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_select_h=yes ac_cv_header_sys_shm_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_sockio_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_uio_h=yes ac_cv_header_sys_un_h=yes ac_cv_header_time_h=yes ac_cv_header_unistd_h=yes ac_cv_header_uuid_uuid_h=yes ac_cv_host=x86_64-apple-darwin16.7.0 ac_cv_lib_hcoll_hcoll_init=no ac_cv_lib_pthread_pthread_key_create=yes ac_cv_objext=o ac_cv_path_BASH_SHELL=/bin/bash ac_cv_path_DOCTEXT=false ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_NM_G='/opt/local/bin/nm -g' ac_cv_path_PERL=/usr/bin/perl ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/bin/dd ac_cv_prog_AR=ar ac_cv_prog_AWK=awk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_GCOV=gcov ac_cv_prog_KILLALL=killall ac_cv_prog_MAKE=make ac_cv_prog_RANLIB=ranlib ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_DSYMUTIL=dsymutil ac_cv_prog_ac_ct_LIPO=lipo ac_cv_prog_ac_ct_NMEDIT=nmedit ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_OTOOL=otool ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_f77_v=-v ac_cv_prog_fc_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_clock_getres='none required' ac_cv_search_clock_gettime='none required' ac_cv_search_gethostbyname='none required' ac_cv_search_socket='none required' ac_cv_sizeof_Complex=8 ac_cv_sizeof_DoubleComplex=16 ac_cv_sizeof_LongDoubleComplex=32 ac_cv_sizeof_MPIR_Bsend_data_t=96 ac_cv_sizeof_MPI_Offset=8 ac_cv_sizeof_OPA_ptr_t=8 ac_cv_sizeof__Bool=1 ac_cv_sizeof_bool=1 ac_cv_sizeof_char=1 ac_cv_sizeof_double=8 ac_cv_sizeof_double__Complex=16 ac_cv_sizeof_double_int=16 ac_cv_sizeof_float=4 ac_cv_sizeof_float__Complex=8 ac_cv_sizeof_float_int=8 ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_long_double=16 ac_cv_sizeof_long_double__Complex=32 ac_cv_sizeof_long_double_int=32 ac_cv_sizeof_long_int=16 ac_cv_sizeof_long_long=8 ac_cv_sizeof_short=2 ac_cv_sizeof_short_int=8 ac_cv_sizeof_two_int=8 ac_cv_sizeof_unsigned_char=1 ac_cv_sizeof_unsigned_int=4 ac_cv_sizeof_unsigned_long=8 ac_cv_sizeof_unsigned_long_long=8 ac_cv_sizeof_unsigned_short=2 ac_cv_sizeof_void_p=8 ac_cv_sizeof_wchar_t=4 ac_cv_tls=none ac_cv_type__Bool=yes ac_cv_type_double__Complex=yes ac_cv_type_float__Complex=yes ac_cv_type_long_double__Complex=yes ac_cv_type_pid_t=yes ac_cv_type_size_t=yes ac_cv_working_alloca_h=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes lac_cv_header_net_if_h=yes lt_cv_apple_cc_single_mod=yes lt_cv_ar_at_file=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_exported_symbols_list=yes lt_cv_ld_force_load=yes lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/opt/local/bin/ld lt_cv_path_LDCXX=/opt/local/bin/ld lt_cv_path_NM='/opt/local/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic='-fno-common -DPIC' lt_cv_prog_compiler_pic_CXX='-fno-common -DPIC' lt_cv_prog_compiler_pic_F77=-fno-common lt_cv_prog_compiler_pic_FC=-fno-common lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_F77=no lt_cv_prog_compiler_static_works_FC=no lt_cv_prog_gnu_ld=no lt_cv_prog_gnu_ldcxx=no lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=196608 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' pac_cv_attr_weak=yes pac_cv_attr_weak_alias=no pac_cv_attr_weak_import=yes pac_cv_c_double_alignment_exception=no pac_cv_c_double_pos_align=no pac_cv_c_fp_align_nr=16 pac_cv_c_llint_pos_align=no pac_cv_c_max_double_fp_align=eight pac_cv_c_max_fp_align=sixteen pac_cv_c_max_integer_align=eight pac_cv_c_max_longdouble_fp_align=sixteen pac_cv_c_struct_align_nr=8 pac_cv_cc_has___func__=yes pac_cv_cxx_builds_exe=yes pac_cv_cxx_compiles_string=yes pac_cv_cxx_has_iostream=yes pac_cv_cxx_has_math=no pac_cv_f77_accepts_F=yes pac_cv_f77_flibs_valid=unknown pac_cv_f77_sizeof_double_precision=8 pac_cv_f77_sizeof_integer=4 pac_cv_f77_sizeof_real=4 pac_cv_fc_accepts_F90=yes pac_cv_fc_and_f77=yes pac_cv_fc_module_case=lower pac_cv_fc_module_ext=mod pac_cv_fc_module_incflag=-I pac_cv_fc_module_outflag=-J pac_cv_fort90_real8=yes pac_cv_fort_integer16=yes pac_cv_fort_integer1=yes pac_cv_fort_integer2=yes pac_cv_fort_integer4=yes pac_cv_fort_integer8=yes pac_cv_fort_real16=yes pac_cv_fort_real4=yes pac_cv_fort_real8=yes pac_cv_func_decl_fdopen=yes pac_cv_func_decl_gethostname=no pac_cv_func_decl_mkstemp=no pac_cv_func_decl_pthread_mutexattr_settype=no pac_cv_func_decl_putenv=no pac_cv_func_decl_snprintf=no pac_cv_func_decl_strdup=no pac_cv_func_decl_strerror_r=no pac_cv_func_decl_usleep=no pac_cv_func_decl_vsnprintf=no pac_cv_func_pthread_cleanup_push=no pac_cv_func_va_copy=yes pac_cv_gnu_attr_format=yes pac_cv_gnu_attr_pure=yes pac_cv_has_pthread_mutex_errorcheck=yes pac_cv_has_pthread_mutex_errorcheck_np=no pac_cv_have__func__=yes pac_cv_have__function__=yes pac_cv_have_cap__func__=no pac_cv_have_haddr_list=yes pac_cv_have_knem_io_h=no pac_cv_have_long_double=yes pac_cv_have_long_long=yes pac_cv_have_socklen_t=yes pac_cv_have_struct_ifconf=yes pac_cv_have_struct_ifreq=yes pac_cv_have_thread_affinity_policy=no pac_cv_int32_t_alignment=no pac_cv_int64_t_alignment=no pac_cv_mkdir_p=yes pac_cv_my_conf_dir=/Applications/Amber17/amber16/AmberTools/src/mpich-3.2 pac_cv_pointers_have_int_alignment=yes pac_cv_posix_clock_realtime=yes pac_cv_prog_c_unaligned_doubles=yes pac_cv_prog_c_weak_symbols=no pac_cv_prog_f77_and_c_stdio_libs=none pac_cv_prog_f77_exclaim_comments=yes pac_cv_prog_f77_has_incdir=-I pac_cv_prog_f77_library_dir_flag=-L pac_cv_prog_f77_mismatched_args=yes pac_cv_prog_f77_mismatched_args_parm= pac_cv_prog_f77_name_mangle='lower uscore' pac_cv_prog_f77_true_false_value='1 0' pac_cv_prog_fc_and_c_stdio_libs=none pac_cv_prog_fc_cross=no pac_cv_prog_fc_int_kind_16=8 pac_cv_prog_fc_int_kind_8=4 pac_cv_prog_fc_works=yes pac_cv_prog_make_allows_comments=yes pac_cv_prog_make_found_clock_skew=no pac_cv_prog_make_include=yes pac_cv_prog_make_set_cflags=yes pac_cv_prog_make_vpath=VPATH pac_cv_sizeof_mpi_status=20 pac_cv_struct_timespec_defined=yes pac_cv_wl_commons_use_dylibs_works=yes pac_cv_wl_flat_namespace_works=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ABIVERSION='13:0:1' ABIVERSIONFLAGS='-version-info $(ABIVERSION)' ACLOCAL='${SHELL} /Applications/Amber17/amber16/AmberTools/src/mpich-3.2/confdb/missing aclocal-1.15' ADDRESS_KIND='8' ALLOCA='' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='0' AM_V='$(V)' AR='ar' AR_FLAGS='Scr' AS='as' ASSERT_LEVEL='' AUTOCONF='${SHELL} /Applications/Amber17/amber16/AmberTools/src/mpich-3.2/confdb/missing autoconf' AUTOHEADER='${SHELL} /Applications/Amber17/amber16/AmberTools/src/mpich-3.2/confdb/missing autoheader' AUTOMAKE='${SHELL} /Applications/Amber17/amber16/AmberTools/src/mpich-3.2/confdb/missing automake-1.15' AWK='awk' BASH_SHELL='/bin/bash' BGQ_INSTALL_DIR='' BSEND_OVERHEAD='96' BUILD_BASH_SCRIPTS_FALSE='#' BUILD_BASH_SCRIPTS_TRUE='' BUILD_CH3_FALSE='#' BUILD_CH3_NEMESIS_FALSE='#' BUILD_CH3_NEMESIS_TRUE='' BUILD_CH3_SOCK_FALSE='' BUILD_CH3_SOCK_TRUE='#' BUILD_CH3_TRUE='' BUILD_CH3_UTIL_FTB_FALSE='' BUILD_CH3_UTIL_FTB_TRUE='#' BUILD_CH3_UTIL_SOCK_FALSE='' BUILD_CH3_UTIL_SOCK_TRUE='#' BUILD_COVERAGE_FALSE='' BUILD_COVERAGE_TRUE='#' BUILD_CXX_BINDING_FALSE='#' BUILD_CXX_BINDING_TRUE='' BUILD_DEBUGGER_DLL_FALSE='' BUILD_DEBUGGER_DLL_TRUE='#' BUILD_F08_BINDING_FALSE='' BUILD_F08_BINDING_TRUE='#' BUILD_F77_BINDING_FALSE='#' BUILD_F77_BINDING_TRUE='' BUILD_FC_BINDING_FALSE='#' BUILD_FC_BINDING_TRUE='' BUILD_HCOLL_FALSE='' BUILD_HCOLL_TRUE='#' BUILD_LOGGING_RLOG_FALSE='' BUILD_LOGGING_RLOG_TRUE='#' BUILD_MPID_COMMON_DATATYPE_FALSE='#' BUILD_MPID_COMMON_DATATYPE_TRUE='' BUILD_MPID_COMMON_SCHED_FALSE='#' BUILD_MPID_COMMON_SCHED_TRUE='' BUILD_MPID_COMMON_SOCK_FALSE='' BUILD_MPID_COMMON_SOCK_POLL_FALSE='' BUILD_MPID_COMMON_SOCK_POLL_TRUE='#' BUILD_MPID_COMMON_SOCK_TRUE='#' BUILD_MPID_COMMON_THREAD_FALSE='#' BUILD_MPID_COMMON_THREAD_TRUE='' BUILD_NAMEPUB_FILE_FALSE='' BUILD_NAMEPUB_FILE_TRUE='#' BUILD_NAMEPUB_PMI_FALSE='#' BUILD_NAMEPUB_PMI_TRUE='' BUILD_NEMESIS_NETMOD_LLC_FALSE='' BUILD_NEMESIS_NETMOD_LLC_TRUE='#' BUILD_NEMESIS_NETMOD_MXM_FALSE='' BUILD_NEMESIS_NETMOD_MXM_TRUE='#' BUILD_NEMESIS_NETMOD_OFI_FALSE='' BUILD_NEMESIS_NETMOD_OFI_TRUE='#' BUILD_NEMESIS_NETMOD_PORTALS4_FALSE='' BUILD_NEMESIS_NETMOD_PORTALS4_TRUE='#' BUILD_NEMESIS_NETMOD_TCP_FALSE='#' BUILD_NEMESIS_NETMOD_TCP_TRUE='' BUILD_PAMID_FALSE='' BUILD_PAMID_TRUE='#' BUILD_PMI_PMI2_FALSE='' BUILD_PMI_PMI2_POE_FALSE='' BUILD_PMI_PMI2_POE_TRUE='#' BUILD_PMI_PMI2_SIMPLE_FALSE='' BUILD_PMI_PMI2_SIMPLE_TRUE='#' BUILD_PMI_PMI2_TRUE='#' BUILD_PMI_SIMPLE_FALSE='#' BUILD_PMI_SIMPLE_TRUE='' BUILD_PMI_SLURM_FALSE='' BUILD_PMI_SLURM_TRUE='#' BUILD_PM_GFORKER_FALSE='' BUILD_PM_GFORKER_TRUE='#' BUILD_PM_HYDRA_FALSE='#' BUILD_PM_HYDRA_TRUE='' BUILD_PM_REMSHELL_FALSE='' BUILD_PM_REMSHELL_TRUE='#' BUILD_PM_UTIL_FALSE='' BUILD_PM_UTIL_TRUE='#' BUILD_PROFILING_LIB_FALSE='#' BUILD_PROFILING_LIB_TRUE='' BUILD_ROMIO_FALSE='#' BUILD_ROMIO_TRUE='' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-fPIC -O2' CMB_1INT_ALIGNMENT='' CMB_STATUS_ALIGNMENT='' CONFIGURE_ARGS_CLEAN='--prefix=/Applications/Amber17/amber16 --enable-f77 --enable-fc --enable-cxx --enable-shared --enable-sharedlibs=osx-gcc LDFLAGS=-L/usr/X11/lib F77=gfortran FFLAGS=-O0 -fPIC FC=gfortran FCFLAGS=-O0 -fPIC CC=gcc CFLAGS=-fPIC CXX=g++' CONFIGURE_ARGUMENTS=' '\''--prefix=/Applications/Amber17/amber16'\'' '\''--enable-f77'\'' '\''--enable-fc'\'' '\''--enable-cxx'\'' '\''--enable-shared'\'' '\''--enable-sharedlibs=osx-gcc'\'' '\''LDFLAGS=-L/usr/X11/lib'\'' '\''F77=gfortran'\'' '\''FFLAGS=-O0 -fPIC'\'' '\''FC=gfortran'\'' '\''FCFLAGS=-O0 -fPIC'\'' '\''CC=gcc'\'' '\''CFLAGS=-fPIC'\'' '\''CXX=g++'\''' COUNT_KIND='8' CPP='gcc -E' CPPFLAGS=' -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl/include -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src -D_REENTRANT -I/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpi/romio/include' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -O2' CYGPATH_W='echo' C_LINKPATH_SHL='' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DEVICE='ch3:nemesis' DISABLE_TAG_SUPPORT='#define NO_TAGS_WITH_MODIFIERS 1' DLLIMPORT='' DLLTOOL='false' DOCTEXT='false' DSYMUTIL='dsymutil' DUMPBIN='' ECHO_C='\c' ECHO_N='' ECHO_T='' EGREP='/usr/bin/grep -E' EXEEXT='' F08_2INT='' F08_AINT='' F08_BYTE='' F08_CHAR='' F08_COMPLEX16='' F08_COMPLEX32='' F08_COMPLEX8='' F08_COUNT='' F08_CXX_BOOL='' F08_CXX_DOUBLE_COMPLEX='' F08_CXX_FLOAT_COMPLEX='' F08_CXX_LONG_DOUBLE_COMPLEX='' F08_C_AINT='' F08_C_BOOL='' F08_C_COMPLEX='' F08_C_COUNT='' F08_C_DOUBLE_COMPLEX='' F08_C_FLOAT_COMPLEX='' F08_C_LONG_DOUBLE_COMPLEX='' F08_C_OFFSET='' F08_DOUBLE='' F08_DOUBLE_INT='' F08_FLOAT='' F08_FLOAT_INT='' F08_INT16_T='' F08_INT32_T='' F08_INT64_T='' F08_INT8_T='' F08_INT='' F08_INTEGER16='' F08_INTEGER1='' F08_INTEGER2='' F08_INTEGER4='' F08_INTEGER8='' F08_LB='' F08_LONG='' F08_LONG_DOUBLE='' F08_LONG_DOUBLE_INT='' F08_LONG_INT='' F08_LONG_LONG='' F08_LONG_LONG_INT='' F08_OFFSET='' F08_PACKED='' F08_REAL16='' F08_REAL4='' F08_REAL8='' F08_SHORT='' F08_SHORT_INT='' F08_SIGNED_CHAR='' F08_UB='' F08_UINT16_T='' F08_UINT32_T='' F08_UINT64_T='' F08_UINT8_T='' F08_UNSIGNED='' F08_UNSIGNED_CHAR='' F08_UNSIGNED_INT='' F08_UNSIGNED_LONG='' F08_UNSIGNED_LONG_LONG='' F08_UNSIGNED_SHORT='' F08_WCHAR='' F77='gfortran' F77CPP='' F77_COMPLEX16='1275072554' F77_COMPLEX32='1275076652' F77_COMPLEX8='1275070504' F77_INCDIR='-I' F77_INTEGER16='MPI_DATATYPE_NULL' F77_INTEGER1='1275068717' F77_INTEGER2='1275068975' F77_INTEGER4='1275069488' F77_INTEGER8='1275070513' F77_LIBDIR_LEADER='-L' F77_NAME_MANGLE='F77_NAME_LOWER_USCORE' F77_OTHER_LIBS='' F77_REAL16='1275072555' F77_REAL4='1275069479' F77_REAL8='1275070505' FC='gfortran' FCCPP='' FCEXT='f90' FCFLAGS='-O0 -fPIC -O2' FCINC='-I' FCINCFLAG='-I' FCMODEXT='mod' FCMODINCFLAG='-I' FCMODINCSPEC='' FCMODOUTFLAG='-J' FC_ALL_INTEGER_MODELS=' 2 , 1, 4 , 2, 9 , 4, 18 , 8,' FC_DOUBLE_MODEL=' 15 , 307' FC_INTEGER_MODEL=' 9' FC_INTEGER_MODEL_MAP=' { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 },' FC_OTHER_LIBS='' FC_REAL_MODEL=' 6 , 37' FC_WORK_FILES_ARG='' FFLAGS='-O0 -fPIC -O2' FGREP='/usr/bin/grep -F' FILE='' FLIBS=' -L/usr/X11/lib -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin16/5.4.0/../../.. -lgfortran -lquadmath -lm' FORTRAN_BINDING='1' FORTRAN_MPI_OFFSET='integer*8' GCOV='gcov' GNUCXX_MINORVERSION='4' GNUCXX_VERSION='5' GREP='/usr/bin/grep' HAVE_CXX_EXCEPTIONS='1' HAVE_ERROR_CHECKING='1' HAVE_ROMIO='#include "mpio.h"' INCLUDE_MPICXX_H='#include "mpicxx.h"' INSTALL_DATA='${INSTALL} -m 644' INSTALL_MPIF77_FALSE='' INSTALL_MPIF77_TRUE='#' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' INTEGER_KIND='4' INTERLIB_DEPS='yes' KILLALL='killall' LD='/opt/local/bin/ld' LDFLAGS='-L/usr/X11/lib -Wl,-flat_namespace' LIBOBJS='' LIBS='-lpthread ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='lipo' LN_S='ln -s' LPMPILIBNAME='-lpmpi' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAINT='' MAINTAINER_MODE_FALSE='#' MAINTAINER_MODE_TRUE='' MAKE='make' MAKEINFO='${SHELL} /Applications/Amber17/amber16/AmberTools/src/mpich-3.2/confdb/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='mkdir -p' MPIBASEMODNAME='mpi_base' MPICC_NAME='mpicc' MPICHLIB_CFLAGS='' MPICHLIB_CPPFLAGS='' MPICHLIB_CXXFLAGS='' MPICHLIB_FCFLAGS='' MPICHLIB_FFLAGS='' MPICH_MPICC_CFLAGS='' MPICH_MPICC_CPPFLAGS='' MPICH_MPICC_LDFLAGS='' MPICH_MPICC_LIBS='' MPICH_MPICXX_CPPFLAGS='' MPICH_MPICXX_CXXFLAGS='' MPICH_MPICXX_LDFLAGS='' MPICH_MPICXX_LIBS='' MPICH_MPIF77_CPPFLAGS='' MPICH_MPIF77_FFLAGS='' MPICH_MPIF77_LDFLAGS='' MPICH_MPIF77_LIBS='' MPICH_MPIFORT_CPPFLAGS='' MPICH_MPIFORT_FCFLAGS='' MPICH_MPIFORT_LDFLAGS='' MPICH_MPIFORT_LIBS='' MPICH_NUMVERSION='30200300' MPICH_RELEASE_DATE='Wed Nov 11 22:06:48 CST 2015' MPICH_TIMER_KIND='MPIU_CLOCK_GETTIME' MPICH_TIMER_TYPE='struct timespec' MPICH_VERSION='3.2' MPICONSTMODNAME='mpi_constants' MPICPP_NAME='mpic++' MPICXXLIBNAME='mpicxx' MPICXX_NAME='mpicxx' MPIF77_NAME='mpif77' MPIF90_NAME='mpif90' MPIFCLIBNAME='mpifort' MPIFORT_NAME='mpifort' MPIFPMPI=',PMPI_WTIME,PMPI_WTICK' MPILIBNAME='mpi' MPIMODNAME='mpi' MPIR_CXX_BOOL='0x4c000133' MPIR_CXX_COMPLEX='0x4c000834' MPIR_CXX_DOUBLE_COMPLEX='0x4c001035' MPIR_CXX_LONG_DOUBLE_COMPLEX='0x4c002036' MPISIZEOFMODNAME='mpi_sizeofs' MPIU_DLL_SPEC_DEF='#define MPIU_DLL_SPEC' MPIU_PINT='long' MPI_2COMPLEX='1275072548' MPI_2DOUBLE_COMPLEX='1275076645' MPI_2DOUBLE_PRECISION='1275072547' MPI_2INT='0x4c000816' MPI_2INTEGER='1275070496' MPI_2REAL='1275070497' MPI_AINT='long' MPI_AINT_DATATYPE='0x4c000843' MPI_AINT_FMT_DEC_SPEC='%ld' MPI_AINT_FMT_HEX_SPEC='%lx' MPI_BYTE='0x4c00010d' MPI_CHAR='0x4c000101' MPI_CHARACTER='1275068698' MPI_COMPLEX16='0x4c00102a' MPI_COMPLEX32='0x4c00202c' MPI_COMPLEX8='0x4c000828' MPI_COMPLEX='1275070494' MPI_COUNT='long long' MPI_COUNT_DATATYPE='0x4c000845' MPI_C_BOOL='0x4c00013f' MPI_C_DOUBLE_COMPLEX='0x4c001041' MPI_C_FLOAT_COMPLEX='0x4c000840' MPI_C_INTERFACE_CDESC_NAME='mpi_c_interface_cdesc' MPI_C_INTERFACE_GLUE_NAME='mpi_c_interface_glue' MPI_C_INTERFACE_NAME='mpi_c_interface' MPI_C_INTERFACE_NOBUF_NAME='mpi_c_interface_nobuf' MPI_C_INTERFACE_TYPES_NAME='mpi_c_interface_types' MPI_C_LONG_DOUBLE_COMPLEX='0x4c002042' MPI_DOUBLE='0x4c00080b' MPI_DOUBLE_COMPLEX='1275072546' MPI_DOUBLE_INT='0x8c000001' MPI_DOUBLE_PRECISION='1275070495' MPI_F08_CALLBACKS_NAME='mpi_f08_callbacks' MPI_F08_COMPILE_CONSTANTS_NAME='mpi_f08_compile_constants' MPI_F08_LINK_CONSTANTS_NAME='mpi_f08_link_constants' MPI_F08_NAME='mpi_f08' MPI_F08_TYPES_NAME='mpi_f08_types' MPI_F77_2INT='1275070486' MPI_F77_AINT='1275070531' MPI_F77_BYTE='1275068685' MPI_F77_CHAR='1275068673' MPI_F77_COUNT='1275070533' MPI_F77_CXX_BOOL='1275068723' MPI_F77_CXX_DOUBLE_COMPLEX='1275072565' MPI_F77_CXX_FLOAT_COMPLEX='1275070516' MPI_F77_CXX_LONG_DOUBLE_COMPLEX='1275076662' MPI_F77_C_BOOL='1275068735' MPI_F77_C_COMPLEX='1275070528' MPI_F77_C_DOUBLE_COMPLEX='1275072577' MPI_F77_C_FLOAT_COMPLEX='1275070528' MPI_F77_C_LONG_DOUBLE_COMPLEX='1275076674' MPI_F77_DOUBLE='1275070475' MPI_F77_DOUBLE_INT='-1946157055' MPI_F77_FLOAT='1275069450' MPI_F77_FLOAT_INT='-1946157056' MPI_F77_INT16_T='1275068984' MPI_F77_INT32_T='1275069497' MPI_F77_INT64_T='1275070522' MPI_F77_INT8_T='1275068727' MPI_F77_INT='1275069445' MPI_F77_LB='1275068432' MPI_F77_LONG='1275070471' MPI_F77_LONG_DOUBLE='1275072524' MPI_F77_LONG_DOUBLE_INT='-1946157052' MPI_F77_LONG_INT='-1946157054' MPI_F77_LONG_LONG='1275070473' MPI_F77_LONG_LONG_INT='1275070473' MPI_F77_OFFSET='1275070532' MPI_F77_PACKED='1275068687' MPI_F77_SHORT='1275068931' MPI_F77_SHORT_INT='-1946157053' MPI_F77_SIGNED_CHAR='1275068696' MPI_F77_UB='1275068433' MPI_F77_UINT16_T='1275068988' MPI_F77_UINT32_T='1275069501' MPI_F77_UINT64_T='1275070526' MPI_F77_UINT8_T='1275068731' MPI_F77_UNSIGNED='1275069446' MPI_F77_UNSIGNED_CHAR='1275068674' MPI_F77_UNSIGNED_LONG='1275070472' MPI_F77_UNSIGNED_LONG_LONG='1275070489' MPI_F77_UNSIGNED_SHORT='1275068932' MPI_F77_WCHAR='1275069454' MPI_FINT='int' MPI_FLOAT='0x4c00040a' MPI_FLOAT_INT='0x8c000000' MPI_INT16_T='0x4c000238' MPI_INT32_T='0x4c000439' MPI_INT64_T='0x4c00083a' MPI_INT8_T='0x4c000137' MPI_INT='0x4c000405' MPI_INTEGER16='MPI_DATATYPE_NULL' MPI_INTEGER1='0x4c00012d' MPI_INTEGER2='0x4c00022f' MPI_INTEGER4='0x4c000430' MPI_INTEGER8='0x4c000831' MPI_INTEGER='1275069467' MPI_LB='0x4c000010' MPI_LOGICAL='1275069469' MPI_LONG='0x4c000807' MPI_LONG_DOUBLE='0x4c00100c' MPI_LONG_DOUBLE_INT='0x8c000004' MPI_LONG_INT='0x8c000002' MPI_LONG_LONG='0x4c000809' MPI_MAX_ERROR_STRING='512' MPI_MAX_LIBRARY_VERSION_STRING='8192' MPI_MAX_PROCESSOR_NAME='128' MPI_OFFSET='long long' MPI_OFFSET_DATATYPE='0x4c000844' MPI_OFFSET_TYPEDEF='typedef long long MPI_Offset;' MPI_PACKED='0x4c00010f' MPI_REAL16='0x4c00102b' MPI_REAL4='0x4c000427' MPI_REAL8='0x4c000829' MPI_REAL='1275069468' MPI_SHORT='0x4c000203' MPI_SHORT_INT='0x8c000003' MPI_SIGNED_CHAR='0x4c000118' MPI_STATUS_SIZE='5' MPI_UB='0x4c000011' MPI_UINT16_T='0x4c00023c' MPI_UINT32_T='0x4c00043d' MPI_UINT64_T='0x4c00083e' MPI_UINT8_T='0x4c00013b' MPI_UNSIGNED_CHAR='0x4c000102' MPI_UNSIGNED_INT='0x4c000406' MPI_UNSIGNED_LONG='0x4c000808' MPI_UNSIGNED_LONG_LONG='0x4c000819' MPI_UNSIGNED_SHORT='0x4c000204' MPI_WCHAR='0x4c00040e' MPLLIBNAME='mpl' NM='/opt/local/bin/nm -B' NMEDIT='nmedit' OBJDUMP='objdump' OBJEXT='o' OFFSET_KIND='8' OPALIBNAME='opa' OTOOL64=':' OTOOL='otool' PACKAGE='mpich' PACKAGE_BUGREPORT='discuss@mpich.org' PACKAGE_NAME='MPICH' PACKAGE_STRING='MPICH 3.2' PACKAGE_TARNAME='mpich' PACKAGE_URL='http://www.mpich.org/' PACKAGE_VERSION='3.2' PAMILIBNAME='pami' PAPI_INCLUDE='' PATH_SEPARATOR=':' PERL='/usr/bin/perl' PMPILIBNAME='pmpi' PMPI_F08_NAME='pmpi_f08' PRIMARY_PM_GFORKER_FALSE='' PRIMARY_PM_GFORKER_TRUE='#' PRIMARY_PM_REMSHELL_FALSE='' PRIMARY_PM_REMSHELL_TRUE='#' QUEUE_BINARY_SEARCH_SUPPORT_FALSE='' QUEUE_BINARY_SEARCH_SUPPORT_TRUE='#' RANLIB='ranlib' REQD='' REQI1='' REQI2='' REQI8='' RSH='' SED='/usr/bin/sed' SET_CFLAGS='CFLAGS=' SET_MAKE='MAKE=make' SHELL='/bin/sh' SHLIB_EXT='.dylib' SIZEOF_FC_CHARACTER='1' SIZEOF_FC_DOUBLE_PRECISION='8' SIZEOF_FC_INTEGER='4' SIZEOF_FC_REAL='4' SIZEOF_MPI_STATUS='20' SSH='' STRIP='strip' USER_CFLAGS='-fPIC' USER_CPPFLAGS='' USER_CXXFLAGS='' USER_EXTRA_LIBS='' USER_FCFLAGS='-O0 -fPIC' USER_FFLAGS='-O0 -fPIC' USER_LDFLAGS='-L/usr/X11/lib' USER_LIBS='' USE_DBG_LOGGING='0' VERSION='3.2' VPATH='VPATH=.:${srcdir}' WRAPPER_CFLAGS='-fPIC' WRAPPER_CPPFLAGS='' WRAPPER_CXXFLAGS='' WRAPPER_EXTRA_LIBS='' WRAPPER_FCFLAGS='-O0 -fPIC' WRAPPER_FFLAGS='-O0 -fPIC' WRAPPER_LDFLAGS='-L/usr/X11/lib -Wl,-flat_namespace -Wl,-commons,use_dylibs' WRAPPER_LIBS=' -lpthread ' WRAPPER_RPATH_LDFLAGS='' WTIME_DOUBLE_TYPE='REAL*8' XARGS_NODATA_OPT='' ac_ct_AR='ar' ac_ct_CC='' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindings=' f77 f90 f08 cxx' bindir='${exec_prefix}/bin' build='x86_64-apple-darwin16.7.0' build_alias='' build_cpu='x86_64' build_os='darwin16.7.0' build_vendor='apple' channel_name='nemesis' datadir='${datarootdir}' datarootdir='${prefix}/share' device_name='ch3' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_wrapper_rpath='yes' exec_prefix='${prefix}' host='x86_64-apple-darwin16.7.0' host_alias='' host_cpu='x86_64' host_os='darwin16.7.0' host_vendor='apple' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Applications/Amber17/amber16/AmberTools/src/mpich-3.2/confdb/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' libmpi_so_version='13:0:1' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' master_top_builddir='/Applications/Amber17/amber16/AmberTools/src/mpich-3.2' master_top_srcdir='/Applications/Amber17/amber16/AmberTools/src/mpich-3.2' mkdir_p='$(MKDIR_P)' mmx_copy_s='' modincdir='${prefix}/include' mpich_libtool_static_flag='-static' mpllib='src/mpl/libmpl.la' mpllibdir='' mplsrcdir='/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/mpl' nemesis_nets_array='MPIDI_NEM_TCP' nemesis_nets_array_sz='1' nemesis_nets_dirs='tcp' nemesis_nets_func_array='&MPIDI_nem_tcp_funcs' nemesis_nets_func_decl='MPIDI_nem_tcp_funcs' nemesis_nets_macro_defs='#define MPIDI_NEM_TCP 0' nemesis_nets_strings='"tcp"' nemesis_networks='tcp' oldincludedir='/usr/include' opalib='/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa/src/libopa.la' opalibdir='' opasrcdir='/Applications/Amber17/amber16/AmberTools/src/mpich-3.2/src/openpa' pdfdir='${docdir}' pkgconfigdir='${exec_prefix}/lib/pkgconfig' pm_name='hydra' prefix='/Applications/Amber17/amber16' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' test/mpi' sysconfdir='${prefix}/etc' target_alias='' ## ------------------- ## ## File substitutions. ## ## ------------------- ## cc_shlib_conf='src/env/cc_shlib.conf' cxx_shlib_conf='src/env/cxx_shlib.conf' f77_shlib_conf='src/env/f77_shlib.conf' fc_shlib_conf='src/env/fc_shlib.conf' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "MPICH" #define PACKAGE_TARNAME "mpich" #define PACKAGE_VERSION "3.2" #define PACKAGE_STRING "MPICH 3.2" #define PACKAGE_BUGREPORT "discuss@mpich.org" #define PACKAGE_URL "http://www.mpich.org/" #define PACKAGE "mpich" #define VERSION "3.2" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL #define USE_LOGGING MPID_LOGGING_NONE #define MPICH_THREAD_LEVEL MPI_THREAD_MULTIPLE #define MPICH_IS_THREADED 1 #define MPICH_THREAD_GRANULARITY MPICH_THREAD_GRANULARITY_GLOBAL #define MPIU_HANDLE_ALLOCATION_METHOD MPIU_HANDLE_ALLOCATION_MUTEX #define MPIU_THREAD_REFCOUNT MPIU_REFCOUNT_NONE #define HAVE_ROMIO 1 #define HAVE__FUNC__ /**/ #define HAVE__FUNCTION__ /**/ #define ENABLE_PVAR_NEM 0 #define ENABLE_PVAR_RECVQ 0 #define ENABLE_PVAR_RMA 0 #define HAVE_LONG_LONG 1 #define STDCALL #define F77_NAME_LOWER_USCORE 1 #define HAVE_MPI_F_INIT_WORKS_WITH_C 1 #define HAVE_FORTRAN_BINDING 1 #define HAVE_F08_BINDING 1 #define TRUE 1 #define FALSE 0 #define HAVE_CXX_EXCEPTIONS /**/ #define HAVE_NAMESPACES /**/ #define HAVE_NAMESPACE_STD /**/ #define HAVE_CXX_BINDING 1 #define HAVE_NAMEPUB_SERVICE 1 #define restrict __restrict #define HAVE_GCC_ATTRIBUTE 1 #define HAVE_BUILTIN_EXPECT 1 #define WORDS_LITTLEENDIAN 1 #define HAVE_LONG_DOUBLE 1 #define HAVE_LONG_LONG_INT 1 #define HAVE_MAX_INTEGER_ALIGNMENT 8 #define HAVE_MAX_STRUCT_ALIGNMENT 8 #define HAVE_MAX_FP_ALIGNMENT 16 #define HAVE_MAX_DOUBLE_FP_ALIGNMENT 8 #define HAVE_MAX_LONG_DOUBLE_FP_ALIGNMENT 16 #define SIZEOF_CHAR 1 #define SIZEOF_UNSIGNED_CHAR 1 #define SIZEOF_SHORT 2 #define SIZEOF_UNSIGNED_SHORT 2 #define SIZEOF_INT 4 #define SIZEOF_UNSIGNED_INT 4 #define SIZEOF_LONG 8 #define SIZEOF_UNSIGNED_LONG 8 #define SIZEOF_LONG_LONG 8 #define SIZEOF_UNSIGNED_LONG_LONG 8 #define SIZEOF_FLOAT 4 #define SIZEOF_DOUBLE 8 #define SIZEOF_LONG_DOUBLE 16 #define SIZEOF_VOID_P 8 #define STDC_HEADERS 1 #define HAVE_STDDEF_H 1 #define SIZEOF_WCHAR_T 4 #define SIZEOF_FLOAT_INT 8 #define SIZEOF_DOUBLE_INT 16 #define SIZEOF_LONG_INT 16 #define SIZEOF_SHORT_INT 8 #define SIZEOF_TWO_INT 8 #define SIZEOF_LONG_DOUBLE_INT 32 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_INT8_T 1 #define HAVE_INT16_T 1 #define HAVE_INT32_T 1 #define HAVE_INT64_T 1 #define HAVE_UINT8_T 1 #define HAVE_UINT16_T 1 #define HAVE_UINT32_T 1 #define HAVE_UINT64_T 1 #define HAVE_STDBOOL_H 1 #define HAVE_COMPLEX_H 1 #define SIZEOF__BOOL 1 #define SIZEOF_FLOAT__COMPLEX 8 #define SIZEOF_DOUBLE__COMPLEX 16 #define SIZEOF_LONG_DOUBLE__COMPLEX 32 #define HAVE__BOOL 1 #define HAVE_FLOAT__COMPLEX 1 #define HAVE_DOUBLE__COMPLEX 1 #define HAVE_LONG_DOUBLE__COMPLEX 1 #define MPIR_REAL4_CTYPE float #define MPIR_REAL8_CTYPE double #define MPIR_REAL16_CTYPE long double #define MPIR_INTEGER1_CTYPE char #define MPIR_INTEGER2_CTYPE short #define MPIR_INTEGER4_CTYPE int #define MPIR_INTEGER8_CTYPE long #define SIZEOF_F77_INTEGER 4 #define SIZEOF_F77_REAL 4 #define SIZEOF_F77_DOUBLE_PRECISION 8 #define MPIR_FC_REAL_CTYPE float #define MPIR_FC_DOUBLE_CTYPE double #define HAVE_AINT_LARGER_THAN_FINT 1 #define HAVE_AINT_DIFFERENT_THAN_FINT 1 #define HAVE_FINT_IS_INT 1 #define F77_TRUE_VALUE_SET 1 #define F77_TRUE_VALUE 1 #define F77_FALSE_VALUE 0 #define SIZEOF_BOOL 1 #define MPIR_CXX_BOOL_CTYPE _Bool #define SIZEOF_COMPLEX 8 #define SIZEOF_DOUBLECOMPLEX 16 #define SIZEOF_LONGDOUBLECOMPLEX 32 #define HAVE_CXX_COMPLEX 1 #define MPIR_CXX_BOOL_VALUE 0x4c000133 #define MPIR_CXX_COMPLEX_VALUE 0x4c000834 #define MPIR_CXX_DOUBLE_COMPLEX_VALUE 0x4c001035 #define MPIR_CXX_LONG_DOUBLE_COMPLEX_VALUE 0x4c002036 #define HAVE_ANY_INT64_T_ALIGNMENT 1 #define HAVE_ANY_INT32_T_ALIGNMENT 1 #define STDC_HEADERS 1 #define HAVE_STDLIB_H 1 #define HAVE_STDARG_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_STRING_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS_H 1 #define HAVE_STDDEF_H 1 #define HAVE_ERRNO_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_UNISTD_H 1 #define HAVE_ASSERT_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_UIO_H 1 #define HAVE_SETITIMER 1 #define HAVE_ALARM 1 #define HAVE_VSNPRINTF 1 #define HAVE_VSPRINTF 1 #define HAVE_STRERROR 1 #define HAVE_STRNCASECMP 1 #define HAVE_DECL_STRERROR_R 1 #define HAVE_STRERROR_R 1 #define HAVE_SNPRINTF 1 #define HAVE_QSORT 1 #define HAVE_VA_COPY 1 #define HAVE_MACRO_VA_ARGS 1 #define HAVE_ALLOCA_H 1 #define HAVE_ALLOCA 1 #define HAVE_STRDUP 1 #define HAVE_MKSTEMP 1 #define HAVE_FDOPEN 1 #define NEEDS_FDOPEN_DECL 1 #define HAVE_PUTENV 1 #define HAVE_CLOCK_GETTIME 1 #define HAVE_CLOCK_GETRES 1 #define HAVE_MACH_ABSOLUTE_TIME 1 #define HAVE_GETTIMEOFDAY 1 #define MPIR_AINT_MAX LONG_MAX #define MPIU_Pint long #define MPIU_PINT_FMT_DEC_SPEC "%ld" #define MPIU_Upint unsigned long #define MPIU_UPINT_FMT_DEC_SPEC "%lu" #define MPIU_SIZE_T unsigned long #define SIZEOF_MPIR_BSEND_DATA_T 96 #define HAVE_PTHREAD_H 1 #define MPICH_PTHREAD_MUTEX_ERRORCHECK_VALUE PTHREAD_MUTEX_ERRORCHECK #define MPICH_THREAD_PACKAGE_NAME MPICH_THREAD_PACKAGE_POSIX #define HAVE_GETPID 1 #define HAVE_SCHED_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SCHED_YIELD 1 #define HAVE_USLEEP 1 #define HAVE_SLEEP 1 #define HAVE_SELECT 1 #define USE_SCHED_YIELD_FOR_YIELD 1 #define HAVE_THREAD_POLICY_SET 1 #define HAVE_UNISTD_H 1 #define HAVE_STRING_H 1 #define HAVE_STDLIB_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_STRINGS_H 1 #define HAVE_ASSERT_H 1 #define HAVE_ARPA_INET_H 1 #define HAVE_SNPRINTF 1 #define HAVE_STRNCASECMP 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_NETINET_TCP_H 1 #define HAVE_SYS_UN_H 1 #define HAVE_NETDB_H 1 #define HAVE_SOCKET 1 #define HAVE_SETSOCKOPT 1 #define HAVE_GETHOSTBYNAME 1 #define USE_PMI_PORT 1 #define HAVE_H_ADDR_LIST 1 #define HAVE_GCC_ATTRIBUTE 1 #define CH3_RANK_BITS 16 #define HAVE_ASSERT_H 1 #define HAVE_LIMITS_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_UIO_H 1 #define HAVE_UUID_UUID_H 1 #define HAVE_TIME_H 1 #define HAVE_CTYPE_H 1 #define HAVE_UNISTD_H 1 #define HAVE_ARPA_INET_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_NET_IF_H 1 #define HAVE_INET_PTON 1 #define HAVE_GETHOSTNAME 1 #define HAVE_UUID_GENERATE 1 #define HAVE_TIME 1 #define HAVE_NET_IF_H 1 #define HAVE_ASSERT_H 1 #define HAVE_NETDB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SCHED_H 1 #define HAVE_SYS_MMAN_H 1 #define HAVE_SYS_IOCTL_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_SOCKIO_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_ERRNO_H 1 #define HAVE_SYS_IPC_H 1 #define HAVE_SYS_SHM_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_SIGNAL_H 1 #define HAVE_SIGNAL 1 #define HAVE_MKSTEMP 1 #define HAVE_RAND 1 #define HAVE_SRAND 1 #define HAVE_MMAP 1 #define HAVE_MUNMAP 1 #define USE_MMAP_SHM 1 #define MPID_NEM_INLINE 1 #define PREFETCH_CELL 1 #define USE_FASTBOX 1 #define HAVE_H_ADDR_LIST 1 #define HAVE_STRUCT_IFCONF 1 #define HAVE_STRUCT_IFREQ 1 #define MPID_NEM_LOCAL_LMT_IMPL MPID_NEM_LOCAL_LMT_SHM_COPY #define MPID_NEM_USE_LOCK_FREE_QUEUES 1 #define SIZEOF_OPA_PTR_T 8 #define MPIR_OFFSET_MAX LLONG_MAX #define MPIR_COUNT_MAX LLONG_MAX #define MPIR_Ucount unsigned long long #define MPIF_STATUS_SIZE 5 #define HAVE_STDIO_H 1 #define HAVE_FC_TYPE_ROUTINES 1 #define HAVE_MPICHCONF 1 configure: exit 0