Can you give me the link for molsurf that I can follow the procedure?
On Wed, Aug 16, 2017 at 11:39 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Cpptraj doesn't measure SASA energy, just surface area. 'surf' uses LCPO
> algorithm, 'molsurf' is the Connolly surface.
>
> -Dan
>
> On Wed, Aug 16, 2017 at 2:09 PM Mohammad Zahidul Hossain Khan <
> za.parash.gmail.com> wrote:
>
> > i can convert the file but I need the procedure of cpptraj for measuring
> > the SASA energy
> >
> > On Fri, Aug 11, 2017 at 12:17 PM, Mohammad Zahidul Hossain Khan <
> > za.parash.gmail.com> wrote:
> >
> > > Dear Sir
> > >
> > > I know but I need the link or tutorial for SASA energy. I am gromaces
> > user
> > > so I need to convert my files also
> > >
> > >
> > > On Fri, Aug 11, 2017 at 12:06 PM, Elvis Martis <
> elvis.martis.bcp.edu.in>
> > > wrote:
> > >
> > >> HI,
> > >> you can use cpptraj, using the command "surf"
> > >>
> > >> Best Regards
> > >> Elvis Martis
> > >> Mumbai, INDIA.
> > >>
> > >> ________________________________________
> > >> From: Mohammad Zahidul Hossain Khan <za.parash.gmail.com>
> > >> Sent: 11 August 2017 22:47
> > >> To: amber.ambermd.org
> > >> Subject: [AMBER] SASA energy
> > >>
> > >> Does anyone know how to measure solvent accessible surface area energy
> > >> using amber.
> > >>
> > >> --
> > >>
> > >>
> > >> *Mohammad Zahidul Hossain Khan Graduate student**Department of
> Physics*
> > >> *Email: khan5121.vandals.uidaho.edu <khan5121.vandals.uidaho.edu>*
> > >> * Skype: parash.khan2*
> > >> *Cell: +12085967165*
> > >> _______________________________________________
> > >> AMBER mailing list
> > >> AMBER.ambermd.org
> > >> http://lists.ambermd.org/mailman/listinfo/amber
> > >>
> > >> _______________________________________________
> > >> AMBER mailing list
> > >> AMBER.ambermd.org
> > >> http://lists.ambermd.org/mailman/listinfo/amber
> > >>
> > >
> > >
> > >
> > > --
> > >
> > >
> > > *Mohammad Zahidul Hossain Khan Graduate student**Department of Physics*
> > > *Email: khan5121.vandals.uidaho.edu <khan5121.vandals.uidaho.edu>*
> > > * Skype: parash.khan2*
> > > *Cell: +12085967165 <(208)%20596-7165>*
> > >
> >
> >
> >
> > --
> >
> >
> > *Mohammad Zahidul Hossain Khan Graduate student**Department of Physics*
> > *Email: khan5121.vandals.uidaho.edu <khan5121.vandals.uidaho.edu>*
> > * Skype: parash.khan2*
> > *Cell: +12085967165*
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> --
> -------------------------
> Daniel R. Roe
> Laboratory of Computational Biology
> National Institutes of Health, NHLBI
> 5635 Fishers Ln, Rm T900
> Rockville MD, 20852
> https://www.lobos.nih.gov/lcb
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
*Mohammad Zahidul Hossain Khan Graduate student**Department of Physics*
*Email: khan5121.vandals.uidaho.edu <khan5121.vandals.uidaho.edu>*
* Skype: parash.khan2*
*Cell: +12085967165*
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Aug 16 2017 - 12:00:03 PDT
